Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09850 and CA264_09855 overlap by 11 nucleotides CA264_09855 and CA264_09860 are separated by 31 nucleotides
CA264_09850: CA264_09850 - hypothetical protein, at 2,291,113 to 2,292,294
_09850
CA264_09855: CA264_09855 - hypothetical protein, at 2,292,284 to 2,293,516
_09855
CA264_09860: CA264_09860 - hypothetical protein, at 2,293,548 to 2,294,564
_09860
Position (kb)
2292
2293
2294 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2291.295 kb on - strand, within CA264_09850 at 2291.295 kb on - strand, within CA264_09850 at 2291.359 kb on + strand, within CA264_09850 at 2291.380 kb on + strand, within CA264_09850 at 2291.391 kb on + strand, within CA264_09850 at 2291.392 kb on - strand, within CA264_09850 at 2291.392 kb on - strand, within CA264_09850 at 2291.392 kb on - strand, within CA264_09850 at 2291.412 kb on + strand, within CA264_09850 at 2291.413 kb on - strand, within CA264_09850 at 2291.413 kb on - strand, within CA264_09850 at 2291.482 kb on - strand, within CA264_09850 at 2291.482 kb on - strand, within CA264_09850 at 2291.482 kb on - strand, within CA264_09850 at 2291.574 kb on + strand, within CA264_09850 at 2291.575 kb on - strand, within CA264_09850 at 2291.583 kb on - strand, within CA264_09850 at 2291.592 kb on - strand, within CA264_09850 at 2291.635 kb on + strand, within CA264_09850 at 2291.635 kb on + strand, within CA264_09850 at 2291.646 kb on - strand, within CA264_09850 at 2291.704 kb on + strand, within CA264_09850 at 2291.723 kb on + strand, within CA264_09850 at 2291.723 kb on + strand, within CA264_09850 at 2291.724 kb on - strand, within CA264_09850 at 2291.724 kb on - strand, within CA264_09850 at 2291.757 kb on + strand, within CA264_09850 at 2291.759 kb on + strand, within CA264_09850 at 2291.760 kb on - strand, within CA264_09850 at 2291.760 kb on - strand, within CA264_09850 at 2291.791 kb on - strand, within CA264_09850 at 2291.795 kb on - strand, within CA264_09850 at 2291.816 kb on - strand, within CA264_09850 at 2291.816 kb on - strand, within CA264_09850 at 2291.816 kb on - strand, within CA264_09850 at 2291.819 kb on + strand, within CA264_09850 at 2291.820 kb on - strand, within CA264_09850 at 2291.849 kb on + strand, within CA264_09850 at 2291.850 kb on - strand, within CA264_09850 at 2291.885 kb on + strand, within CA264_09850 at 2291.886 kb on - strand, within CA264_09850 at 2291.886 kb on - strand, within CA264_09850 at 2291.896 kb on + strand, within CA264_09850 at 2291.935 kb on + strand, within CA264_09850 at 2291.935 kb on + strand, within CA264_09850 at 2291.935 kb on + strand, within CA264_09850 at 2291.936 kb on - strand, within CA264_09850 at 2291.936 kb on - strand, within CA264_09850 at 2291.936 kb on - strand, within CA264_09850 at 2291.943 kb on + strand, within CA264_09850 at 2291.948 kb on - strand, within CA264_09850 at 2291.962 kb on + strand, within CA264_09850 at 2291.967 kb on + strand, within CA264_09850 at 2291.968 kb on - strand, within CA264_09850 at 2291.970 kb on + strand, within CA264_09850 at 2291.971 kb on - strand, within CA264_09850 at 2291.991 kb on - strand, within CA264_09850 at 2292.004 kb on + strand, within CA264_09850 at 2292.004 kb on + strand, within CA264_09850 