Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15800 and CA264_15805 are separated by 139 nucleotides CA264_15805 and CA264_15810 are separated by 38 nucleotides CA264_15810 and CA264_15815 are separated by 7 nucleotides CA264_15815 and CA264_15820 are separated by 203 nucleotides
CA264_15800: CA264_15800 - hypothetical protein, at 3,687,017 to 3,687,549
_15800
CA264_15805: CA264_15805 - hypothetical protein, at 3,687,689 to 3,687,928
_15805
CA264_15810: CA264_15810 - hypothetical protein, at 3,687,967 to 3,688,353
_15810
CA264_15815: CA264_15815 - hypothetical protein, at 3,688,361 to 3,688,936
_15815
CA264_15820: CA264_15820 - transcription-repair coupling factor, at 3,689,140 to 3,692,511
_15820
Position (kb)
3687
3688
3689 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3687.014 kb on + strand at 3687.014 kb on + strand at 3687.014 kb on + strand at 3687.014 kb on + strand at 3687.014 kb on + strand at 3687.014 kb on + strand at 3687.014 kb on + strand at 3687.015 kb on - strand at 3687.015 kb on - strand at 3687.015 kb on - strand at 3687.019 kb on - strand at 3687.066 kb on + strand at 3687.144 kb on - strand, within CA264_15800 at 3687.184 kb on - strand, within CA264_15800 at 3687.184 kb on - strand, within CA264_15800 at 3687.225 kb on - strand, within CA264_15800 at 3687.230 kb on - strand, within CA264_15800 at 3687.284 kb on - strand, within CA264_15800 at 3687.285 kb on + strand, within CA264_15800 at 3687.314 kb on + strand, within CA264_15800 at 3687.325 kb on - strand, within CA264_15800 at 3687.346 kb on + strand, within CA264_15800 at 3687.351 kb on + strand, within CA264_15800 at 3687.356 kb on + strand, within CA264_15800 at 3687.356 kb on + strand, within CA264_15800 at 3687.357 kb on - strand, within CA264_15800 at 3687.362 kb on + strand, within CA264_15800 at 3687.400 kb on - strand, within CA264_15800 at 3687.459 kb on + strand, within CA264_15800 at 3687.554 kb on + strand at 3687.557 kb on + strand at 3687.560 kb on - strand at 3687.560 kb on - strand at 3687.567 kb on + strand at 3687.568 kb on - strand at 3687.589 kb on - strand at 3687.604 kb on - strand at 3687.770 kb on + strand, within CA264_15805 at 3687.771 kb on - strand, within CA264_15805 at 3687.833 kb on + strand, within CA264_15805 at 3687.833 kb on + strand, within CA264_15805 at 3687.834 kb on - strand, within CA264_15805 at 3687.900 kb on + strand, within CA264_15805 at 3687.901 kb on - strand, within CA264_15805 at 3687.901 kb on - strand, within CA264_15805 at 3687.942 kb on - strand at 3688.008 kb on + strand, within CA264_15810 at 3688.024 kb on + strand, within CA264_15810 at 3688.062 kb on + strand, within CA264_15810 at 3688.064 kb on + strand, within CA264_15810 at 3688.090 kb on + strand, within CA264_15810 at 3688.090 kb on + strand, within CA264_15810 at 3688.171 kb