Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15170

Experiment: m.b. Ceftazidime 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_15165 and CA264_15170 are separated by 23 nucleotidesCA264_15170 and CA264_15175 are separated by 19 nucleotidesCA264_15175 and CA264_15180 are separated by 3 nucleotides CA264_15165: CA264_15165 - flagellar motor protein MotA, at 3,555,290 to 3,556,156 _15165 CA264_15170: CA264_15170 - biopolymer transporter ExbD, at 3,556,180 to 3,556,785 _15170 CA264_15175: CA264_15175 - biopolymer transporter ExbD, at 3,556,805 to 3,557,329 _15175 CA264_15180: CA264_15180 - energy transducer TonB, at 3,557,333 to 3,558,163 _15180 Position (kb) 3556 3557Strain fitness (log2 ratio) -2 -1 0 1 2at 3555.230 kb on - strandat 3555.325 kb on + strandat 3555.331 kb on - strandat 3555.352 kb on - strandat 3555.407 kb on - strand, within CA264_15165at 3555.482 kb on + strand, within CA264_15165at 3555.622 kb on + strand, within CA264_15165at 3555.623 kb on - strand, within CA264_15165at 3555.623 kb on - strand, within CA264_15165at 3555.857 kb on - strand, within CA264_15165at 3555.865 kb on + strand, within CA264_15165at 3555.904 kb on + strand, within CA264_15165at 3555.904 kb on + strand, within CA264_15165at 3555.910 kb on + strand, within CA264_15165at 3556.241 kb on + strand, within CA264_15170at 3556.266 kb on + strand, within CA264_15170at 3556.305 kb on - strand, within CA264_15170at 3556.311 kb on + strand, within CA264_15170at 3556.312 kb on - strand, within CA264_15170at 3556.380 kb on + strand, within CA264_15170at 3556.427 kb on + strand, within CA264_15170at 3556.597 kb on - strand, within CA264_15170at 3556.626 kb on - strand, within CA264_15170at 3556.783 kb on + strandat 3556.784 kb on - strandat 3556.804 kb on - strandat 3557.069 kb on + strand, within CA264_15175at 3557.235 kb on + strand, within CA264_15175at 3557.344 kb on + strandat 3557.408 kb on + strandat 3557.660 kb on - strand, within CA264_15180

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
remove
3,555,230 - -0.2
3,555,325 + -1.2
3,555,331 - -0.9
3,555,352 - -0.5
3,555,407 - CA264_15165 0.13 -0.5
3,555,482 + CA264_15165 0.22 +0.6
3,555,622 + CA264_15165 0.38 +0.1
3,555,623 - CA264_15165 0.38 -1.0
3,555,623 - CA264_15165 0.38 -2.5
3,555,857 - CA264_15165 0.65 -1.2
3,555,865 + CA264_15165 0.66 -0.6
3,555,904 + CA264_15165 0.71 -0.6
3,555,904 + CA264_15165 0.71 -1.2
3,555,910 + CA264_15165 0.72 +0.8
3,556,241 + CA264_15170 0.10 -1.4
3,556,266 + CA264_15170 0.14 -0.8
3,556,305 - CA264_15170 0.21 -2.1
3,556,311 + CA264_15170 0.22 -0.5
3,556,312 - CA264_15170 0.22 +0.4
3,556,380 + CA264_15170 0.33 -2.3
3,556,427 + CA264_15170 0.41 -0.2
3,556,597 - CA264_15170 0.69 -2.1
3,556,626 - CA264_15170 0.74 +0.6
3,556,783 + -0.2
3,556,784 - +1.2
3,556,804 - -2.1
3,557,069 + CA264_15175 0.50 +1.9
3,557,235 + CA264_15175 0.82 -0.5
3,557,344 + -0.1
3,557,408 + -0.6
3,557,660 - CA264_15180 0.39 -0.1

Or see this region's nucleotide sequence