Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03370 and CA264_03375 are separated by 149 nucleotides CA264_03375 and CA264_03380 are separated by 137 nucleotides CA264_03380 and CA264_03385 are separated by 215 nucleotides CA264_03385 and CA264_03390 are separated by 247 nucleotides
CA264_03370: CA264_03370 - hypothetical protein, at 789,240 to 789,671
_03370
CA264_03375: CA264_03375 - hypothetical protein, at 789,821 to 790,390
_03375
CA264_03380: CA264_03380 - hypothetical protein, at 790,528 to 791,238
_03380
CA264_03385: CA264_03385 - hypothetical protein, at 791,454 to 791,675
_03385
CA264_03390: CA264_03390 - hypothetical protein, at 791,923 to 792,291
_03390
Position (kb) 790
791
792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.583 kb on + strand, within CA264_03370 at 789.583 kb on + strand, within CA264_03370 at 789.588 kb on + strand, within CA264_03370 at 789.589 kb on - strand, within CA264_03370 at 789.589 kb on - strand, within CA264_03370 at 789.671 kb on + strand at 789.684 kb on + strand at 789.685 kb on - strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.719 kb on - strand at 789.753 kb on - strand at 789.769 kb on + strand at 789.770 kb on - strand at 789.809 kb on + strand at 789.809 kb on + strand at 789.809 kb on + strand at 789.810 kb on - strand at 789.811 kb on + strand at 789.892 kb on + strand, within CA264_03375 at 789.893 kb on - strand, within CA264_03375 at 789.907 kb on - strand, within CA264_03375 at 789.907 kb on - strand, within CA264_03375 at 789.912 kb on - strand, within CA264_03375 at 789.913 kb on + strand, within CA264_03375 at 789.972 kb on + strand, within CA264_03375 at 789.973 kb on - strand, within CA264_03375 at 789.973 kb on - strand, within CA264_03375 at 789.996 kb on + strand, within CA264_03375 at 789.997 kb on - strand, within CA264_03375 at 790.213 kb on + strand, within CA264_03375 at 790.214 kb on - strand, within CA264_03375 at 790.240 kb on + strand, within CA264_03375 at 790.271 kb on - strand, within CA264_03375 at 790.271 kb on - strand, within CA264_03375 at 790.300 kb on - strand, within CA264_03375 at 790.362 kb on + strand at 790.490 kb on - strand at 790.513 kb on + strand at 790.514 kb on - strand at 790.517 kb on + strand at 790.518 kb on - strand at 790.527 kb on + strand at 790.527 kb on + strand at 790.630 kb on + strand, within CA264_03380 at 790.630 kb on + strand, within CA264_03380 at 790.648 kb on + strand, within CA264_03380 at 790.810 kb on + strand, within CA264_03380 at 790.811 kb on - strand, within CA264_03380 at 790.966 kb on + strand, within CA264_03380 at 790.966 kb on + strand, within CA264_03380 at 790.967 kb on - strand, within CA264_03380 at 791.002 kb on + strand, within CA264_03380 at 791.005 kb on + strand, within CA264_03380 at 791.006 kb on - strand, within CA264_03380 at 791.083 kb on + strand, within CA264_03380 at 791.084 kb on - strand, within CA264_03380 at 791.162 kb on - strand, within CA264_03380 at 791.303 kb on + strand at 791.310 kb on + strand at 791.311 kb