Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0384 and Echvi_0385 are separated by 41 nucleotides Echvi_0385 and Echvi_0386 are separated by 393 nucleotides Echvi_0386 and Echvi_0387 are separated by 16 nucleotides
Echvi_0384: Echvi_0384 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 410,266 to 412,722
_0384
Echvi_0385: Echvi_0385 - Predicted transcription factor, homolog of eukaryotic MBF1, at 412,764 to 413,048
_0385
Echvi_0386: Echvi_0386 - hypothetical protein, at 413,442 to 413,768
_0386
Echvi_0387: Echvi_0387 - Helix-turn-helix., at 413,785 to 414,171
_0387
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 411.793 kb on + strand, within Echvi_0384 at 411.793 kb on + strand, within Echvi_0384 at 411.793 kb on + strand, within Echvi_0384 at 411.793 kb on + strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.799 kb on + strand, within Echvi_0384 at 411.799 kb on + strand, within Echvi_0384 at 411.799 kb on + strand, within Echvi_0384 at 411.833 kb on + strand, within Echvi_0384 at 411.833 kb on + strand, within Echvi_0384 at 411.833 kb on + strand, within Echvi_0384 at 411.833 kb on + strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.844 kb on + strand, within Echvi_0384 at 411.844 kb on + strand, within Echvi_0384 at 411.845 kb on - strand, within Echvi_0384 at 411.845 kb on - strand, within Echvi_0384 at 411.845 kb on - strand, within Echvi_0384 at 411.894 kb on - strand, within Echvi_0384 at 411.901 kb on - strand, within Echvi_0384 at 411.910 kb on - strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.914 kb on - strand, within Echvi_0384 at 411.914 kb on - strand, within Echvi_0384 at 411.924 kb on + strand, within Echvi_0384 at 411.924 kb on + strand, within Echvi_0384 at 411.924 kb on + strand, within Echvi_0384 at 411.925 kb on - strand, within Echvi_0384 at 411.925 kb on - strand, within Echvi_0384 at 411.925 kb on - strand, within Echvi_0384 at 411.925 kb on - strand, within Echvi_0384 at 411.931 kb on - strand, within Echvi_0384 at 411.935 kb on - strand, within Echvi_0384 at 411.935 kb on - strand, within Echvi_0384 at 411.935 kb on - strand, within Echvi_0384 at 411.935 kb on - strand, within Echvi_0384 at 412.033 kb on + strand, within Echvi_0384 at 412.034 kb on - strand, within Echvi_0384 at 412.034 kb on - strand, within Echvi_0384 at 412.036 kb on + strand, within Echvi_0384 at 412.037 kb on - strand, within Echvi_0384 at 412.037 kb on - strand, within Echvi_0384 at 412.211 kb on + strand, within Echvi_0384 at 412.212 kb on - strand, within Echvi_0384 at 412.214 kb on + strand, within Echvi_0384 at 412.214 kb on + strand, within Echvi_0384 at 412.215 kb on - strand, within Echvi_0384 at 412.215 kb on - strand, within Echvi_0384 at 412.227 kb on + strand, within Echvi_0384 at 412.227 kb on + strand, within Echvi_0384 at 412.245 kb on - strand, within Echvi_0384 at 412.248 kb on - strand, within Echvi_0384 at 412.255 kb on + strand, within Echvi_0384 at 412.261 kb on + strand, within Echvi_0384 at 412.262 kb on - strand, within Echvi_0384 at 412.262 kb on - strand, within Echvi_0384 at 412.282 kb on - strand, within Echvi_0384 at 412.312 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.432 kb on - strand, within Echvi_0384 at 412.488 kb on + strand at 412.489 kb on - strand at 412.532 kb on + strand at 412.532 kb on + strand at 412.532 kb on + strand at 412.533 kb on - strand at 412.535 kb on + strand at 412.536 kb on - strand at 412.538 kb on - strand at 412.538 kb on - strand at 412.538 kb on - strand at 412.538 kb on - strand at 412.538 kb on - strand at 412.542 kb on + strand at 412.542 kb on + strand at 412.543 kb on - strand at 412.543 kb on - strand at 412.543 kb on - strand at 412.543 kb on - strand at 412.543 kb on - strand at 412.544 kb on + strand at 412.544 kb on + strand at 412.544 kb on + strand at 412.545 kb on - strand at 412.587 kb on + strand at 412.592 kb on + strand at 412.599 kb on + strand at 412.600 kb on - strand at 412.608 kb on + strand at 412.608 kb on + strand at 412.609 kb on - strand at 412.615 kb on + strand at 412.615 kb on + strand at 412.628 kb on - strand at 412.689 kb on + strand at 412.690 kb on - strand at 412.690 kb on - strand at 412.766 kb on - strand at 412.826 kb on + strand, within Echvi_0385 at 412.834 kb on - strand, within Echvi_0385 at 412.834 kb on - strand, within Echvi_0385 at 412.836 kb on - strand, within Echvi_0385 at 412.878 kb on + strand, within Echvi_0385 at 412.878 kb on + strand, within Echvi_0385 at 412.879 kb on - strand, within Echvi_0385 at 412.879 kb on - strand, within Echvi_0385 at 412.976 kb on - strand, within Echvi_0385 at 412.983 kb on + strand, within Echvi_0385 at 412.991 kb on + strand, within Echvi_0385 at 412.992 kb on - strand, within Echvi_0385 at 413.007 kb on - strand, within Echvi_0385 at 413.007 kb on - strand, within Echvi_0385 at 413.016 kb on + strand, within Echvi_0385 at 413.041 kb on + strand at 413.042 kb on - strand at 413.048 kb on + strand at 413.049 kb on - strand at 413.049 kb on - strand at 413.049 kb on - strand at 413.061 kb on + strand at 413.062 kb on - strand at 413.086 kb on + strand at 413.185 kb on - strand at 413.191 kb on + strand at 413.239 kb on + strand at 413.293 kb on + strand at 413.310 kb on + strand at 413.347 kb on - strand at 413.349 kb on + strand at 413.350 kb on - strand at 413.421 kb on - strand at 413.428 kb on + strand at 413.438 kb on - strand at 413.439 kb on + strand at 413.443 kb on + strand at 413.443 kb on + strand at 413.497 kb on + strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.568 kb on - strand, within Echvi_0386 at 413.568 kb on - strand, within Echvi_0386 at 413.569 kb on + strand, within Echvi_0386 at 413.569 kb on + strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.576 kb on + strand, within Echvi_0386 at 413.577 kb on - strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.582 kb on + strand, within Echvi_0386 at 413.583 kb on - strand, within Echvi_0386 at 413.613 kb on + strand, within Echvi_0386 at 413.645 kb on + strand, within Echvi_0386 at 413.645 kb on + strand, within Echvi_0386 at 413.708 kb on + strand, within Echvi_0386 at 413.709 kb on - strand, within Echvi_0386 at 413.709 kb on - strand, within Echvi_0386 at 413.768 kb on + strand at 413.768 kb on + strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.780 kb on + strand at 413.781 kb on - strand at 413.781 kb on - strand at 413.793 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.821 kb on - strand at 413.857 kb on + strand, within Echvi_0387 at 413.949 kb on + strand, within Echvi_0387 at 413.972 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.035 kb on + strand, within Echvi_0387
