Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13070 and CA264_13075 overlap by 1 nucleotides CA264_13075 and CA264_13080 are separated by 151 nucleotides
CA264_13070: CA264_13070 - ribonuclease bn, at 3,047,973 to 3,048,944
_13070
CA264_13075: CA264_13075 - thioesterase, at 3,048,944 to 3,049,354
_13075
CA264_13080: CA264_13080 - aminodeoxychorismate lyase, at 3,049,506 to 3,050,582
_13080
Position (kb)
3048
3049
3050 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3048.038 kb on + strand at 3048.069 kb on + strand at 3048.070 kb on - strand at 3048.071 kb on + strand, within CA264_13070 at 3048.071 kb on + strand, within CA264_13070 at 3048.072 kb on - strand, within CA264_13070 at 3048.133 kb on + strand, within CA264_13070 at 3048.134 kb on - strand, within CA264_13070 at 3048.266 kb on - strand, within CA264_13070 at 3048.266 kb on - strand, within CA264_13070 at 3048.268 kb on + strand, within CA264_13070 at 3048.268 kb on + strand, within CA264_13070 at 3048.269 kb on - strand, within CA264_13070 at 3048.272 kb on + strand, within CA264_13070 at 3048.335 kb on + strand, within CA264_13070 at 3048.338 kb on - strand, within CA264_13070 at 3048.338 kb on - strand, within CA264_13070 at 3048.341 kb on + strand, within CA264_13070 at 3048.341 kb on + strand, within CA264_13070 at 3048.341 kb on + strand, within CA264_13070 at 3048.341 kb on + strand, within CA264_13070 at 3048.342 kb on - strand, within CA264_13070 at 3048.342 kb on - strand, within CA264_13070 at 3048.342 kb on - strand, within CA264_13070 at 3048.343 kb on + strand, within CA264_13070 at 3048.343 kb on + strand, within CA264_13070 at 3048.343 kb on + strand, within CA264_13070 at 3048.344 kb on - strand, within CA264_13070 at 3048.344 kb on - strand, within CA264_13070 at 3048.344 kb on - strand, within CA264_13070 at 3048.344 kb on - strand, within CA264_13070 at 3048.365 kb on - strand, within CA264_13070 at 3048.478 kb on + strand, within CA264_13070 at 3048.479 kb on - strand, within CA264_13070 at 3048.498 kb on - strand, within CA264_13070 at 3048.501 kb on + strand, within CA264_13070 at 3048.502 kb on + strand, within CA264_13070 at 3048.502 kb on + strand, within CA264_13070 at 3048.503 kb on - strand, within CA264_13070 at 3048.503 kb on - strand, within CA264_13070 at 3048.604 kb on - strand, within CA264_13070 at 3048.626 kb on - strand, within CA264_13070 at 3048.678 kb on - strand, within CA264_13070 at 3048.711 kb on + strand, within CA264_13070 at 3048.755 kb on + strand, within CA264_13070 at 3048.755 kb on + strand, within CA264_13070 at 3048.782 kb on - strand, within CA264_13070 at 3048.845 kb on - strand, within CA264_13070 at 3048.900 kb on - strand at 3048.950 kb on - strand at 3048.967 kb on + strand at 3048.974 kb on + strand at 3048.974 kb on + strand at 3048.975 kb on - strand at 3048.975 kb on - strand at 3049.068 kb on + strand, within CA264_13075 at 3049.068 kb on + strand, within CA264_13075 at 3049.069 kb on - strand, within CA264_13075 at 3049.078 kb on - strand, within CA264_13075 at 3049.078 kb on - strand, within CA264_13075 at 3049.089 kb on - strand, within CA264_13075 at 3049.115 kb on + strand, within CA264_13075 at 3049.220 kb on - strand, within CA264_13075 at 3049.222 kb on - strand, within CA264_13075 at 3049.222 kb on - strand, within CA264_13075 at 3049.222 kb on - strand, within CA264_13075 at 3049.270 kb on - strand, within CA264_13075 at 3049.279 