Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02925 and CA264_02930 are separated by 358 nucleotides CA264_02930 and CA264_02935 are separated by 40 nucleotides CA264_02935 and CA264_02940 are separated by 53 nucleotides CA264_02940 and CA264_02945 are separated by 132 nucleotides
CA264_02925: CA264_02925 - hypothetical protein, at 664,509 to 667,886
_02925
CA264_02930: CA264_02930 - copper-translocating P-type ATPase, at 668,245 to 670,479
_02930
CA264_02935: CA264_02935 - hypothetical protein, at 670,520 to 670,729
_02935
CA264_02940: CA264_02940 - hypothetical protein, at 670,783 to 671,175
_02940
CA264_02945: CA264_02945 - hypothetical protein, at 671,308 to 672,327
_02945
Position (kb) 668
669
670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 667.280 kb on - strand, within CA264_02925 at 667.414 kb on + strand, within CA264_02925 at 667.414 kb on + strand, within CA264_02925 at 667.449 kb on + strand, within CA264_02925 at 667.475 kb on + strand, within CA264_02925 at 667.476 kb on - strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.557 kb on + strand at 667.558 kb on - strand at 667.633 kb on + strand at 667.634 kb on - strand at 667.634 kb on - strand at 667.670 kb on + strand at 667.670 kb on + strand at 667.671 kb on - strand at 667.725 kb on + strand at 667.727 kb on + strand at 667.727 kb on + strand at 667.727 kb on + strand at 667.728 kb on - strand at 667.728 kb on - strand at 667.732 kb on + strand at 667.732 kb on + strand at 667.733 kb on - strand at 667.757 kb on + strand at 667.757 kb on + strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.763 kb on - strand at 667.812 kb on + strand at 667.819 kb on - strand at 667.820 kb on + strand at 667.821 kb on - strand at 667.896 kb on - strand at 667.896 kb on - strand at 667.899 kb on + strand at 667.899 kb on + strand at 667.900 kb on - strand at 667.935 kb on + strand at 667.982 kb on - strand at 668.030 kb on - strand at 668.030 kb on - strand at 668.073 kb on - strand at 668.073 kb on - strand at 668.153 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.169 kb on - strand at 668.175 kb on - strand at 668.189 kb on + strand at 668.230 kb on + strand at 668.254 kb on - strand at 668.255 kb on + strand at 668.255 kb on + strand at 668.256 kb on - strand at 668.262 kb on + strand at 668.262 kb on + strand at 668.262 kb on + strand at 668.373 kb on - strand at 668.456 kb on + strand at 668.456 kb on + strand at 668.601 kb on + strand, within CA264_02930 at 668.607 kb on + strand, within CA264_02930 at 668.633 kb on + strand, within CA264_02930 at 668.634 kb on - strand, within CA264_02930 at 668.677 kb on - strand, within CA264_02930 at 668.721 kb on + strand, within CA264_02930 at 668.769 kb on + strand, within CA264_02930 at 668.825 kb on - strand, within CA264_02930 at 668.853 kb on + strand, within CA264_02930 at 668.855 kb on + strand, within CA264_02930 at 668.855 kb on + strand, within CA264_02930 at 668.856 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.895 kb on + strand, within CA264_02930 at 668.895 kb on + strand, within