Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10085 and CA264_10090 are separated by 13 nucleotides CA264_10090 and CA264_10095 are separated by 18 nucleotides CA264_10095 and CA264_10100 are separated by 27 nucleotides
CA264_10085: CA264_10085 - hypothetical protein, at 2,339,382 to 2,339,684
_10085
CA264_10090: CA264_10090 - (2Fe-2S)-binding protein, at 2,339,698 to 2,340,216
_10090
CA264_10095: CA264_10095 - 4Fe-4S ferredoxin, at 2,340,235 to 2,340,813
_10095
CA264_10100: CA264_10100 - nitrite reductase, at 2,340,841 to 2,343,057
_10100
Position (kb)
2340
2341 Strain fitness (log2 ratio)
-1
0
1
2 at 2339.248 kb on - strand at 2339.248 kb on - strand at 2339.274 kb on + strand at 2339.322 kb on - strand at 2339.354 kb on + strand at 2339.383 kb on + strand at 2339.384 kb on - strand at 2339.402 kb on + strand at 2339.405 kb on - strand at 2339.412 kb on + strand at 2339.413 kb on - strand, within CA264_10085 at 2339.413 kb on - strand, within CA264_10085 at 2339.442 kb on - strand, within CA264_10085 at 2339.570 kb on - strand, within CA264_10085 at 2339.570 kb on - strand, within CA264_10085 at 2339.634 kb on - strand, within CA264_10085 at 2339.716 kb on - strand at 2339.726 kb on - strand at 2339.795 kb on - strand, within CA264_10090 at 2339.795 kb on - strand, within CA264_10090 at 2339.881 kb on + strand, within CA264_10090 at 2339.943 kb on - strand, within CA264_10090 at 2340.219 kb on + strand at 2340.219 kb on + strand at 2340.241 kb on + strand at 2340.318 kb on + strand, within CA264_10095 at 2340.395 kb on - strand, within CA264_10095 at 2340.437 kb on + strand, within CA264_10095 at 2340.672 kb on - strand, within CA264_10095 at 2340.805 kb on + strand at 2340.833 kb on - strand at 2340.833 kb on - strand at 2340.835 kb on + strand at 2340.836 kb on - strand at 2340.838 kb on - strand at 2340.838 kb on - strand at 2340.859 kb on + strand at 2340.906 kb on + strand at 2340.907 kb on - strand at 2340.907 kb on - strand at 2340.907 kb on - strand at 2340.907 kb on - strand at 2340.916 kb on + strand at 2340.916 kb on + strand at 2340.916 kb on + strand at 2340.917 kb on - strand at 2340.936 kb on + strand at 2341.106 kb on + strand, within CA264_10100 at 2341.107 kb on - strand, within CA264_10100 at 2341.107 kb on - strand, within CA264_10100 at 2341.250 kb on - strand, within CA264_10100 at 2341.415 kb on + strand, within CA264_10100 at 2341.418 kb on + strand, within CA264_10100 at 2341.450 kb on + strand, within CA264_10100 at 2341.451 kb on - strand, within CA264_10100 at 2341.754 kb on - strand, within CA264_10100 at 2341.754 kb on - strand, within CA264_10100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 2,339,248 - +0.1 2,339,248 - +0.0 2,339,274 + -1.2 2,339,322 - +2.2 2,339,354 + +0.2 2,339,383 + +2.2 2,339,384 - +0.6 2,339,402 + -0.0 2,339,405 - +0.3 2,339,412 + +0.4 2,339,413 - CA264_10085 0.10 -0.7 2,339,413 - CA264_10085 0.10 -0.4 2,339,442 - CA264_10085 0.20 -0.2 2,339,570 - CA264_10085 0.62 +0.3 2,339,570 - CA264_10085 0.62 +0.3 2,339,634 - CA264_10085 0.83 +1.2 2,339,716 - +0.1 2,339,726 - -0.6 2,339,795 - CA264_10090 0.19 -0.5 2,339,795 - CA264_10090 0.19 -0.5 2,339,881 + CA264_10090 0.35 -0.8 2,339,943 - CA264_10090 0.47 +0.4 2,340,219 + -0.3 2,340,219 + -0.3 2,340,241 + +1.2 2,340,318 + CA264_10095 0.14 -1.2 2,340,395 - CA264_10095 0.28 -0.4 2,340,437 + CA264_10095 0.35 -0.1 2,340,672 - CA264_10095 0.75 -0.3 2,340,805 + -0.8 2,340,833 - -0.3 2,340,833 - -0.8 2,340,835 + -0.9 2,340,836 - -0.5 2,340,838 - -1.0 2,340,838 - -0.5 2,340,859 + -0.4 2,340,906 + +0.1 2,340,907 - -0.0 2,340,907 - -0.4 2,340,907 - -0.8 2,340,907 - -1.1 2,340,916 + -0.2 2,340,916 + +0.1 2,340,916 + -0.2 2,340,917 - -0.7 2,340,936 + +0.8 2,341,106 + CA264_10100 0.12 +1.4 2,341,107 - CA264_10100 0.12 -1.4 2,341,107 - CA264_10100 0.12 +1.3 2,341,250 - CA264_10100 0.18 -0.4 2,341,415 + CA264_10100 0.26 +0.6 2,341,418 + CA264_10100 0.26 -0.3 2,341,450 + CA264_10100 0.27 -0.2 2,341,451 - CA264_10100 0.28 -1.4 2,341,754 - CA264_10100 0.41 -0.9 2,341,754 - CA264_10100 0.41 -1.2
Or see this region's nucleotide sequence