kb on - strand, within CA264_13075 at 3049.290 kb on + strand, within CA264_13075 at 3049.297 kb on - strand, within CA264_13075 at 3049.332 kb on - strand at 3049.338 kb on - strand at 3049.357 kb on + strand at 3049.375 kb on - strand at 3049.377 kb on + strand at 3049.378 kb on - strand at 3049.390 kb on + strand at 3049.428 kb on + strand at 3049.624 kb on + strand, within CA264_13080 at 3049.624 kb on + strand, within CA264_13080 at 3049.631 kb on - strand, within CA264_13080 at 3049.631 kb on - strand, within CA264_13080 at 3049.631 kb on - strand, within CA264_13080 at 3049.717 kb on + strand, within CA264_13080 at 3049.843 kb on + strand, within CA264_13080 at 3049.981 kb on + strand, within CA264_13080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 3,048,038 + -1.1 3,048,069 + +0.7 3,048,070 - -0.7 3,048,071 + CA264_13070 0.10 -0.0 3,048,071 + CA264_13070 0.10 +0.3 3,048,072 - CA264_13070 0.10 +0.3 3,048,133 + CA264_13070 0.16 -0.2 3,048,134 - CA264_13070 0.17 +0.0 3,048,266 - CA264_13070 0.30 -1.2 3,048,266 - CA264_13070 0.30 -0.2 3,048,268 + CA264_13070 0.30 -1.2 3,048,268 + CA264_13070 0.30 -1.1 3,048,269 - CA264_13070 0.30 -0.8 3,048,272 + CA264_13070 0.31 -0.5 3,048,335 + CA264_13070 0.37 +0.4 3,048,338 - CA264_13070 0.38 -0.6 3,048,338 - CA264_13070 0.38 -0.4 3,048,341 + CA264_13070 0.38 -0.6 3,048,341 + CA264_13070 0.38 -0.6 3,048,341 + CA264_13070 0.38 -1.9 3,048,341 + CA264_13070 0.38 -0.1 3,048,342 - CA264_13070 0.38 -1.2 3,048,342 - CA264_13070 0.38 -1.9 3,048,342 - CA264_13070 0.38 -3.4 3,048,343 + CA264_13070 0.38 -0.7 3,048,343 + CA264_13070 0.38 +0.0 3,048,343 + CA264_13070 0.38 -1.2 3,048,344 - CA264_13070 0.38 -1.0 3,048,344 - CA264_13070 0.38 -0.4 3,048,344 - CA264_13070 0.38 -0.9 3,048,344 - CA264_13070 0.38 -0.6 3,048,365 - CA264_13070 0.40 -1.4 3,048,478 + CA264_13070 0.52 -0.8 3,048,479 - CA264_13070 0.52 -1.4 3,048,498 - CA264_13070 0.54 -0.8 3,048,501 + CA264_13070 0.54 -0.4 3,048,502 + CA264_13070 0.54 -1.1 3,048,502 + CA264_13070 0.54 -0.3 3,048,503 - CA264_13070 0.55 -1.0 3,048,503 - CA264_13070 0.55 -0.7 3,048,604 - CA264_13070 0.65 -1.3 3,048,626 - CA264_13070 0.67 -1.0 3,048,678 - CA264_13070 0.73 -1.1 3,048,711 + CA264_13070 0.76 -1.0 3,048,755 + CA264_13070 0.80 -0.2 3,048,755 + CA264_13070 0.80 +0.0 3,048,782 - CA264_13070 0.83 -1.4 3,048,845 - CA264_13070 0.90 -0.2 3,048,900 - -1.2 3,048,950 - +0.3 3,048,967 + -0.0 3,048,974 + +0.2 3,048,974 + +0.4 3,048,975 - -0.0 3,048,975 - -0.0 3,049,068 + CA264_13075 0.30 -0.5 3,049,068 + CA264_13075 0.30 +0.0 3,049,069 - CA264_13075 0.30 -0.0 3,049,078 - CA264_13075 0.33 +0.6 3,049,078 - CA264_13075 0.33 +0.6 3,049,089 - CA264_13075 0.35 +0.3 3,049,115 + CA264_13075 0.42 -0.9 3,049,220 - CA264_13075 0.67 +0.2 3,049,222 - CA264_13075 0.68 -0.7 3,049,222 - CA264_13075 0.68 -0.0 3,049,222 - CA264_13075 0.68 +0.1 3,049,270 - CA264_13075 0.79 -0.2 3,049,279 - CA264_13075 0.82 -0.0 3,049,290 + CA264_13075 0.84 +0.2 3,049,297 - CA264_13075 0.86 +0.1 3,049,332 - -0.0 3,049,338 - -0.0 3,049,357 + -0.2 3,049,375 - +0.9 3,049,377 + +1.3 3,049,378 - -0.6 3,049,390 + +0.7 3,049,428 + +0.7 3,049,624 + CA264_13080 0.11 -0.2 3,049,624 + CA264_13080 0.11 -0.7 3,049,631 - CA264_13080 0.12 -1.3 3,049,631 - CA264_13080 0.12 -1.7 3,049,631 - CA264_13080 0.12 -0.2 3,049,717 + CA264_13080 0.20 -1.7 3,049,843 + CA264_13080 0.31 -0.2 3,049,981 + CA264_13080 0.44 -1.2
Or see this region's nucleotide sequence