on + strand, within CA264_15810 at 3688.171 kb on + strand, within CA264_15810 at 3688.180 kb on + strand, within CA264_15810 at 3688.203 kb on + strand, within CA264_15810 at 3688.276 kb on - strand, within CA264_15810 at 3688.299 kb on + strand, within CA264_15810 at 3688.359 kb on - strand at 3688.402 kb on + strand at 3688.402 kb on + strand at 3688.409 kb on + strand at 3688.441 kb on + strand, within CA264_15815 at 3688.442 kb on - strand, within CA264_15815 at 3688.446 kb on - strand, within CA264_15815 at 3688.457 kb on - strand, within CA264_15815 at 3688.457 kb on - strand, within CA264_15815 at 3688.466 kb on - strand, within CA264_15815 at 3688.481 kb on - strand, within CA264_15815 at 3688.499 kb on + strand, within CA264_15815 at 3688.499 kb on + strand, within CA264_15815 at 3688.510 kb on + strand, within CA264_15815 at 3688.561 kb on - strand, within CA264_15815 at 3688.655 kb on + strand, within CA264_15815 at 3688.656 kb on - strand, within CA264_15815 at 3688.674 kb on - strand, within CA264_15815 at 3688.690 kb on + strand, within CA264_15815 at 3688.690 kb on + strand, within CA264_15815 at 3688.690 kb on + strand, within CA264_15815 at 3688.690 kb on + strand, within CA264_15815 at 3688.691 kb on - strand, within CA264_15815 at 3688.773 kb on + strand, within CA264_15815 at 3688.774 kb on - strand, within CA264_15815 at 3688.774 kb on - strand, within CA264_15815 at 3688.774 kb on - strand, within CA264_15815 at 3688.803 kb on + strand, within CA264_15815 at 3688.803 kb on + strand, within CA264_15815 at 3688.803 kb on + strand, within CA264_15815 at 3688.804 kb on - strand, within CA264_15815 at 3688.829 kb on + strand, within CA264_15815 at 3688.835 kb on + strand, within CA264_15815 at 3688.836 kb on - strand, within CA264_15815 at 3688.883 kb on - strand at 3688.900 kb on - strand at 3688.914 kb on - strand at 3688.916 kb on - strand at 3688.945 kb on - strand at 3688.950 kb on - strand at 3688.984 kb on + strand at 3688.984 kb on + strand at 3688.989 kb on + strand at 3688.989 kb on + strand at 3689.040 kb on - strand at 3689.053 kb on + strand at 3689.053 kb on + strand at 3689.053 kb on + strand at 3689.054 kb on - strand at 3689.054 kb on - strand at 3689.059 kb on + strand at 3689.097 kb on - strand at 3689.128 kb on + strand at 3689.147 kb on + strand at 3689.160 kb on - strand at 3689.342 kb on - strand at 3689.342 kb on - strand at 3689.348 kb on - strand at 3689.