Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02090 and CA264_02095 are separated by 100 nucleotides CA264_02095 and CA264_02100 are separated by 120 nucleotides
CA264_02090: CA264_02090 - peptidase M28, at 481,849 to 483,147
_02090
CA264_02095: CA264_02095 - AI-2E family transporter, at 483,248 to 484,306
_02095
CA264_02100: CA264_02100 - Clp protease ClpC, at 484,427 to 487,024
_02100
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.257 kb on + strand, within CA264_02090 at 482.258 kb on - strand, within CA264_02090 at 482.273 kb on + strand, within CA264_02090 at 482.273 kb on + strand, within CA264_02090 at 482.274 kb on - strand, within CA264_02090 at 482.355 kb on - strand, within CA264_02090 at 482.355 kb on - strand, within CA264_02090 at 482.375 kb on - strand, within CA264_02090 at 482.375 kb on - strand, within CA264_02090 at 482.459 kb on + strand, within CA264_02090 at 482.524 kb on + strand, within CA264_02090 at 482.539 kb on + strand, within CA264_02090 at 482.540 kb on - strand, within CA264_02090 at 482.540 kb on - strand, within CA264_02090 at 482.540 kb on - strand, within CA264_02090 at 482.562 kb on + strand, within CA264_02090 at 482.563 kb on - strand, within CA264_02090 at 482.564 kb on + strand, within CA264_02090 at 482.565 kb on - strand, within CA264_02090 at 482.565 kb on - strand, within CA264_02090 at 482.565 kb on - strand, within CA264_02090 at 482.595 kb on + strand, within CA264_02090 at 482.600 kb on - strand, within CA264_02090 at 482.600 kb on - strand, within CA264_02090 at 482.655 kb on - strand, within CA264_02090 at 482.707 kb on + strand, within CA264_02090 at 482.707 kb on + strand, within CA264_02090 at 482.708 kb on - strand, within CA264_02090 at 482.708 kb on - strand, within CA264_02090 at 482.708 kb on - strand, within CA264_02090 at 482.830 kb on + strand, within CA264_02090 at 482.830 kb on + strand, within CA264_02090 at 482.831 kb on - strand, within CA264_02090 at 482.867 kb on - strand, within CA264_02090 at 483.198 kb on - strand at 483.236 kb on + strand at 483.236 kb on + strand at 483.256 kb on + strand at 483.257 kb on - strand at 483.267 kb on + strand at 483.290 kb on + strand at 483.567 kb on - strand, within CA264_02095 at 483.607 kb on - strand, within CA264_02095 at 483.675 kb on - strand, within CA264_02095 at 483.676 kb on + strand, within CA264_02095 at 483.677 kb on - strand, within CA264_02095 at 483.755 kb on - strand, within CA264_02095 at 483.755 kb on - strand, within CA264_02095 at 483.767 kb on + strand, within CA264_02095 at 483.768 kb on - strand, within CA264_02095 at 483.768 kb on - strand, within CA264_02095 at 483.811 kb on - strand, within CA264_02095 at 483.833 kb on + strand, within CA264_02095 at 483.834 kb on - strand, within CA264_02095 at 483.837 kb on - strand, within CA264_02095 at 483.844 kb on + strand, within CA264_02095 at 483.845 kb on - strand, within CA264_02095 at 483.846 kb on + strand, within CA264_02095 at 483.950 kb on - strand, within CA264_02095 at 483.951 kb on + strand, within CA264_02095 at 483.952 kb on - strand, within CA264_02095 at 483.952 kb on - strand, within CA264_02095 at 484.022 kb on + strand, within CA264_02095 at 484.023 kb on - strand, within CA264_02095 at 484.054 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.132 kb on + strand, within CA264_02095 at 484.305 kb on - strand at 484.319 kb on - strand at 484.414 kb on + strand at 484.415 kb on - strand at 484.421 kb on + strand at 484.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 482,257 + CA264_02090 0.31 -0.2 482,258 - CA264_02090 0.31 -1.1 482,273 + CA264_02090 0.33 -0.6 482,273 + CA264_02090 0.33 -0.3 482,274 - CA264_02090 0.33 -0.7 482,355 - CA264_02090 0.39 +0.4 482,355 - CA264_02090 0.39 -0.8 482,375 - CA264_02090 0.40 -1.0 482,375 - CA264_02090 0.40 +1.7 482,459 + CA264_02090 0.47 +0.1 482,524 + CA264_02090 0.52 +0.4 482,539 + CA264_02090 0.53 -0.4 482,540 - CA264_02090 0.53 +1.0 482,540 - CA264_02090 0.53 -1.8 482,540 - CA264_02090 0.53 -0.3 482,562 + CA264_02090 0.55 -0.8 482,563 - CA264_02090 0.55 +0.4 482,564 + CA264_02090 0.55 +0.7 482,565 - CA264_02090 0.55 -0.0 482,565 - CA264_02090 0.55 -0.6 482,565 - CA264_02090 0.55 -0.1 482,595 + CA264_02090 0.57 -1.5 482,600 - CA264_02090 0.58 -1.4 482,600 - CA264_02090 0.58 +0.5 482,655 - CA264_02090 0.62 +0.2 482,707 + CA264_02090 0.66 -1.1 482,707 + CA264_02090 0.66 +0.0 482,708 - CA264_02090 0.66 +0.1 482,708 - CA264_02090 0.66 -0.1 482,708 - CA264_02090 0.66 -0.4 482,830 + CA264_02090 0.76 -0.1 482,830 + CA264_02090 0.76 -0.5 482,831 - CA264_02090 0.76 -0.0 482,867 - CA264_02090 0.78 +0.5 483,198 - -0.8 483,236 + +0.5 483,236 + -0.1 483,256 + -0.3 483,257 - -0.2 483,267 + +0.6 483,290 + +0.4 483,567 - CA264_02095 0.30 -1.7 483,607 - CA264_02095 0.34 -1.1 483,675 - CA264_02095 0.40 +0.6 483,676 + CA264_02095 0.40 -0.9 483,677 - CA264_02095 0.41 -0.8 483,755 - CA264_02095 0.48 -0.2 483,755 - CA264_02095 0.48 +0.3 483,767 + CA264_02095 0.49 -0.4 483,768 - CA264_02095 0.49 -1.1 483,768 - CA264_02095 0.49 +1.5 483,811 - CA264_02095 0.53 -0.3 483,833 + CA264_02095 0.55 -0.2 483,834 - CA264_02095 0.55 +2.6 483,837 - CA264_02095 0.56 -0.2 483,844 + CA264_02095 0.56 +0.1 483,845 - CA264_02095 0.56 -1.7 483,846 + CA264_02095 0.56 -0.0 483,950 - CA264_02095 0.66 -0.3 483,951 + CA264_02095 0.66 +0.3 483,952 - CA264_02095 0.66 -0.0 483,952 - CA264_02095 0.66 -0.5 484,022 + CA264_02095 0.73 +1.5 484,023 - CA264_02095 0.73 +0.0 484,054 + CA264_02095 0.76 -0.3 484,132 + CA264_02095 0.83 -0.2 484,132 + CA264_02095 0.83 -0.9 484,132 + CA264_02095 0.83 -0.6 484,132 + CA264_02095 0.83 +0.9 484,132 + CA264_02095 0.83 +1.0 484,305 - -0.1 484,319 - -0.7 484,414 + -0.5 484,415 - +0.4 484,421 + -2.1 484,422 - -0.5
Or see this region's nucleotide sequence