CA264_02930 at 668.895 kb on + strand, within CA264_02930 at 668.934 kb on + strand, within CA264_02930 at 668.976 kb on - strand, within CA264_02930 at 668.991 kb on - strand, within CA264_02930 at 669.127 kb on - strand, within CA264_02930 at 669.133 kb on + strand, within CA264_02930 at 669.213 kb on + strand, within CA264_02930 at 669.214 kb on - strand, within CA264_02930 at 669.216 kb on + strand, within CA264_02930 at 669.216 kb on + strand, within CA264_02930 at 669.217 kb on - strand, within CA264_02930 at 669.319 kb on - strand, within CA264_02930 at 669.356 kb on - strand, within CA264_02930 at 669.374 kb on + strand, within CA264_02930 at 669.378 kb on + strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.381 kb on + strand, within CA264_02930 at 669.440 kb on + strand, within CA264_02930 at 669.441 kb on - strand, within CA264_02930 at 669.441 kb on - strand, within CA264_02930 at 669.446 kb on + strand, within CA264_02930 at 669.446 kb on + strand, within CA264_02930 at 669.519 kb on - strand, within CA264_02930 at 669.530 kb on + strand, within CA264_02930 at 669.531 kb on - strand, within CA264_02930 at 669.676 kb on + strand, within CA264_02930 at 669.676 kb on + strand, within CA264_02930 at 669.685 kb on + strand, within CA264_02930 at 669.726 kb on + strand, within CA264_02930 at 669.727 kb on - strand, within CA264_02930 at 669.776 kb on - strand, within CA264_02930 at 669.776 kb on - strand, within CA264_02930 at 669.931 kb on - strand, within CA264_02930 at 669.986 kb on + strand, within CA264_02930 at 669.988 kb on + strand, within CA264_02930 at 669.988 kb on + strand, within CA264_02930 at 669.988 kb on + strand, within CA264_02930 at 669.989 kb on - strand, within CA264_02930 at 670.040 kb on + strand, within CA264_02930 at 670.121 kb on + strand, within CA264_02930 at 670.178 kb on + strand, within CA264_02930 at 670.178 kb on + strand, within CA264_02930 at 670.179 kb on - strand, within CA264_02930 at 670.179 kb on - strand, within CA264_02930 at 670.182 kb on + strand, within CA264_02930 at 670.182 kb on + strand, within CA264_02930 at 670.182 kb on + strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.185 kb on - strand, within CA264_02930 at 670.264 kb on - strand at 670.653 kb on + strand, within CA264_02935 at 670.727 kb on + strand at 670.739 kb on + strand at 670.739 kb on + strand at 670.740 kb on - strand at 670.740 kb on - strand at 670.741 kb on + strand at 670.741 kb on + strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.745 kb on + strand at 670.745 kb on + strand at 670.745 kb on + strand at 670.746 kb on - strand at 670.754 kb on - strand at 670.779 kb on - strand at 670.822 kb on + strand at 670.880 kb on + strand, within CA264_02940 at 670.880 kb on + strand, within CA264_02940 at 670.915 kb on + strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.991 kb on + strand, within CA264_02940 at 670.991 kb on + strand, within CA264_02940 at 671.053 kb on + strand, within CA264_02940 at 671.054 kb on - strand, within CA264_02940 at 671.073 kb on - strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.109 