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 3,687,014 + +0.0 3,687,014 + +1.0 3,687,014 + +0.2 3,687,014 + -0.1 3,687,014 + -0.5 3,687,014 + +0.2 3,687,014 + -0.2 3,687,015 - +0.4 3,687,015 - +0.2 3,687,015 - -2.7 3,687,019 - +0.3 3,687,066 + -0.0 3,687,144 - CA264_15800 0.24 -1.2 3,687,184 - CA264_15800 0.31 -0.2 3,687,184 - CA264_15800 0.31 -0.2 3,687,225 - CA264_15800 0.39 -0.3 3,687,230 - CA264_15800 0.40 -0.7 3,687,284 - CA264_15800 0.50 -0.0 3,687,285 + CA264_15800 0.50 +0.3 3,687,314 + CA264_15800 0.56 -0.6 3,687,325 - CA264_15800 0.58 -0.3 3,687,346 + CA264_15800 0.62 +0.4 3,687,351 + CA264_15800 0.63 -0.7 3,687,356 + CA264_15800 0.64 -0.0 3,687,356 + CA264_15800 0.64 -0.2 3,687,357 - CA264_15800 0.64 -0.2 3,687,362 + CA264_15800 0.65 -0.0 3,687,400 - CA264_15800 0.72 -0.7 3,687,459 + CA264_15800 0.83 -1.1 3,687,554 + +0.2 3,687,557 + -0.5 3,687,560 - +0.5 3,687,560 - +1.0 3,687,567 + -0.7 3,687,568 - -2.6 3,687,589 - +2.9 3,687,604 - +0.5 3,687,770 + CA264_15805 0.34 -0.5 3,687,771 - CA264_15805 0.34 -1.4 3,687,833 + CA264_15805 0.60 -1.2 3,687,833 + CA264_15805 0.60 -0.7 3,687,834 - CA264_15805 0.60 -0.3 3,687,900 + CA264_15805 0.88 -0.5 3,687,901 - CA264_15805 0.88 +0.1 3,687,901 - CA264_15805 0.88 -0.7 3,687,942 - -0.2 3,688,008 + CA264_15810 0.11 -0.8 3,688,024 + CA264_15810 0.15 -1.1 3,688,062 + CA264_15810 0.25 -2.0 3,688,064 + CA264_15810 0.25 -0.3 3,688,090 + CA264_15810 0.32 -0.6 3,688,090 + CA264_15810 0.32 -0.3 3,688,171 + CA264_15810 0.53 -1.4 3,688,171 + CA264_15810 0.53 +1.9 3,688,180 + CA264_15810 0.55 +0.0 3,688,203 + CA264_15810 0.61 +0.8 3,688,276 - CA264_15810 0.80 -1.7 3,688,299 + CA264_15810 0.86 -0.8 3,688,359 - -0.9 3,688,402 + -0.2 3,688,402 + -0.4 3,688,409 + -0.0 3,688,441 + CA264_15815 0.14 -0.3 3,688,442 - CA264_15815 0.14 -0.0 3,688,446 - CA264_15815 0.15 +0.2 3,688,457 - CA264_15815 0.17 -1.4 3,688,457 - CA264_15815 0.17 -0.3 3,688,466 - CA264_15815 0.18 -0.5 3,688,481 - CA264_15815 0.21 +0.2 3,688,499 + CA264_15815 0.24 -0.7 3,688,499 + CA264_15815 0.24 +0.6 3,688,510 + CA264_15815 0.26 -0.5 3,688,561 - CA264_15815 0.35 -0.3 3,688,655 + CA264_15815 0.51 -0.3 3,688,656 - CA264_15815 0.51 +0.1 3,688,674 - CA264_15815 0.54 -1.8 3,688,690 + CA264_15815 0.57 -0.7 3,688,690 + CA264_15815 0.57 -2.0 3,688,690 + CA264_15815 0.57 -0.8 3,688,690 + CA264_15815 0.57 -0.4 3,688,691 - CA264_15815 0.57 -0.1 3,688,773 + CA264_15815 0.72 -0.5 3,688,774 - CA264_15815 0.72 -0.7 3,688,774 - CA264_15815 0.72 -0.4 3,688,774 - CA264_15815 0.72 +0.3 3,688,803 + CA264_15815 0.77 -0.3 3,688,803 + CA264_15815 0.77 +0.2 3,688,803 + CA264_15815 0.77 -1.1 3,688,804 - CA264_15815 0.77 +0.5 3,688,829 + CA264_15815 0.81 +0.1 3,688,835 + CA264_15815 0.82 +0.0 3,688,836 - CA264_15815 0.82 +1.5 3,688,883 - -0.1 3,688,900 - -0.3 3,688,914 - -0.5 3,688,916 - -0.7 3,688,945 - -0.6 3,688,950 - -0.5 3,688,984 + -0.9 3,688,984 + +0.1 3,688,989 + +0.0 3,688,989 + -1.2 3,689,040 - -0.4 3,689,053 + -1.2 3,689,053 + -0.2 3,689,053 + +1.3 3,689,054 - -0.3 3,689,054 - -0.3 3,689,059 + +0.6 3,689,097 - -0.3 3,689,128 + -1.9 3,689,147 + +0.3 3,689,160 - +1.1 3,689,342 - +1.3 3,689,342 - +0.3 3,689,348 - -1.2 3,689,348 - +0.5
Or see this region's nucleotide sequence