Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02095 and CA264_02100 are separated by 120 nucleotides CA264_02100 and CA264_02105 are separated by 119 nucleotides CA264_02105 and CA264_02110 are separated by 257 nucleotides
CA264_02095: CA264_02095 - AI-2E family transporter, at 483,248 to 484,306
_02095
CA264_02100: CA264_02100 - Clp protease ClpC, at 484,427 to 487,024
_02100
CA264_02105: CA264_02105 - hypothetical protein, at 487,144 to 487,746
_02105
CA264_02110: CA264_02110 - lauroyl acyltransferase, at 488,004 to 488,924
_02110
Position (kb) 484
485
486
487
488 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.567 kb on - strand, within CA264_02095 at 483.607 kb on - strand, within CA264_02095 at 483.675 kb on - strand, within CA264_02095 at 483.676 kb on + strand, within CA264_02095 at 483.677 kb on - strand, within CA264_02095 at 483.755 kb on - strand, within CA264_02095 at 483.755 kb on - strand, within CA264_02095 at 483.767 kb on + strand, within CA264_02095 at 483.768 kb on - strand, within CA264_02095 at 483.768 kb on - strand, within CA264_02095 at 483.811 kb on - strand, within CA264_02095 at 483.833 kb on + strand, within CA264_02095 at 483.834 kb on - strand, within CA264_02095 at 483.837 kb on - strand, within CA264_02095 at 483.844 kb on + strand, within CA264_02095 at 483.845 kb on - strand, within CA264_02095 at 483.846 kb on + strand, within CA264_02095 at 483.950 kb on - strand, within CA264_02095 at 483.951 kb on + strand, within CA264_02095 at 483.952 kb on - strand, within CA264_02095 at 483.952 kb on - strand, within CA264_02095 at 484.022 kb on + strand, within CA264_02095 at 484.023 kb on - strand, within CA264_02095 at 484.054 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.305 kb on - strand at 484.319 kb on - strand at 484.414 kb on + strand at 484.415 kb on - strand at 484.421 kb on + strand at 484.422 kb on - strand at 487.027 kb on - strand at 487.027 kb on - strand at 487.028 kb on + strand at 487.029 kb on - strand at 487.031 kb on + strand at 487.031 kb on + strand at 487.031 kb on + strand at 487.032 kb on - strand at 487.033 kb on + strand at 487.034 kb on - strand at 487.042 kb on + strand at 487.110 kb on + strand at 487.179 kb on + strand at 487.228 kb on + strand, within CA264_02105 at 487.236 kb on + strand, within CA264_02105 at 487.236 kb on + strand, within CA264_02105 at 487.279 kb on + strand, within CA264_02105 at 487.279 kb on + strand, within CA264_02105 at 487.280 kb on - strand, within CA264_02105 at 487.369 kb on - strand, within CA264_02105 at 487.374 kb on - strand, within CA264_02105 at 487.374 kb on - strand, within CA264_02105 at 487.427 kb on + strand, within CA264_02105 at 487.442 kb on + strand, within CA264_02105 at 487.443 kb on - strand, within CA264_02105 at 487.463 kb on + strand, within CA264_02105 at 487.526 kb on + strand, within CA264_02105 at 487.526 kb on + strand, within CA264_02105 at 487.566 kb on + strand, within CA264_02105 at 487.600 kb on + strand, within CA264_02105 at 487.652 kb on + strand, within CA264_02105 at 487.724 kb on + strand at 487.724 kb on + strand at 487.781 kb on + strand at 487.781 kb on + strand at 487.784 kb on + strand at 487.864 kb on - strand at 487.868 kb on - strand at 487.922 kb on + strand at 487.947 kb on + strand at 487.978 kb on + strand at 487.978 kb on + strand at 487.979 kb on - strand at 488.023 kb on + strand at 488.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 483,567 - CA264_02095 0.30 -1.7 483,607 - CA264_02095 0.34 -1.1 483,675 - CA264_02095 0.40 +0.6 483,676 + CA264_02095 0.40 -0.9 483,677 - CA264_02095 0.41 -0.8 483,755 - CA264_02095 0.48 -0.2 483,755 - CA264_02095 0.48 +0.3 483,767 + CA264_02095 0.49 -0.4 483,768 - CA264_02095 0.49 -1.1 483,768 - CA264_02095 0.49 +1.5 483,811 - CA264_02095 0.53 -0.3 483,833 + CA264_02095 0.55 -0.2 483,834 - CA264_02095 0.55 +2.6 483,837 - CA264_02095 0.56 -0.2 483,844 + CA264_02095 0.56 +0.1 483,845 - CA264_02095 0.56 -1.7 483,846 + CA264_02095 0.56 -0.0 483,950 - CA264_02095 0.66 -0.3 483,951 + CA264_02095 0.66 +0.3 483,952 - CA264_02095 0.66 -0.0 483,952 - CA264_02095 0.66 -0.5 484,022 + CA264_02095 0.73 +1.5 484,023 - CA264_02095 0.73 +0.0 484,054 + CA264_02095 0.76 -0.3 484,132 + CA264_02095 0.83 -0.2 484,132 + CA264_02095 0.83 -0.9 484,132 + CA264_02095 0.83 -0.6 484,132 + CA264_02095 0.83 +0.9 484,132 + CA264_02095 0.83 +1.0 484,305 - -0.1 484,319 - -0.7 484,414 + -0.5 484,415 - +0.4 484,421 + -2.1 484,422 - -0.5 487,027 - -0.3 487,027 - +0.3 487,028 + +0.1 487,029 - +0.4 487,031 + -0.0 487,031 + -0.6 487,031 + -0.3 487,032 - -1.0 487,033 + +1.1 487,034 - +0.3 487,042 + +0.2 487,110 + -0.4 487,179 + -0.3 487,228 + CA264_02105 0.14 -0.1 487,236 + CA264_02105 0.15 -0.6 487,236 + CA264_02105 0.15 +0.7 487,279 + CA264_02105 0.22 -0.0 487,279 + CA264_02105 0.22 -0.3 487,280 - CA264_02105 0.23 -0.6 487,369 - CA264_02105 0.37 -1.0 487,374 - CA264_02105 0.38 -0.9 487,374 - CA264_02105 0.38 -1.0 487,427 + CA264_02105 0.47 +0.7 487,442 + CA264_02105 0.49 -0.8 487,443 - CA264_02105 0.50 -0.5 487,463 + CA264_02105 0.53 -0.4 487,526 + CA264_02105 0.63 +0.9 487,526 + CA264_02105 0.63 -0.4 487,566 + CA264_02105 0.70 -1.7 487,600 + CA264_02105 0.76 +0.2 487,652 + CA264_02105 0.84 +0.4 487,724 + -0.7 487,724 + -0.4 487,781 + +2.2 487,781 + -0.2 487,784 + +0.9 487,864 - -0.2 487,868 - +0.4 487,922 + -0.2 487,947 + +0.4 487,978 + -0.3 487,978 + +0.1 487,979 - -1.1 488,023 + -0.7 488,024 - -0.2
Or see this region's nucleotide sequence