Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08770 and CA264_08775 are separated by 652 nucleotides CA264_08775 and CA264_08780 are separated by 70 nucleotides CA264_08780 and CA264_08785 are separated by 113 nucleotides
CA264_08770: CA264_08770 - SusC/RagA family TonB-linked outer membrane protein, at 2,045,980 to 2,049,009
_08770
CA264_08775: CA264_08775 - ZIP family metal transporter, at 2,049,662 to 2,050,486
_08775
CA264_08780: CA264_08780 - hypothetical protein, at 2,050,557 to 2,051,318
_08780
CA264_08785: CA264_08785 - hypothetical protein, at 2,051,432 to 2,052,622
_08785
Position (kb)
2049
2050
2051 Strain fitness (log2 ratio)
-2
-1
0
1 at 2048.745 kb on + strand at 2048.745 kb on + strand at 2048.745 kb on + strand at 2048.746 kb on - strand at 2048.749 kb on - strand at 2048.803 kb on + strand at 2048.814 kb on + strand at 2048.832 kb on + strand at 2048.839 kb on + strand at 2048.850 kb on + strand at 2048.856 kb on + strand at 2048.888 kb on - strand at 2048.901 kb on + strand at 2048.901 kb on + strand at 2048.902 kb on - strand at 2048.948 kb on - strand at 2048.953 kb on - strand at 2048.979 kb on + strand at 2048.979 kb on + strand at 2049.010 kb on - strand at 2049.051 kb on + strand at 2049.051 kb on + strand at 2049.052 kb on - strand at 2049.052 kb on - strand at 2049.052 kb on - strand at 2049.052 kb on - strand at 2049.077 kb on - strand at 2049.077 kb on - strand at 2049.243 kb on + strand at 2049.589 kb on - strand at 2049.613 kb on + strand at 2049.736 kb on - strand at 2049.761 kb on + strand, within CA264_08775 at 2049.761 kb on + strand, within CA264_08775 at 2049.776 kb on + strand, within CA264_08775 at 2049.776 kb on + strand, within CA264_08775 at 2049.776 kb on + strand, within CA264_08775 at 2049.780 kb on + strand, within CA264_08775 at 2049.834 kb on + strand, within CA264_08775 at 2049.834 kb on + strand, within CA264_08775 at 2049.835 kb on - strand, within CA264_08775 at 2049.835 kb on - strand, within CA264_08775 at 2050.012 kb on + strand, within CA264_08775 at 2050.012 kb on + strand, within CA264_08775 at 2050.064 kb on + strand, within CA264_08775 at 2050.064 kb on + strand, within CA264_08775 at 2050.076 kb on + strand, within CA264_08775 at 2050.077 kb on - strand, within CA264_08775 at 2050.157 kb on - strand, within CA264_08775 at 2050.342 kb on + strand, within CA264_08775 at 2050.342 kb on + strand, within CA264_08775 at 2050.343 kb on - strand, within CA264_08775 at 2050.343 kb on - strand, within CA264_08775 at 2050.343 kb on - strand, within CA264_08775 at 2050.343 kb on - strand, within CA264_08775 at 2050.343 kb on - strand, within CA264_08775 at 2050.343 kb on - strand, within CA264_08775 at 2050.364 kb on - strand, within CA264_08775 at 2050.407 kb on - strand at 2050.443 kb on + strand at 2050.486 kb on + strand at 2050.486 kb on + strand at 2050.487 kb on - strand at 2050.487 kb on - strand at 2050.588 kb on + strand at 2050.588 kb on + strand at 2050.661 kb on + strand, within CA264_08780 at 2050.666 kb on + strand, within CA264_08780 at 2050.709 kb on + strand, within CA264_08780 at 2050.709 kb on + strand, within CA264_08780 at 2050.709 kb on + strand, within CA264_08780 at 2050.709 kb on + strand, within CA264_08780 at 2050.710 kb on - strand, within CA264_08780 at 2050.710 kb on - strand, within CA264_08780 at 2050.710 kb on - strand, within CA264_08780 at 2050.710 kb on - strand, within CA264_08780 at 2050.713 kb on + strand, within CA264_08780 at 2050.779 kb on - strand, within CA264_08780 at 2050.844 kb on + strand, within CA264_08780 at 2050.887 kb on + strand, within CA264_08780 at 2050.932 kb on + strand, within CA264_08780 at 2050.945 kb on + strand, within CA264_08780 at 2051.072 kb on + strand, within CA264_08780 at 2051.073 