at 2292.005 kb on - strand, within CA264_09850 at 2292.005 kb on - strand, within CA264_09850 at 2292.025 kb on + strand, within CA264_09850 at 2292.034 kb on + strand, within CA264_09850 at 2292.057 kb on + strand, within CA264_09850 at 2292.058 kb on - strand, within CA264_09850 at 2292.143 kb on + strand, within CA264_09850 at 2292.143 kb on + strand, within CA264_09850 at 2292.194 kb on + strand at 2292.285 kb on + strand at 2292.285 kb on + strand at 2292.285 kb on + strand at 2292.286 kb on - strand at 2292.286 kb on - strand at 2292.286 kb on - strand at 2292.286 kb on - strand at 2292.286 kb on - strand at 2292.333 kb on + strand at 2292.334 kb on - strand at 2292.334 kb on - strand at 2292.334 kb on - strand at 2292.363 kb on - strand at 2292.376 kb on - strand at 2292.449 kb on - strand, within CA264_09855 at 2292.489 kb on - strand, within CA264_09855 at 2292.537 kb on + strand, within CA264_09855 at 2292.537 kb on + strand, within CA264_09855 at 2292.559 kb on - strand, within CA264_09855 at 2292.568 kb on + strand, within CA264_09855 at 2292.569 kb on - strand, within CA264_09855 at 2292.576 kb on + strand, within CA264_09855 at 2292.576 kb on + strand, within CA264_09855 at 2292.587 kb on - strand, within CA264_09855 at 2292.606 kb on - strand, within CA264_09855 at 2292.611 kb on + strand, within CA264_09855 at 2292.611 kb on + strand, within CA264_09855 at 2292.612 kb on - strand, within CA264_09855 at 2292.617 kb on + strand, within CA264_09855 at 2292.617 kb on + strand, within CA264_09855 at 2292.618 kb on - strand, within CA264_09855 at 2292.618 kb on - strand, within CA264_09855 at 2292.620 kb on + strand, within CA264_09855 at 2292.646 kb on - strand, within CA264_09855 at 2292.725 kb on - strand, within CA264_09855 at 2292.766 kb on + strand, within CA264_09855 at 2292.816 kb on - strand, within CA264_09855 at 2292.829 kb on + strand, within CA264_09855 at 2292.829 kb on + strand, within CA264_09855 at 2292.830 kb on - strand, within CA264_09855 at 2292.836 kb on + strand, within CA264_09855 at 2292.836 kb on + strand, within CA264_09855 at 2292.837 kb on - strand, within CA264_09855 at 2292.839 kb on + strand, within CA264_09855 at 2292.839 kb on + strand, within CA264_09855 at 2292.839 kb on + strand, within CA264_09855 at 2292.840 kb on - strand, within CA264_09855 at 2292.840 kb on - strand, within CA264_09855 at 2292.902 kb on - strand, within CA264_09855 at 2292.999 kb on - strand, within CA264_09855 at 2293.016 kb on - strand, within CA264_09855 at 2293.042 kb on - strand, within CA264_09855 at 2293.096 kb on + strand, within CA264_09855 at 2293.102 kb on + strand, within CA264_09855 at 2293.103 kb on - strand, within CA264_09855 at 2293.115 kb on + strand, within CA264_09855 at 2293.116 kb on - strand, within CA264_09855 at 2293.116 kb on - strand, within CA264_09855 at 2293.116 kb on - strand, within CA264_09855 at 2293.116 kb on - strand, within CA264_09855 at 2293.116 kb on - strand, within CA264_09855 at 2293.161 kb on - strand, within CA264_09855 at 2293.161 kb on - strand, within CA264_09855 at 2293.221 kb on + strand, within CA264_09855 at 2293.247 kb on - strand, within CA264_09855 at 2293.248 kb on + strand, within CA264_09855 at 2293.257 kb on + strand, within CA264_09855 at 2293.272 kb on - strand, within CA264_09855 at 2293.284 kb on - strand, within CA264_09855 at 2293.284 kb on - strand, within CA264_09855 at 2293.287 kb on + strand, within CA264_09855 at 2293.303 kb on + strand, within CA264_09855 at 2293.304 kb on - strand, within CA264_09855 at 2293.308 kb on + strand, within CA264_09855 at 2293.309 kb on - strand, within CA264_09855 at 2293.338 kb on + strand, within CA264_09855 at 2293.344 kb on + strand, within CA264_09855 at 2293.377 kb on - strand, within CA264_09855 at 2293.381 kb on + strand, within CA264_09855 at 2293.381 kb on + strand, within CA264_09855 at 2293.414 kb on + strand at 2293.466 kb on + strand at 2293.475 kb on - strand at 2293.504 kb on + strand at 2293.504 kb on + strand at 2293.504 kb on + strand at 2293.504 kb on + strand at 2293.528 kb on + strand at 2293.529 kb on - strand at 2293.530 kb on + strand at 2293.549 kb on + strand at 2293.569 kb on + strand at 2293.666 kb on - strand, within CA264_09860 at 2293.688 kb on + strand, within CA264_09860 at 2293.689 kb on - strand, within CA264_09860 at 2293.720 kb on - strand, within CA264_09860 at 2293.730 kb on - strand, within CA264_09860 at 2293.730 kb on - strand, within CA264_09860 at 2293.730 kb on - strand, within CA264_09860 at 2293.828 kb on + strand, within CA264_09860 at 2293.919 kb on + strand, within CA264_09860 at 2293.920 kb on - strand, within CA264_09860 at 2293.928 kb on + strand, within CA264_09860 at 2293.929 kb on - strand, within CA264_09860 at 2293.929 kb on - strand, within CA264_09860 at 2293.932 kb on - strand, within CA264_09860 at 2293.932 kb on - strand, within CA264_09860 at 2293.933 kb on + strand, within CA264_09860 at 2293.933 kb on + strand, within CA264_09860 at 2293.934 kb on - strand, within CA264_09860 at 2293.955 kb on + strand, within CA264_09860 at 2293.955 kb on + strand, within CA264_09860 at 2293.961 kb on - strand, within CA264_09860 at 2293.961 kb on - strand, within CA264_09860 at 2293.976 kb on + strand, within CA264_09860 at 2293.991 kb on + strand, within CA264_09860 at 2293.992 kb on - strand, within CA264_09860 at 2294.018 kb on - strand, within CA264_09860 at 2294.088 kb on + strand, within CA264_09860 at 2294.089 kb on - strand, within CA264_09860 at 2294.106 kb on + strand, within CA264_09860 at 2294.106 kb on + strand, within CA264_09860 at 2294.159 kb on - strand, within CA264_09860 at 2294.213 kb on - strand, within CA264_09860 at 2294.227 kb on + strand, within CA264_09860 at 2294.227 kb on + strand, within CA264_09860 at 2294.227 kb on + strand, within CA264_09860 at 2294.240 kb on + strand, within CA264_09860 at 2294.251 kb on + strand, within CA264_09860 at 2294.285 kb on - strand, within CA264_09860 at 2294.285 kb on - strand, within CA264_09860 at 2294.304 kb on + strand, within CA264_09860 at 2294.305 kb on - strand, within CA264_09860 at 2294.353 kb on - strand, within CA264_09860 at 2294.353 kb on - strand, within CA264_09860 at 2294.499 kb on - strand at 2294.503 kb on + strand at 2294.504 kb on - strand at 2294.509 kb on + strand at 2294.509 kb on + strand at 2294.