Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14520 and CA264_14525 are separated by 29 nucleotides CA264_14525 and CA264_14530 overlap by 4 nucleotides CA264_14530 and CA264_14535 are separated by 8 nucleotides
CA264_14520: CA264_14520 - twin-arginine translocase TatA/TatE family subunit, at 3,407,810 to 3,408,022
_14520
CA264_14525: CA264_14525 - twin-arginine translocase TatA/TatE family subunit, at 3,408,052 to 3,408,270
_14525
CA264_14530: CA264_14530 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 3,408,267 to 3,409,703
_14530
CA264_14535: CA264_14535 - lytic transglycosylase, at 3,409,712 to 3,411,232
_14535
Position (kb)
3408
3409
3410 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3407.288 kb on + strand at 3407.289 kb on - strand at 3407.293 kb on - strand at 3407.293 kb on - strand at 3407.295 kb on - strand at 3407.298 kb on + strand at 3407.298 kb on + strand at 3407.299 kb on - strand at 3407.299 kb on - strand at 3407.299 kb on - strand at 3407.299 kb on - strand at 3407.299 kb on - strand at 3407.299 kb on - strand at 3407.299 kb on - strand at 3407.300 kb on + strand at 3407.300 kb on + strand at 3407.300 kb on + strand at 3407.301 kb on - strand at 3407.326 kb on - strand at 3407.326 kb on - strand at 3407.347 kb on + strand at 3407.368 kb on - strand at 3407.390 kb on + strand at 3407.390 kb on + strand at 3407.656 kb on + strand at 3407.669 kb on + strand at 3407.669 kb on + strand at 3407.670 kb on - strand at 3407.672 kb on - strand at 3407.672 kb on - strand at 3407.686 kb on + strand at 3407.740 kb on - strand at 3408.051 kb on + strand at 3408.055 kb on + strand at 3409.718 kb on + strand at 3409.732 kb on + strand at 3409.924 kb on - strand, within CA264_14535 at 3409.963 kb on + strand, within CA264_14535 at 3409.964 kb on - strand, within CA264_14535 at 3409.964 kb on - strand, within CA264_14535 at 3410.008 kb on - strand, within CA264_14535 at 3410.049 kb on - strand, within CA264_14535 at 3410.102 kb on + strand, within CA264_14535 at 3410.133 kb on + strand, within CA264_14535 at 3410.138 kb on + strand, within CA264_14535 at 3410.139 kb on - strand, within CA264_14535 at 3410.255 kb on + strand, within CA264_14535 at 3410.327 kb on + strand, within CA264_14535 at 3410.327 kb on + strand, within CA264_14535 at 3410.328 kb on - strand, within CA264_14535 at 3410.328 kb on - strand, within CA264_14535 at 3410.328 kb on - strand, within CA264_14535 at 3410.330 kb on + strand, within CA264_14535 at 3410.330 kb on + strand, within CA264_14535 at 3410.330 kb on + strand, within CA264_14535 at 3410.362 kb on + strand, within CA264_14535 at 3410.363 kb on - strand, within CA264_14535 at 3410.465 kb on + strand, within CA264_14535 at 3410.492 kb on + strand, within CA264_14535 at 3410.492 kb on + strand, within CA264_14535 at 3410.504 kb on + strand, within CA264_14535 at 3410.504 kb on + strand, within CA264_14535 at 3410.504 kb on + strand, within CA264_14535 at 3410.505 kb on - strand, within CA264_14535 at 3410.561 kb on + strand, within CA264_14535 at 3410.561 kb on + strand, within CA264_14535 at 3410.571 kb on + strand, within CA264_14535 at 3410.571 kb on + strand, within CA264_14535 at 3410.572 kb on - strand, within CA264_14535 at 3410.688 kb on - strand, within CA264_14535 at 3410.688 kb on - strand, within CA264_14535 at 3410.690 kb on - strand, within CA264_14535
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 3,407,288 + -0.2 3,407,289 - -0.6 3,407,293 - -0.5 3,407,293 - +0.2 3,407,295 - +0.0 3,407,298 + -1.8 3,407,298 + -0.5 3,407,299 - -0.0 3,407,299 - -0.1 3,407,299 - -1.2 3,407,299 - -0.4 3,407,299 - +0.0 3,407,299 - -0.3 3,407,299 - +0.4 3,407,300 + -1.8 3,407,300 + -0.9 3,407,300 + -0.2 3,407,301 - -0.3 3,407,326 - +0.0 3,407,326 - -0.7 3,407,347 + -0.9 3,407,368 - +0.2 3,407,390 + -0.0 3,407,390 + +0.6 3,407,656 + -0.8 3,407,669 + -0.0 3,407,669 + +0.7 3,407,670 - -2.2 3,407,672 - -0.1 3,407,672 - -1.2 3,407,686 + -0.2 3,407,740 - -1.0 3,408,051 + -1.1 3,408,055 + +1.4 3,409,718 + +0.1 3,409,732 + +0.6 3,409,924 - CA264_14535 0.14 +1.2 3,409,963 + CA264_14535 0.17 +0.6 3,409,964 - CA264_14535 0.17 -2.9 3,409,964 - CA264_14535 0.17 -0.9 3,410,008 - CA264_14535 0.19 -0.3 3,410,049 - CA264_14535 0.22 -1.5 3,410,102 + CA264_14535 0.26 -0.2 3,410,133 + CA264_14535 0.28 +0.2 3,410,138 + CA264_14535 0.28 -0.2 3,410,139 - CA264_14535 0.28 +0.4 3,410,255 + CA264_14535 0.36 +0.4 3,410,327 + CA264_14535 0.40 +0.7 3,410,327 + CA264_14535 0.40 -0.8 3,410,328 - CA264_14535 0.40 +0.8 3,410,328 - CA264_14535 0.40 -1.2 3,410,328 - CA264_14535 0.40 -0.7 3,410,330 + CA264_14535 0.41 +0.2 3,410,330 + CA264_14535 0.41 +0.5 3,410,330 + CA264_14535 0.41 +0.3 3,410,362 + CA264_14535 0.43 +0.3 3,410,363 - CA264_14535 0.43 +0.5 3,410,465 + CA264_14535 0.50 +0.9 3,410,492 + CA264_14535 0.51 -0.8 3,410,492 + CA264_14535 0.51 +0.3 3,410,504 + CA264_14535 0.52 +0.3 3,410,504 + CA264_14535 0.52 +0.3 3,410,504 + CA264_14535 0.52 +0.4 3,410,505 - CA264_14535 0.52 +0.3 3,410,561 + CA264_14535 0.56 -0.8 3,410,561 + CA264_14535 0.56 -0.8 3,410,571 + CA264_14535 0.56 +1.3 3,410,571 + CA264_14535 0.56 +0.4 3,410,572 - CA264_14535 0.57 +0.9 3,410,688 - CA264_14535 0.64 -0.2 3,410,688 - CA264_14535 0.64 +0.0 3,410,690 - CA264_14535 0.64 -0.1
Or see this region's nucleotide sequence