Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08675 and CA264_08680 are separated by 76 nucleotides CA264_08680 and CA264_08685 are separated by 96 nucleotides
CA264_08675: CA264_08675 - hypothetical protein, at 2,013,300 to 2,014,349
_08675
CA264_08680: CA264_08680 - glycoside hydrolase, at 2,014,426 to 2,015,604
_08680
CA264_08685: CA264_08685 - class I and II aminotransferase, at 2,015,701 to 2,016,789
_08685
Position (kb)
2014
2015
2016 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2013.542 kb on - strand, within CA264_08675 at 2013.561 kb on + strand, within CA264_08675 at 2013.561 kb on + strand, within CA264_08675 at 2013.562 kb on - strand, within CA264_08675 at 2013.562 kb on - strand, within CA264_08675 at 2013.649 kb on + strand, within CA264_08675 at 2013.650 kb on - strand, within CA264_08675 at 2013.664 kb on + strand, within CA264_08675 at 2013.667 kb on + strand, within CA264_08675 at 2013.668 kb on - strand, within CA264_08675 at 2013.668 kb on - strand, within CA264_08675 at 2013.668 kb on - strand, within CA264_08675 at 2013.688 kb on + strand, within CA264_08675 at 2013.688 kb on + strand, within CA264_08675 at 2013.688 kb on + strand, within CA264_08675 at 2013.689 kb on - strand, within CA264_08675 at 2013.689 kb on - strand, within CA264_08675 at 2013.689 kb on - strand, within CA264_08675 at 2013.762 kb on + strand, within CA264_08675 at 2013.762 kb on + strand, within CA264_08675 at 2013.762 kb on + strand, within CA264_08675 at 2013.763 kb on - strand, within CA264_08675 at 2013.781 kb on + strand, within CA264_08675 at 2013.848 kb on + strand, within CA264_08675 at 2013.848 kb on + strand, within CA264_08675 at 2013.906 kb on + strand, within CA264_08675 at 2014.017 kb on - strand, within CA264_08675 at 2014.105 kb on - strand, within CA264_08675 at 2014.105 kb on - strand, within CA264_08675 at 2014.170 kb on - strand, within CA264_08675 at 2014.217 kb on - strand, within CA264_08675 at 2014.271 kb on - strand at 2014.300 kb on + strand at 2014.301 kb on - strand at 2014.408 kb on + strand at 2014.410 kb on + strand at 2014.433 kb on + strand at 2014.434 kb on - strand at 2014.434 kb on - strand at 2014.543 kb on - strand at 2014.543 kb on - strand at 2014.761 kb on + strand, within CA264_08680 at 2014.762 kb on - strand, within CA264_08680 at 2014.796 kb on - strand, within CA264_08680 at 2015.007 kb on - strand, within CA264_08680 at 2015.007 kb on - strand, within CA264_08680 at 2015.063 kb on + strand, within CA264_08680 at 2015.160 kb on - strand, within CA264_08680 at 2015.204 kb on + strand, within CA264_08680 at 2015.336 kb on - strand, within CA264_08680 at 2015.341 kb on + strand, within CA264_08680 at 2015.341 kb on + strand, within CA264_08680 at 2015.341 kb on + strand, within CA264_08680 at 2015.350 kb on + strand, within CA264_08680 at 2015.355 kb on - strand, within CA264_08680 at 2015.373 kb on + strand, within CA264_08680 at 2015.373 kb on + strand, within CA264_08680 at 2015.374 kb on - strand, within CA264_08680 at 2015.583 kb on + strand at 2015.610 kb on + strand at 2015.678 kb on + strand at 2015.679 kb on - strand at 2015.680 kb on + strand at 2015.687 kb on - strand at 2015.703 kb on - strand at 2015.734 kb on + strand at 2015.879 kb on + strand, within CA264_08685 at 2015.880 kb on - strand, within CA264_08685 at 2015.889 kb on + strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2015.962 kb on - strand, within CA264_08685 at 2016.014 kb on + strand, within CA264_08685 at 2016.026 kb on + strand, within CA264_08685 at 2016.100 kb on + strand, within CA264_08685 at 2016.118 kb on + strand, within CA264_08685 at 2016.154 kb on + strand, within CA264_08685 at 2016.169 kb on - strand, within CA264_08685 at 2016.169 kb on - strand, within CA264_08685 at 2016.171 kb on - strand, within CA264_08685 at 2016.188 kb on + strand, within CA264_08685 at 2016.189 kb on - strand, within CA264_08685 at 2016.190 kb on + strand, within CA264_08685 at 2016.190 kb on + strand, within CA264_08685 at 2016.192 kb on + strand, within CA264_08685 at 2016.192 kb on + strand, within CA264_08685 at 2016.244 kb on + strand, within CA264_08685 at 2016.245 kb on - strand, within CA264_08685 at 2016.250 kb on - strand, within CA264_08685 at 2016.294 kb on - strand, within CA264_08685 at 2016.468 kb on - strand, within CA264_08685
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 2,013,542 - CA264_08675 0.23 -0.9 2,013,561 + CA264_08675 0.25 -0.2 2,013,561 + CA264_08675 0.25 +0.1 2,013,562 - CA264_08675 0.25 -1.2 2,013,562 - CA264_08675 0.25 +1.1 2,013,649 + CA264_08675 0.33 -0.6 2,013,650 - CA264_08675 0.33 +0.5 2,013,664 + CA264_08675 0.35 -1.2 2,013,667 + CA264_08675 0.35 -0.1 2,013,668 - CA264_08675 0.35 -0.5 2,013,668 - CA264_08675 0.35 +0.2 2,013,668 - CA264_08675 0.35 -0.4 2,013,688 + CA264_08675 0.37 +0.4 2,013,688 + CA264_08675 0.37 -1.4 2,013,688 + CA264_08675 0.37 -1.2 2,013,689 - CA264_08675 0.37 -0.6 2,013,689 - CA264_08675 0.37 -1.9 2,013,689 - CA264_08675 0.37 -1.4 2,013,762 + CA264_08675 0.44 -0.2 2,013,762 + CA264_08675 0.44 -1.1 2,013,762 + CA264_08675 0.44 -0.4 2,013,763 - CA264_08675 0.44 -1.9 2,013,781 + CA264_08675 0.46 -0.1 2,013,848 + CA264_08675 0.52 -0.7 2,013,848 + CA264_08675 0.52 +1.2 2,013,906 + CA264_08675 0.58 -0.2 2,014,017 - CA264_08675 0.68 +0.2 2,014,105 - CA264_08675 0.77 -0.6 2,014,105 - CA264_08675 0.77 +0.9 2,014,170 - CA264_08675 0.83 -0.0 2,014,217 - CA264_08675 0.87 -0.5 2,014,271 - -1.8 2,014,300 + +1.3 2,014,301 - +0.6 2,014,408 + +0.1 2,014,410 + -1.2 2,014,433 + -0.1 2,014,434 - -0.2 2,014,434 - -0.4 2,014,543 - +1.0 2,014,543 - -0.3 2,014,761 + CA264_08680 0.28 +0.3 2,014,762 - CA264_08680 0.28 +1.1 2,014,796 - CA264_08680 0.31 +0.6 2,015,007 - CA264_08680 0.49 -0.5 2,015,007 - CA264_08680 0.49 +0.1 2,015,063 + CA264_08680 0.54 +0.1 2,015,160 - CA264_08680 0.62 +0.2 2,015,204 + CA264_08680 0.66 +0.1 2,015,336 - CA264_08680 0.77 -1.5 2,015,341 + CA264_08680 0.78 +1.7 2,015,341 + CA264_08680 0.78 -0.8 2,015,341 + CA264_08680 0.78 -0.2 2,015,350 + CA264_08680 0.78 -0.7 2,015,355 - CA264_08680 0.79 +0.6 2,015,373 + CA264_08680 0.80 -0.2 2,015,373 + CA264_08680 0.80 -0.8 2,015,374 - CA264_08680 0.80 +0.1 2,015,583 + +1.8 2,015,610 + -0.0 2,015,678 + -0.0 2,015,679 - -0.1 2,015,680 + +0.0 2,015,687 - +0.4 2,015,703 - -0.5 2,015,734 + +0.5 2,015,879 + CA264_08685 0.16 -0.4 2,015,880 - CA264_08685 0.16 -0.0 2,015,889 + CA264_08685 0.17 +0.5 2,015,962 - CA264_08685 0.24 -0.6 2,015,962 - CA264_08685 0.24 -0.1 2,015,962 - CA264_08685 0.24 -0.6 2,016,014 + CA264_08685 0.29 -0.3 2,016,026 + CA264_08685 0.30 -0.0 2,016,100 + CA264_08685 0.37 -0.9 2,016,118 + CA264_08685 0.38 +0.2 2,016,154 + CA264_08685 0.42 +1.1 2,016,169 - CA264_08685 0.43 -0.1 2,016,169 - CA264_08685 0.43 -0.7 2,016,171 - CA264_08685 0.43 -0.7 2,016,188 + CA264_08685 0.45 +0.1 2,016,189 - CA264_08685 0.45 +0.0 2,016,190 + CA264_08685 0.45 -0.0 2,016,190 + CA264_08685 0.45 -0.1 2,016,192 + CA264_08685 0.45 +0.0 2,016,192 + CA264_08685 0.45 +0.0 2,016,244 + CA264_08685 0.50 -0.2 2,016,245 - CA264_08685 0.50 +1.5 2,016,250 - CA264_08685 0.50 +0.1 2,016,294 - CA264_08685 0.54 -0.4 2,016,468 - CA264_08685 0.70 -0.1
Or see this region's nucleotide sequence