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 2,291,295 - CA264_09850 0.15 -0.0 2,291,295 - CA264_09850 0.15 +0.7 2,291,359 + CA264_09850 0.21 +0.4 2,291,380 + CA264_09850 0.23 +0.7 2,291,391 + CA264_09850 0.24 -1.0 2,291,392 - CA264_09850 0.24 -0.5 2,291,392 - CA264_09850 0.24 -0.2 2,291,392 - CA264_09850 0.24 +0.2 2,291,412 + CA264_09850 0.25 -0.0 2,291,413 - CA264_09850 0.25 -0.6 2,291,413 - CA264_09850 0.25 +0.7 2,291,482 - CA264_09850 0.31 -0.2 2,291,482 - CA264_09850 0.31 -0.4 2,291,482 - CA264_09850 0.31 +0.3 2,291,574 + CA264_09850 0.39 +0.8 2,291,575 - CA264_09850 0.39 -0.0 2,291,583 - CA264_09850 0.40 -1.3 2,291,592 - CA264_09850 0.41 -0.0 2,291,635 + CA264_09850 0.44 +0.2 2,291,635 + CA264_09850 0.44 -0.3 2,291,646 - CA264_09850 0.45 -1.5 2,291,704 + CA264_09850 0.50 +0.2 2,291,723 + CA264_09850 0.52 +0.4 2,291,723 + CA264_09850 0.52 -0.0 2,291,724 - CA264_09850 0.52 -0.4 2,291,724 - CA264_09850 0.52 +0.2 2,291,757 + CA264_09850 0.54 -0.2 2,291,759 + CA264_09850 0.55 +0.0 2,291,760 - CA264_09850 0.55 -0.4 2,291,760 - CA264_09850 0.55 -0.3 2,291,791 - CA264_09850 0.57 +0.2 2,291,795 - CA264_09850 0.58 -0.5 2,291,816 - CA264_09850 0.59 -0.8 2,291,816 - CA264_09850 0.59 +0.1 2,291,816 - CA264_09850 0.59 -0.8 2,291,819 + CA264_09850 0.60 +1.3 2,291,820 - CA264_09850 0.60 -0.0 2,291,849 + CA264_09850 0.62 +0.0 2,291,850 - CA264_09850 0.62 +0.4 2,291,885 + CA264_09850 0.65 +0.3 2,291,886 - CA264_09850 0.65 +1.0 2,291,886 - CA264_09850 0.65 +0.9 2,291,896 + CA264_09850 0.66 -0.3 2,291,935 + CA264_09850 0.70 +2.0 2,291,935 + CA264_09850 0.70 +0.8 2,291,935 + CA264_09850 0.70 +0.1 2,291,936 - CA264_09850 0.70 -0.3 2,291,936 - CA264_09850 0.70 -0.6 2,291,936 - CA264_09850 0.70 +0.2 2,291,943 + CA264_09850 0.70 +0.9 2,291,948 - CA264_09850 0.71 +0.2 2,291,962 + CA264_09850 0.72 +0.2 2,291,967 + CA264_09850 0.72 -1.3 2,291,968 - CA264_09850 0.72 -0.0 2,291,970 + CA264_09850 0.73 -0.4 2,291,971 - CA264_09850 0.73 -0.1 2,291,991 - CA264_09850 0.74 +0.2 2,292,004 + CA264_09850 0.75 -1.0 2,292,004 + CA264_09850 0.75 -0.4 2,292,005 - CA264_09850 0.75 -0.1 2,292,005 - CA264_09850 0.75 +1.7 2,292,025 + CA264_09850 0.77 +1.2 2,292,034 + CA264_09850 0.78 +0.6 2,292,057 + CA264_09850 0.80 -0.5 2,292,058 - CA264_09850 0.80 +0.1 2,292,143 + CA264_09850 0.87 -0.5 2,292,143 + CA264_09850 0.87 -0.2 2,292,194 + -1.4 2,292,285 + +1.7 2,292,285 + +0.0 2,292,285 + -0.2 2,292,286 - +1.8 2,292,286 - -0.1 2,292,286 - +0.8 2,292,286 - +0.7 2,292,286 - -0.3 2,292,333 + +0.2 2,292,334 - -0.7 2,292,334 - -0.3 2,292,334 - +1.4 2,292,363 - +0.9 2,292,376 - +0.8 2,292,449 - CA264_09855 0.13 +0.3 2,292,489 - CA264_09855 0.17 -0.4 2,292,537 + CA264_09855 0.21 -0.2 2,292,537 + CA264_09855 0.21 -1.2 2,292,559 - CA264_09855 0.22 +0.1 2,292,568 + CA264_09855 0.23 +0.8 2,292,569 - CA264_09855 0.23 -0.3 2,292,576 + CA264_09855 0.24 +0.3 2,292,576 + CA264_09855 0.24 -0.2 2,292,587 - CA264_09855 0.25 -0.0 2,292,606 - CA264_09855 0.26 -0.5 2,292,611 + CA264_09855 0.27 -0.1 2,292,611 + CA264_09855 0.27 -0.2 2,292,612 - CA264_09855 0.27 -0.2 2,292,617 + CA264_09855 0.27 +0.4 2,292,617 + CA264_09855 0.27 -1.1 2,292,618 - CA264_09855 0.27 -0.1 2,292,618 - CA264_09855 0.27 +0.1 2,292,620 + CA264_09855 0.27 +0.4 2,292,646 - CA264_09855 0.29 +0.0 2,292,725 - CA264_09855 0.36 +1.7 2,292,766 + CA264_09855 0.39 +0.6 2,292,816 - CA264_09855 0.43 +0.5 2,292,829 + CA264_09855 0.44 -0.7 2,292,829 + CA264_09855 0.44 -0.3 2,292,830 - CA264_09855 0.44 +0.5 2,292,836 + CA264_09855 0.45 -0.6 2,292,836 + CA264_09855 0.45 +0.9 2,292,837 - CA264_09855 0.45 -1.6 2,292,839 + CA264_09855 0.45 +0.6 2,292,839 + CA264_09855 0.45 -0.1 2,292,839 + CA264_09855 0.45 +0.6 2,292,840 - CA264_09855 0.45 +0.1 2,292,840 - CA264_09855 0.45 -0.2 2,292,902 - CA264_09855 0.50 +1.0 2,292,999 - CA264_09855 0.58 +0.1 2,293,016 - CA264_09855 0.59 -0.1 2,293,042 - CA264_09855 0.61 -0.6 2,293,096 + CA264_09855 0.66 +0.6 2,293,102 + CA264_09855 0.66 -1.1 2,293,103 - CA264_09855 0.66 -0.1 2,293,115 + CA264_09855 0.67 -0.1 2,293,116 - CA264_09855 0.67 +0.3 2,293,116 - CA264_09855 0.67 +0.1 2,293,116 - CA264_09855 0.67 -0.4 2,293,116 - CA264_09855 0.67 +0.2 2,293,116 - CA264_09855 0.67 +0.1 2,293,161 - CA264_09855 0.71 +0.1 2,293,161 - CA264_09855 0.71 -0.4 2,293,221 + CA264_09855 0.76 +0.0 2,293,247 - CA264_09855 0.78 -1.4 2,293,248 + CA264_09855 0.78 +1.4 2,293,257 + CA264_09855 0.79 +0.4 2,293,272 - CA264_09855 0.80 -0.9 2,293,284 - CA264_09855 0.81 -0.0 2,293,284 - CA264_09855 0.81 -0.1 2,293,287 + CA264_09855 0.81 +0.3 2,293,303 + CA264_09855 0.83 +0.6 2,293,304 - CA264_09855 0.83 -0.1 2,293,308 + CA264_09855 0.83 -0.3 2,293,309 - CA264_09855 0.83 +0.4 2,293,338 + CA264_09855 0.85 +0.7 2,293,344 + CA264_09855 0.86 +0.8 2,293,377 - CA264_09855 0.89 -1.1 2,293,381 + CA264_09855 0.89 -0.3 2,293,381 + CA264_09855 0.89 +0.6 2,293,414 + -1.0 2,293,466 + -0.8 2,293,475 - +0.7 2,293,504 + +0.1 2,293,504 + -1.2 2,293,504 + -0.4 2,293,504 + -0.4 2,293,528 + -0.3 2,293,529 - +0.0 2,293,530 + -0.4 2,293,549 + -0.5 2,293,569 + -0.4 2,293,666 - CA264_09860 0.12 -1.1 2,293,688 + CA264_09860 0.14 -0.2 2,293,689 - CA264_09860 0.14 +0.8 2,293,720 - CA264_09860 0.17 -2.0 2,293,730 - CA264_09860 0.18 -0.2 2,293,730 - CA264_09860 0.18 -0.2 2,293,730 - CA264_09860 0.18 -0.4 2,293,828 + CA264_09860 0.28 -0.0 2,293,919 + CA264_09860 0.36 +0.5 2,293,920 - CA264_09860 0.37 -0.5 2,293,928 + CA264_09860 0.37 -0.3 2,293,929 - CA264_09860 0.37 -0.1 2,293,929 - CA264_09860 0.37 -0.3 2,293,932 - CA264_09860 0.38 -0.6 2,293,932 - CA264_09860 0.38 +0.2 2,293,933 + CA264_09860 0.38 +0.1 2,293,933 + CA264_09860 0.38 +0.9 2,293,934 - CA264_09860 0.38 +0.1 2,293,955 + CA264_09860 0.40 +0.2 2,293,955 + CA264_09860 0.40 +0.2 2,293,961 - CA264_09860 0.41 +0.2 2,293,961 - CA264_09860 0.41 +0.2 2,293,976 + CA264_09860 0.42 -0.1 2,293,991 + CA264_09860 0.44 +0.0 2,293,992 - CA264_09860 0.44 -0.8 2,294,018 - CA264_09860 0.46 +0.3 2,294,088 + CA264_09860 0.53 +0.1 2,294,089 - CA264_09860 0.53 -0.0 2,294,106 + CA264_09860 0.55 +0.3 2,294,106 + CA264_09860 0.55 -0.6 2,294,159 - CA264_09860 0.60 -1.9 2,294,213 - CA264_09860 0.65 +0.2 2,294,227 + CA264_09860 0.67 +0.4 2,294,227 + CA264_09860 0.67 -0.3 2,294,227 + CA264_09860 0.67 -1.9 2,294,240 + CA264_09860 0.68 -1.8 2,294,251 + CA264_09860 0.69 -0.6 2,294,285 - CA264_09860 0.72 -1.0 2,294,285 - CA264_09860 0.72 +0.1 2,294,304 + CA264_09860 0.74 -0.4 2,294,305 - CA264_09860 0.74 -0.1 2,294,353 - CA264_09860 0.79 -0.1 2,294,353 - CA264_09860 0.79 -0.4 2,294,499 - -0.1 2,294,503 + -0.8 2,294,504 - +0.2 2,294,509 + +1.2 2,294,509 + +0.4 2,294,510 - +0.9
Or see this region's nucleotide sequence