Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03460 and CA264_03465 are separated by 82 nucleotides CA264_03465 and CA264_03470 are separated by 303 nucleotides CA264_03470 and CA264_03475 are separated by 349 nucleotides
CA264_03460: CA264_03460 - hypothetical protein, at 808,079 to 808,501
_03460
CA264_03465: CA264_03465 - hypothetical protein, at 808,584 to 809,066
_03465
CA264_03470: CA264_03470 - short-chain dehydrogenase, at 809,370 to 810,140
_03470
CA264_03475: CA264_03475 - oxidoreductase, at 810,490 to 811,362
_03475
Position (kb) 809
810
811 Strain fitness (log2 ratio) -1
0
1
2 at 808.380 kb on + strand, within CA264_03460 at 808.380 kb on + strand, within CA264_03460 at 808.389 kb on - strand, within CA264_03460 at 808.439 kb on + strand, within CA264_03460 at 808.515 kb on - strand at 808.515 kb on - strand at 808.523 kb on + strand at 808.524 kb on - strand at 808.524 kb on - strand at 808.551 kb on + strand at 808.551 kb on + strand at 808.644 kb on + strand, within CA264_03465 at 808.645 kb on - strand, within CA264_03465 at 808.659 kb on - strand, within CA264_03465 at 808.706 kb on - strand, within CA264_03465 at 808.762 kb on - strand, within CA264_03465 at 808.817 kb on + strand, within CA264_03465 at 808.818 kb on - strand, within CA264_03465 at 808.821 kb on + strand, within CA264_03465 at 808.855 kb on + strand, within CA264_03465 at 808.956 kb on - strand, within CA264_03465 at 808.985 kb on + strand, within CA264_03465 at 809.068 kb on + strand at 809.068 kb on + strand at 809.069 kb on - strand at 809.072 kb on + strand at 809.072 kb on + strand at 809.190 kb on + strand at 809.215 kb on + strand at 809.305 kb on + strand at 809.316 kb on + strand at 809.316 kb on + strand at 809.338 kb on + strand at 809.383 kb on + strand at 809.401 kb on + strand at 809.589 kb on + strand, within CA264_03470 at 809.605 kb on + strand, within CA264_03470 at 809.683 kb on - strand, within CA264_03470 at 809.709 kb on + strand, within CA264_03470 at 809.710 kb on - strand, within CA264_03470 at 809.765 kb on - strand, within CA264_03470 at 809.904 kb on + strand, within CA264_03470 at 810.126 kb on + strand at 810.161 kb on + strand at 810.164 kb on + strand at 810.165 kb on - strand at 810.165 kb on - strand at 810.169 kb on + strand at 810.169 kb on + strand at 810.170 kb on - strand at 810.170 kb on - strand at 810.276 kb on - strand at 810.297 kb on + strand at 810.298 kb on - strand at 810.298 kb on - strand at 810.316 kb on - strand at 810.316 kb on - strand at 810.423 kb on + strand at 810.423 kb on + strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.424 kb on - strand at 810.427 kb on + strand at 810.434 kb on + strand at 810.435 kb on - strand at 810.446 kb on - strand at 810.489 kb on + strand at 810.490 kb on - strand at 810.526 kb on + strand at 810.526 kb on + strand at 810.527 kb on - strand at 810.533 kb on + strand at 810.597 kb on - strand, within CA264_03475 at 810.635 kb on + strand, within CA264_03475 at 810.670 kb on - strand, within CA264_03475 at 811.019 kb on - strand, within CA264_03475 at 811.019 kb on - strand, within CA264_03475 at 811.048 kb on + strand, within CA264_03475 at 811.055 kb on + strand, within CA264_03475 at 811.055 kb on + strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.056 kb on - strand, within CA264_03475 at 811.114 kb on - strand, within CA264_03475
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 808,380 + CA264_03460 0.71 +0.1 808,380 + CA264_03460 0.71 -1.6 808,389 - CA264_03460 0.73 -1.6 808,439 + CA264_03460 0.85 -1.5 808,515 - +0.1 808,515 - -1.7 808,523 + -0.3 808,524 - +0.4 808,524 - -0.4 808,551 + +0.1 808,551 + -0.8 808,644 + CA264_03465 0.12 -0.6 808,645 - CA264_03465 0.13 +0.5 808,659 - CA264_03465 0.16 -0.4 808,706 - CA264_03465 0.25 +0.0 808,762 - CA264_03465 0.37 +0.5 808,817 + CA264_03465 0.48 -0.4 808,818 - CA264_03465 0.48 -0.2 808,821 + CA264_03465 0.49 +0.0 808,855 + CA264_03465 0.56 -0.1 808,956 - CA264_03465 0.77 +1.2 808,985 + CA264_03465 0.83 -0.3 809,068 + +0.3 809,068 + -0.3 809,069 - -0.2 809,072 + +0.9 809,072 + -0.2 809,190 + -1.0 809,215 + -0.1 809,305 + -0.6 809,316 + -0.8 809,316 + -1.0 809,338 + -0.5 809,383 + -1.0 809,401 + +1.1 809,589 + CA264_03470 0.28 -0.1 809,605 + CA264_03470 0.30 +0.0 809,683 - CA264_03470 0.41 +0.2 809,709 + CA264_03470 0.44 -1.4 809,710 - CA264_03470 0.44 +0.6 809,765 - CA264_03470 0.51 -0.8 809,904 + CA264_03470 0.69 -0.3 810,126 + +0.4 810,161 + -0.9 810,164 + -0.6 810,165 - -1.2 810,165 - +0.5 810,169 + +0.2 810,169 + -0.0 810,170 - -0.7 810,170 - +0.1 810,276 - -0.8 810,297 + +0.0 810,298 - -0.5 810,298 - +0.1 810,316 - +0.4 810,316 - +0.3 810,423 + -0.3 810,423 + +0.1 810,424 - -0.8 810,424 - -0.3 810,424 - -0.1 810,424 - -0.6 810,424 - -0.2 810,427 + +0.0 810,434 + -0.1 810,435 - +1.0 810,446 - -0.1 810,489 + +0.5 810,490 - +0.1 810,526 + +0.8 810,526 + -0.4 810,527 - +0.0 810,533 + +0.8 810,597 - CA264_03475 0.12 +0.1 810,635 + CA264_03475 0.17 -0.7 810,670 - CA264_03475 0.21 +1.8 811,019 - CA264_03475 0.61 -0.7 811,019 - CA264_03475 0.61 +0.8 811,048 + CA264_03475 0.64 +0.1 811,055 + CA264_03475 0.65 -1.1 811,055 + CA264_03475 0.65 +0.2 811,056 - CA264_03475 0.65 -1.3 811,056 - CA264_03475 0.65 -0.9 811,056 - CA264_03475 0.65 -0.8 811,114 - CA264_03475 0.71 -0.8
Or see this region's nucleotide sequence