kb on - strand, within CA264_08780 at 2051.083 kb on + strand, within CA264_08780 at 2051.178 kb on + strand, within CA264_08780 at 2051.178 kb on + strand, within CA264_08780 at 2051.187 kb on + strand, within CA264_08780 at 2051.187 kb on + strand, within CA264_08780 at 2051.187 kb on + strand, within CA264_08780 at 2051.187 kb on + strand, within CA264_08780 at 2051.188 kb on - strand, within CA264_08780 at 2051.188 kb on - strand, within CA264_08780 at 2051.188 kb on - strand, within CA264_08780 at 2051.190 kb on - strand, within CA264_08780 at 2051.228 kb on + strand, within CA264_08780 at 2051.229 kb on - strand, within CA264_08780 at 2051.229 kb on - strand, within CA264_08780 at 2051.313 kb on + strand at 2051.314 kb on - strand at 2051.318 kb on + strand at 2051.318 kb on + strand at 2051.425 kb on + strand at 2051.484 kb on + strand at 2051.484 kb on + strand at 2051.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 2,048,745 + -0.3 2,048,745 + -0.4 2,048,745 + +0.6 2,048,746 - -0.5 2,048,749 - +0.0 2,048,803 + +0.5 2,048,814 + -0.3 2,048,832 + -0.8 2,048,839 + -0.1 2,048,850 + -1.4 2,048,856 + -0.6 2,048,888 - +0.2 2,048,901 + +0.2 2,048,901 + -0.9 2,048,902 - -1.7 2,048,948 - +1.0 2,048,953 - +0.0 2,048,979 + +0.5 2,048,979 + -0.4 2,049,010 - -0.2 2,049,051 + -0.0 2,049,051 + +0.3 2,049,052 - -0.5 2,049,052 - -0.9 2,049,052 - -0.4 2,049,052 - -0.6 2,049,077 - -0.7 2,049,077 - +0.4 2,049,243 + +0.0 2,049,589 - +0.3 2,049,613 + +0.2 2,049,736 - -0.3 2,049,761 + CA264_08775 0.12 -1.5 2,049,761 + CA264_08775 0.12 -0.7 2,049,776 + CA264_08775 0.14 -0.3 2,049,776 + CA264_08775 0.14 -0.4 2,049,776 + CA264_08775 0.14 +0.5 2,049,780 + CA264_08775 0.14 -0.4 2,049,834 + CA264_08775 0.21 -0.5 2,049,834 + CA264_08775 0.21 +0.0 2,049,835 - CA264_08775 0.21 -1.6 2,049,835 - CA264_08775 0.21 -0.4 2,050,012 + CA264_08775 0.42 +0.3 2,050,012 + CA264_08775 0.42 +1.1 2,050,064 + CA264_08775 0.49 +0.6 2,050,064 + CA264_08775 0.49 -0.2 2,050,076 + CA264_08775 0.50 -0.4 2,050,077 - CA264_08775 0.50 -0.7 2,050,157 - CA264_08775 0.60 -0.7 2,050,342 + CA264_08775 0.82 -0.1 2,050,342 + CA264_08775 0.82 -1.8 2,050,343 - CA264_08775 0.83 -0.0 2,050,343 - CA264_08775 0.83 -0.2 2,050,343 - CA264_08775 0.83 -0.3 2,050,343 - CA264_08775 0.83 +1.0 2,050,343 - CA264_08775 0.83 -0.5 2,050,343 - CA264_08775 0.83 +0.7 2,050,364 - CA264_08775 0.85 +0.1 2,050,407 - -0.5 2,050,443 + +0.1 2,050,486 + +0.3 2,050,486 + +1.5 2,050,487 - +0.3 2,050,487 - +0.8 2,050,588 + +0.4 2,050,588 + +0.7 2,050,661 + CA264_08780 0.14 +1.1 2,050,666 + CA264_08780 0.14 +0.4 2,050,709 + CA264_08780 0.20 +0.4 2,050,709 + CA264_08780 0.20 +1.2 2,050,709 + CA264_08780 0.20 -0.1 2,050,709 + CA264_08780 0.20 +1.5 2,050,710 - CA264_08780 0.20 +1.1 2,050,710 - CA264_08780 0.20 +0.4 2,050,710 - CA264_08780 0.20 +1.7 2,050,710 - CA264_08780 0.20 +0.8 2,050,713 + CA264_08780 0.20 +0.5 2,050,779 - CA264_08780 0.29 +1.0 2,050,844 + CA264_08780 0.38 +0.7 2,050,887 + CA264_08780 0.43 +0.9 2,050,932 + CA264_08780 0.49 +0.4 2,050,945 + CA264_08780 0.51 -0.0 2,051,072 + CA264_08780 0.68 +0.2 2,051,073 - CA264_08780 0.68 +0.9 2,051,083 + CA264_08780 0.69 -0.7 2,051,178 + CA264_08780 0.81 +0.6 2,051,178 + CA264_08780 0.81 +0.7 2,051,187 + CA264_08780 0.83 +0.5 2,051,187 + CA264_08780 0.83 -0.4 2,051,187 + CA264_08780 0.83 +0.5 2,051,187 + CA264_08780 0.83 +0.2 2,051,188 - CA264_08780 0.83 +0.8 2,051,188 - CA264_08780 0.83 +0.2 2,051,188 - CA264_08780 0.83 -1.6 2,051,190 - CA264_08780 0.83 +1.2 2,051,228 + CA264_08780 0.88 -1.0 2,051,229 - CA264_08780 0.88 +0.9 2,051,229 - CA264_08780 0.88 +0.4 2,051,313 + +0.5 2,051,314 - +0.6 2,051,318 + +0.2 2,051,318 + +1.1 2,051,425 + -2.2 2,051,484 + +0.1 2,051,484 + -0.1 2,051,485 - -0.0
Or see this region's nucleotide sequence