on - strand at 791.378 kb on - strand at 791.413 kb on + strand at 791.439 kb on + strand at 791.439 kb on + strand at 791.444 kb on + strand at 791.613 kb on + strand, within CA264_03385 at 791.614 kb on - strand, within CA264_03385 at 791.618 kb on + strand, within CA264_03385 at 791.619 kb on - strand, within CA264_03385 at 791.675 kb on + strand at 791.691 kb on + strand at 791.714 kb on + strand at 791.714 kb on + strand at 791.715 kb on - strand at 791.813 kb on + strand at 791.858 kb on + strand at 791.859 kb on - strand at 791.869 kb on + strand at 791.875 kb on + strand at 791.876 kb on - strand at 791.922 kb on + strand at 791.965 kb on - strand, within CA264_03390 at 792.031 kb on - strand, within CA264_03390 at 792.203 kb on - strand, within CA264_03390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 789,583 + CA264_03370 0.79 -0.1 789,583 + CA264_03370 0.79 -0.6 789,588 + CA264_03370 0.81 +0.2 789,589 - CA264_03370 0.81 +0.1 789,589 - CA264_03370 0.81 -0.8 789,671 + -2.0 789,684 + -0.6 789,685 - -0.3 789,688 + +0.6 789,688 + -0.6 789,688 + +0.2 789,688 + +0.2 789,688 + +0.7 789,688 + -1.3 789,689 - -0.2 789,689 - +0.4 789,689 - -1.6 789,689 - -0.4 789,689 - -1.4 789,689 - -0.1 789,689 - +0.2 789,719 - +2.0 789,753 - -0.2 789,769 + -0.2 789,770 - +0.1 789,809 + +0.5 789,809 + -0.2 789,809 + +1.7 789,810 - -0.1 789,811 + +0.0 789,892 + CA264_03375 0.12 -0.4 789,893 - CA264_03375 0.13 -0.7 789,907 - CA264_03375 0.15 -1.3 789,907 - CA264_03375 0.15 +0.2 789,912 - CA264_03375 0.16 +0.3 789,913 + CA264_03375 0.16 -0.0 789,972 + CA264_03375 0.26 -1.0 789,973 - CA264_03375 0.27 -0.3 789,973 - CA264_03375 0.27 -0.5 789,996 + CA264_03375 0.31 -0.2 789,997 - CA264_03375 0.31 -0.4 790,213 + CA264_03375 0.69 -0.4 790,214 - CA264_03375 0.69 -0.6 790,240 + CA264_03375 0.74 -0.1 790,271 - CA264_03375 0.79 +2.5 790,271 - CA264_03375 0.79 -1.6 790,300 - CA264_03375 0.84 +0.3 790,362 + -0.6 790,490 - +0.3 790,513 + +0.0 790,514 - +0.3 790,517 + -0.2 790,518 - -1.0 790,527 + -0.0 790,527 + +0.1 790,630 + CA264_03380 0.14 -0.1 790,630 + CA264_03380 0.14 -0.5 790,648 + CA264_03380 0.17 +1.0 790,810 + CA264_03380 0.40 +0.7 790,811 - CA264_03380 0.40 +0.2 790,966 + CA264_03380 0.62 +1.4 790,966 + CA264_03380 0.62 -0.2 790,967 - CA264_03380 0.62 -0.4 791,002 + CA264_03380 0.67 -0.3 791,005 + CA264_03380 0.67 -1.6 791,006 - CA264_03380 0.67 -0.5 791,083 + CA264_03380 0.78 -0.0 791,084 - CA264_03380 0.78 +1.5 791,162 - CA264_03380 0.89 +0.3 791,303 + -0.2 791,310 + -0.3 791,311 - +0.9 791,378 - -0.6 791,413 + +0.6 791,439 + +0.8 791,439 + +0.0 791,444 + +0.9 791,613 + CA264_03385 0.72 +0.4 791,614 - CA264_03385 0.72 -0.3 791,618 + CA264_03385 0.74 +0.9 791,619 - CA264_03385 0.74 +0.1 791,675 + -0.2 791,691 + -1.3 791,714 + +0.1 791,714 + +0.3 791,715 - +0.5 791,813 + -1.0 791,858 + -1.4 791,859 - +0.2 791,869 + -0.2 791,875 + +0.1 791,876 - -0.7 791,922 + -0.3 791,965 - CA264_03390 0.11 -0.5 792,031 - CA264_03390 0.29 -0.7 792,203 - CA264_03390 0.76 -0.1
Or see this region's nucleotide sequence