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 411,793 + Echvi_0384 0.62 -0.0 411,793 + Echvi_0384 0.62 -0.2 411,793 + Echvi_0384 0.62 +0.8 411,793 + Echvi_0384 0.62 -0.3 411,794 - Echvi_0384 0.62 -2.8 411,794 - Echvi_0384 0.62 -1.7 411,794 - Echvi_0384 0.62 -0.2 411,794 - Echvi_0384 0.62 -3.1 411,794 - Echvi_0384 0.62 -1.2 411,799 + Echvi_0384 0.62 -0.9 411,799 + Echvi_0384 0.62 -2.2 411,799 + Echvi_0384 0.62 -0.6 411,833 + Echvi_0384 0.64 -1.9 411,833 + Echvi_0384 0.64 -1.4 411,833 + Echvi_0384 0.64 +0.9 411,833 + Echvi_0384 0.64 -2.2 411,834 - Echvi_0384 0.64 +0.8 411,834 - Echvi_0384 0.64 +1.1 411,834 - Echvi_0384 0.64 -0.2 411,834 - Echvi_0384 0.64 +0.5 411,834 - Echvi_0384 0.64 -0.5 411,834 - Echvi_0384 0.64 -1.9 411,844 + Echvi_0384 0.64 +1.5 411,844 + Echvi_0384 0.64 +1.9 411,845 - Echvi_0384 0.64 -0.3 411,845 - Echvi_0384 0.64 +1.8 411,845 - Echvi_0384 0.64 -0.2 411,894 - Echvi_0384 0.66 -1.3 411,901 - Echvi_0384 0.67 +0.6 411,910 - Echvi_0384 0.67 -3.0 411,913 + Echvi_0384 0.67 +1.2 411,913 + Echvi_0384 0.67 -0.1 411,913 + Echvi_0384 0.67 +0.5 411,913 + Echvi_0384 0.67 +0.9 411,913 + Echvi_0384 0.67 -1.5 411,914 - Echvi_0384 0.67 +0.3 411,914 - Echvi_0384 0.67 -1.4 411,924 + Echvi_0384 0.67 +0.1 411,924 + Echvi_0384 0.67 -1.8 411,924 + Echvi_0384 0.67 -3.0 411,925 - Echvi_0384 0.68 -0.1 411,925 - Echvi_0384 0.68 +1.1 411,925 - Echvi_0384 0.68 -2.6 411,925 - Echvi_0384 0.68 +0.9 411,931 - Echvi_0384 0.68 -0.3 411,935 - Echvi_0384 0.68 -0.7 411,935 - Echvi_0384 0.68 -0.7 411,935 - Echvi_0384 0.68 +0.2 411,935 - Echvi_0384 0.68 -0.9 412,033 + Echvi_0384 0.72 +0.7 412,034 - Echvi_0384 0.72 -0.7 412,034 - Echvi_0384 0.72 -0.2 412,036 + Echvi_0384 0.72 +1.2 412,037 - Echvi_0384 0.72 -0.3 412,037 - Echvi_0384 0.72 -0.8 412,211 + Echvi_0384 0.79 -0.3 412,212 - Echvi_0384 0.79 -0.2 412,214 + Echvi_0384 0.79 +0.1 412,214 + Echvi_0384 0.79 +0.1 412,215 - Echvi_0384 0.79 -1.3 412,215 - Echvi_0384 0.79 -0.2 412,227 + Echvi_0384 0.80 +0.1 412,227 + Echvi_0384 0.80 -0.4 412,245 - Echvi_0384 0.81 +0.5 412,248 - Echvi_0384 0.81 +0.3 412,255 + Echvi_0384 0.81 -0.0 412,261 + Echvi_0384 0.81 -0.5 412,262 - Echvi_0384 0.81 +0.1 412,262 - Echvi_0384 0.81 -0.0 412,282 - Echvi_0384 0.82 +0.1 412,312 + Echvi_0384 0.83 -0.3 412,429 + Echvi_0384 0.88 -1.2 412,429 + Echvi_0384 0.88 +0.7 412,429 + Echvi_0384 0.88 -1.5 412,429 + Echvi_0384 0.88 +0.3 412,429 + Echvi_0384 0.88 +1.4 412,429 + Echvi_0384 0.88 -0.3 412,429 + Echvi_0384 0.88 -0.1 412,429 + Echvi_0384 0.88 -0.7 412,429 + Echvi_0384 0.88 -1.8 412,429 + Echvi_0384 0.88 +0.1 412,429 + Echvi_0384 0.88 -0.1 412,429 + Echvi_0384 0.88 -1.9 412,430 - Echvi_0384 0.88 +0.3 412,430 - Echvi_0384 0.88 -0.2 412,430 - Echvi_0384 0.88 -1.4 412,430 - Echvi_0384 0.88 -2.1 412,430 - Echvi_0384 0.88 -1.0 412,430 - Echvi_0384 0.88 -0.1 412,430 - Echvi_0384 0.88 +0.1 412,430 - Echvi_0384 0.88 +0.1 412,430 - Echvi_0384 0.88 -0.6 412,430 - Echvi_0384 0.88 +0.1 412,430 - Echvi_0384 0.88 +0.7 412,430 - Echvi_0384 0.88 -2.3 412,430 - Echvi_0384 0.88 -0.4 412,432 - Echvi_0384 0.88 -1.1 412,488 + -0.5 412,489 - -0.3 412,532 + -0.3 412,532 + +0.8 412,532 + +0.2 412,533 - +1.2 412,535 + -0.1 412,536 - -2.2 412,538 - +1.5 412,538 - -0.6 412,538 - +0.2 412,538 - +1.0 412,538 - +2.1 412,542 + +1.3 412,542 + -1.4 412,543 - -1.3 412,543 - -1.4 412,543 - +1.9 412,543 - -0.4 412,543 - -1.1 412,544 + +0.7 412,544 + +0.1 412,544 + +1.5 412,545 - +0.0 412,587 + +0.5 412,592 + -0.2 412,599 + +1.0 412,600 - +1.1 412,608 + -0.4 412,608 + -1.3 412,609 - +0.8 412,615 + +0.3 412,615 + +1.8 412,628 - +1.3 412,689 + -0.7 412,690 - -1.5 412,690 - +0.3 412,766 - -0.7 412,826 + Echvi_0385 0.22 -0.3 412,834 - Echvi_0385 0.25 +1.9 412,834 - Echvi_0385 0.25 +0.6 412,836 - Echvi_0385 0.25 -1.2 412,878 + Echvi_0385 0.40 +1.2 412,878 + Echvi_0385 0.40 +0.8 412,879 - Echvi_0385 0.40 +1.4 412,879 - Echvi_0385 0.40 -1.1 412,976 - Echvi_0385 0.74 +1.7 412,983 + Echvi_0385 0.77 +0.7 412,991 + Echvi_0385 0.80 +0.0 412,992 - Echvi_0385 0.80 -0.2 413,007 - Echvi_0385 0.85 +0.5 413,007 - Echvi_0385 0.85 +0.2 413,016 + Echvi_0385 0.88 +1.2 413,041 + +0.1 413,042 - +0.3 413,048 + +0.8 413,049 - +0.1 413,049 - +1.1 413,049 - -0.8 413,061 + +1.8 413,062 - +0.6 413,086 + -1.3 413,185 - +2.1 413,191 + +0.9 413,239 + +0.1 413,293 + -0.5 413,310 + -0.1 413,347 - -0.2 413,349 + -0.3 413,350 - +0.3 413,421 - -0.1 413,428 + +0.5 413,438 - +1.7 413,439 + +0.5 413,443 + +2.2 413,443 + +1.6 413,497 + Echvi_0386 0.17 -0.0 413,544 - Echvi_0386 0.31 +1.6 413,544 - Echvi_0386 0.31 -0.8 413,544 - Echvi_0386 0.31 -1.1 413,561 + Echvi_0386 0.36 +0.3 413,561 + Echvi_0386 0.36 +0.9 413,561 + Echvi_0386 0.36 +0.3 413,568 - Echvi_0386 0.39 -0.4 413,568 - Echvi_0386 0.39 -0.7 413,569 + Echvi_0386 0.39 +0.9 413,569 + Echvi_0386 0.39 -2.2 413,570 - Echvi_0386 0.39 +2.0 413,570 - Echvi_0386 0.39 -1.4 413,570 - Echvi_0386 0.39 +1.2 413,576 + Echvi_0386 0.41 -0.2 413,577 - Echvi_0386 0.41 -0.9 413,578 + Echvi_0386 0.42 -2.5 413,578 + Echvi_0386 0.42 -1.5 413,578 + Echvi_0386 0.42 -1.7 413,578 + Echvi_0386 0.42 -0.1 413,578 + Echvi_0386 0.42 -0.3 413,578 + Echvi_0386 0.42 -0.4 413,578 + Echvi_0386 0.42 +0.3 413,578 + Echvi_0386 0.42 -1.3 413,578 + Echvi_0386 0.42 +1.6 413,578 + Echvi_0386 0.42 -0.1 413,579 - Echvi_0386 0.42 -0.1 413,579 - Echvi_0386 0.42 +0.2 413,579 - Echvi_0386 0.42 -0.3 413,582 + Echvi_0386 0.43 +0.1 413,583 - Echvi_0386 0.43 -0.2 413,613 + Echvi_0386 0.52 -0.6 413,645 + Echvi_0386 0.62 +0.1 413,645 + Echvi_0386 0.62 +0.2 413,708 + Echvi_0386 0.81 -0.3 413,709 - Echvi_0386 0.82 +0.3 413,709 - Echvi_0386 0.82 -1.3 413,768 + +0.9 413,768 + -0.1 413,769 - +0.5 413,769 - -0.1 413,769 - +2.2 413,780 + +0.9 413,781 - +0.1 413,781 - -0.3 413,793 + -1.7 413,820 + -0.1 413,820 + -0.0 413,820 + -1.0 413,820 + -1.4 413,820 + -0.3 413,821 - -2.9 413,857 + Echvi_0387 0.19 -0.7 413,949 + Echvi_0387 0.42 -0.5 413,972 + Echvi_0387 0.48 +1.1 414,026 + Echvi_0387 0.62 -2.6 414,026 + Echvi_0387 0.62 -1.8 414,027 - Echvi_0387 0.63 +1.2 414,027 - Echvi_0387 0.63 -2.4 414,027 - Echvi_0387 0.63 +0.4 414,027 - Echvi_0387 0.63 +2.1 414,035 + Echvi_0387 0.65 -3.3
Or see this region's nucleotide sequence