kb on - strand, within CA264_02940 at 671.143 kb on + strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.175 kb on + strand at 671.175 kb on + strand at 671.175 kb on + strand at 671.176 kb on - strand at 671.176 kb on - strand at 671.177 kb on + strand at 671.178 kb on - strand at 671.178 kb on - strand at 671.178 kb on - strand at 671.188 kb on + strand at 671.188 kb on + strand at 671.188 kb on + strand at 671.191 kb on - strand at 671.267 kb on - strand at 671.267 kb on - strand at 671.300 kb on + strand at 671.301 kb on - strand at 671.301 kb on - strand at 671.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 667,280 - CA264_02925 0.82 -0.8 667,414 + CA264_02925 0.86 +0.3 667,414 + CA264_02925 0.86 -0.0 667,449 + CA264_02925 0.87 -0.2 667,475 + CA264_02925 0.88 -1.0 667,476 - CA264_02925 0.88 -0.4 667,477 + CA264_02925 0.88 -0.7 667,477 + CA264_02925 0.88 -0.9 667,477 + CA264_02925 0.88 -0.2 667,477 + CA264_02925 0.88 -0.8 667,477 + CA264_02925 0.88 -0.4 667,478 - CA264_02925 0.88 -0.1 667,478 - CA264_02925 0.88 -0.1 667,478 - CA264_02925 0.88 -0.8 667,481 - CA264_02925 0.88 +0.6 667,481 - CA264_02925 0.88 -0.7 667,481 - CA264_02925 0.88 +0.1 667,481 - CA264_02925 0.88 +0.9 667,557 + +0.2 667,558 - -1.0 667,633 + -0.8 667,634 - -0.3 667,634 - -0.4 667,670 + -0.9 667,670 + -0.3 667,671 - -0.6 667,725 + +0.5 667,727 + +0.9 667,727 + -0.3 667,727 + +0.1 667,728 - -1.4 667,728 - -1.1 667,732 + -0.2 667,732 + +2.2 667,733 - -2.0 667,757 + -0.6 667,757 + -0.2 667,758 - -0.4 667,758 - -0.2 667,758 - -0.1 667,758 - +0.0 667,763 - -0.4 667,812 + -0.3 667,819 - -0.5 667,820 + -0.5 667,821 - -0.0 667,896 - -0.0 667,896 - -0.8 667,899 + -0.2 667,899 + -0.1 667,900 - -0.0 667,935 + +0.1 667,982 - +2.2 668,030 - -0.2 668,030 - -0.7 668,073 - -0.2 668,073 - +0.2 668,153 + -1.1 668,160 + -0.1 668,160 + -1.2 668,160 + -0.3 668,160 + -0.1 668,160 + +1.2 668,164 + -0.3 668,164 + -0.5 668,164 + -0.9 668,164 + +0.2 668,169 - -1.1 668,175 - -0.3 668,189 + +0.1 668,230 + -0.9 668,254 - +0.9 668,255 + -1.0 668,255 + +0.4 668,256 - -0.2 668,262 + -0.5 668,262 + +0.1 668,262 + -0.5 668,373 - -0.7 668,456 + -0.1 668,456 + -0.6 668,601 + CA264_02930 0.16 -1.0 668,607 + CA264_02930 0.16 -0.1 668,633 + CA264_02930 0.17 -0.1 668,634 - CA264_02930 0.17 +0.3 668,677 - CA264_02930 0.19 -0.5 668,721 + CA264_02930 0.21 +1.2 668,769 + CA264_02930 0.23 -0.1 668,825 - CA264_02930 0.26 +0.4 668,853 + CA264_02930 0.27 -1.2 668,855 + CA264_02930 0.27 +0.9 668,855 + CA264_02930 0.27 -0.6 668,856 - CA264_02930 0.27 +0.1 668,866 - CA264_02930 0.28 -0.2 668,866 - CA264_02930 0.28 +0.1 668,866 - CA264_02930 0.28 -0.1 668,895 + CA264_02930 0.29 +0.4 668,895 + CA264_02930 0.29 +0.2 668,895 + CA264_02930 0.29 -0.7 668,934 + CA264_02930 0.31 -0.0 668,976 - CA264_02930 0.33 +0.4 668,991 - CA264_02930 0.33 +0.4 669,127 - CA264_02930 0.39 +0.2 669,133 + CA264_02930 0.40 +0.1 669,213 + CA264_02930 0.43 +0.1 669,214 - CA264_02930 0.43 -0.4 669,216 + CA264_02930 0.43 +0.5 669,216 + CA264_02930 0.43 -0.0 669,217 - CA264_02930 0.43 +0.2 669,319 - CA264_02930 0.48 +0.2 669,356 - CA264_02930 0.50 +0.3 669,374 + CA264_02930 0.51 +1.2 669,378 + CA264_02930 0.51 -0.3 669,379 - CA264_02930 0.51 +1.6 669,379 - CA264_02930 0.51 +0.1 669,379 - CA264_02930 0.51 +0.0 669,379 - CA264_02930 0.51 +0.0 669,379 - CA264_02930 0.51 +0.9 669,381 + CA264_02930 0.51 +0.1 669,440 + CA264_02930 0.53 +1.7 669,441 - CA264_02930 0.54 -0.1 669,441 - CA264_02930 0.54 -0.4 669,446 + CA264_02930 0.54 -0.1 669,446 + CA264_02930 0.54 -0.6 669,519 - CA264_02930 0.57 -0.4 669,530 + CA264_02930 0.57 -0.1 669,531 - CA264_02930 0.58 +0.9 669,676 + CA264_02930 0.64 +0.0 669,676 + CA264_02930 0.64 -0.7 669,685 + CA264_02930 0.64 -0.2 669,726 + CA264_02930 0.66 +0.5 669,727 - CA264_02930 0.66 -0.1 669,776 - CA264_02930 0.69 -0.2 669,776 - CA264_02930 0.69 -0.6 669,931 - CA264_02930 0.75 -0.5 669,986 + CA264_02930 0.78 -0.8 669,988 + CA264_02930 0.78 -0.6 669,988 + CA264_02930 0.78 +0.2 669,988 + CA264_02930 0.78 -0.1 669,989 - CA264_02930 0.78 -0.6 670,040 + CA264_02930 0.80 -0.1 670,121 + CA264_02930 0.84 +0.1 670,178 + CA264_02930 0.86 +0.5 670,178 + CA264_02930 0.86 -0.4 670,179 - CA264_02930 0.87 -0.4 670,179 - CA264_02930 0.87 -1.4 670,182 + CA264_02930 0.87 +0.0 670,182 + CA264_02930 0.87 +0.5 670,182 + CA264_02930 0.87 -2.4 670,183 - CA264_02930 0.87 -2.3 670,183 - CA264_02930 0.87 -0.4 670,183 - CA264_02930 0.87 +0.6 670,183 - CA264_02930 0.87 -1.4 670,183 - CA264_02930 0.87 +0.1 670,183 - CA264_02930 0.87 +0.1 670,185 - CA264_02930 0.87 +0.8 670,264 - -0.3 670,653 + CA264_02935 0.63 +0.8 670,727 + -0.6 670,739 + -1.2 670,739 + +0.4 670,740 - -0.1 670,740 - +0.2 670,741 + -1.1 670,741 + +0.1 670,742 - -0.0 670,742 - -0.1 670,742 - -0.2 670,742 - -0.3 670,745 + -0.2 670,745 + -0.4 670,745 + -0.6 670,746 - -0.1 670,754 - -0.1 670,779 - -0.5 670,822 + -1.2 670,880 + CA264_02940 0.25 -0.1 670,880 + CA264_02940 0.25 -0.2 670,915 + CA264_02940 0.34 -2.0 670,916 - CA264_02940 0.34 -0.3 670,916 - CA264_02940 0.34 +1.4 670,916 - CA264_02940 0.34 +0.5 670,973 + CA264_02940 0.48 +0.3 670,973 + CA264_02940 0.48 +0.1 670,973 + CA264_02940 0.48 +2.5 670,973 + CA264_02940 0.48 -0.6 670,973 + CA264_02940 0.48 -0.2 670,973 + CA264_02940 0.48 -0.2 670,974 - CA264_02940 0.49 -0.8 670,974 - CA264_02940 0.49 -0.0 670,974 - CA264_02940 0.49 +0.6 670,974 - CA264_02940 0.49 -0.1 670,974 - CA264_02940 0.49 -0.3 670,974 - CA264_02940 0.49 +0.1 670,974 - CA264_02940 0.49 -0.6 670,991 + CA264_02940 0.53 -0.0 670,991 + CA264_02940 0.53 -1.2 671,053 + CA264_02940 0.69 +1.2 671,054 - CA264_02940 0.69 -1.4 671,073 - CA264_02940 0.74 -0.7 671,108 + CA264_02940 0.83 -0.0 671,108 + CA264_02940 0.83 +1.0 671,108 + CA264_02940 0.83 -0.5 671,109 - CA264_02940 0.83 +0.7 671,143 + +0.8 671,144 - +1.0 671,144 - -0.8 671,144 - -2.2 671,175 + -0.1 671,175 + +0.0 671,175 + +0.9 671,176 - -0.1 671,176 - +0.0 671,177 + +0.2 671,178 - -0.2 671,178 - -0.3 671,178 - -0.1 671,188 + -0.2 671,188 + +0.4 671,188 + -0.0 671,191 - -1.2 671,267 - +0.2 671,267 - -0.3 671,300 + +0.4 671,301 - -1.1 671,301 - +0.9 671,331 + +0.6
Or see this region's nucleotide sequence