Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6143 and Atu6144 are separated by 15 nucleotides Atu6144 and Atu6145 overlap by 8 nucleotides Atu6145 and Atu6146 overlap by 1 nucleotides Atu6146 and Atu6147 are separated by 20 nucleotides
Atu6143: Atu6143 - ABC transporter, membrane spanning protein (agrocinopine), at 162,794 to 163,654
Atu6143
Atu6144: Atu6144 - agrocinopine phosphodiesterase, at 163,670 to 164,470
Atu6144
Atu6145: Atu6145 - arabinose phosphate phosphatase, at 164,463 to 165,281
Atu6145
Atu6146: Atu6146 - conserved hypothetical protein, at 165,281 to 165,739
Atu6146
Atu6147: Atu6147 - conserved hypothetical protein, at 165,760 to 166,743
Atu6147
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1
2
3 at 163.469 kb on - strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.508 kb on + strand, within Atu6143 at 163.562 kb on + strand, within Atu6143 at 163.691 kb on - strand at 163.856 kb on + strand, within Atu6144 at 163.857 kb on - strand, within Atu6144 at 163.864 kb on - strand, within Atu6144 at 163.876 kb on + strand, within Atu6144 at 163.905 kb on + strand, within Atu6144 at 163.924 kb on - strand, within Atu6144 at 163.942 kb on - strand, within Atu6144 at 163.952 kb on - strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.998 kb on + strand, within Atu6144 at 164.087 kb on + strand, within Atu6144 at 164.090 kb on - strand, within Atu6144 at 164.095 kb on - strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.180 kb on + strand, within Atu6144 at 164.271 kb on + strand, within Atu6144 at 164.296 kb on + strand, within Atu6144 at 164.353 kb on + strand, within Atu6144 at 164.361 kb on - strand, within Atu6144 at 164.445 kb on + strand at 164.447 kb on + strand at 164.469 kb on + strand at 164.477 kb on - strand at 164.477 kb on - strand at 164.550 kb on - strand, within Atu6145 at 164.550 kb on - strand, within Atu6145 at 164.569 kb on + strand, within Atu6145 at 164.576 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145 at 164.725 kb on + strand, within Atu6145 at 164.775 kb on + strand, within Atu6145 at 164.783 kb on - strand, within Atu6145 at 164.783 kb on - strand, within Atu6145 at 164.788 kb on - strand, within Atu6145 at 164.891 kb on + strand, within Atu6145 at 164.899 kb on - strand, within Atu6145 at 164.906 kb on + strand, within Atu6145 at 164.932 kb on - strand, within Atu6145 at 164.986 kb on + strand, within Atu6145 at 164.994 kb on - strand, within Atu6145 at 165.056 kb on + strand, within Atu6145 at 165.062 kb on - strand, within Atu6145 at 165.085 kb on - strand, within Atu6145 at 165.155 kb on + strand, within Atu6145 at 165.159 kb on - strand, within Atu6145 at 165.163 kb on - strand, within Atu6145 at 165.179 kb on + strand, within Atu6145 at 165.179 kb on + strand, within Atu6145 at 165.183 kb on - strand, within Atu6145 at 165.187 kb on - strand, within Atu6145 at 165.221 kb on - strand at 165.242 kb on + strand at 165.291 kb on + strand at 165.299 kb on - strand at 165.299 kb on - strand at 165.322 kb on + strand at 165.330 kb on - strand, within Atu6146 at 165.332 kb on + strand, within Atu6146 at 165.340 kb on - strand, within Atu6146 at 165.366 kb on + strand, within Atu6146 at 165.423 kb on + strand, within Atu6146 at 165.429 kb on + strand, within Atu6146 at 165.439 kb on - strand, within Atu6146 at 165.449 kb on - strand, within Atu6146 at 165.449 kb on - strand, within Atu6146 at 165.534 kb on - strand, within Atu6146 at 165.591 kb on + strand, within Atu6146 at 165.594 kb on - strand, within Atu6146 at 165.600 kb on + strand, within Atu6146 at 165.613 kb on - strand, within Atu6146 at 165.686 kb on - strand, within Atu6146 at 165.754 kb on - strand at 165.777 kb on + strand at 165.836 kb on + strand at 165.874 kb on - strand, within Atu6147 at 165.975 kb on - strand, within Atu6147 at 166.050 kb on - strand, within Atu6147 at 166.078 kb on - strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.106 kb on - strand, within Atu6147 at 166.140 kb on - strand, within Atu6147 at 166.142 kb on + strand, within Atu6147 at 166.150 kb on - strand, within Atu6147 at 166.203 kb on + strand, within Atu6147 at 166.211 kb on - strand, within Atu6147 at 166.250 kb on + strand, within Atu6147 at 166.258 kb on - strand, within Atu6147
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 163,469 - Atu6143 0.78 +1.2 163,503 + Atu6143 0.82 +0.1 163,503 + Atu6143 0.82 -0.3 163,508 + Atu6143 0.83 +0.9 163,562 + Atu6143 0.89 +0.6 163,691 - +0.2 163,856 + Atu6144 0.23 +0.9 163,857 - Atu6144 0.23 +0.5 163,864 - Atu6144 0.24 -1.0 163,876 + Atu6144 0.26 -0.4 163,905 + Atu6144 0.29 +0.3 163,924 - Atu6144 0.32 -0.4 163,942 - Atu6144 0.34 +1.6 163,952 - Atu6144 0.35 +1.5 163,975 + Atu6144 0.38 +0.6 163,975 + Atu6144 0.38 -0.2 163,975 + Atu6144 0.38 +0.5 163,975 + Atu6144 0.38 +0.3 163,975 + Atu6144 0.38 -0.1 163,983 - Atu6144 0.39 -0.4 163,983 - Atu6144 0.39 +0.0 163,983 - Atu6144 0.39 +1.4 163,998 + Atu6144 0.41 +0.2 164,087 + Atu6144 0.52 +0.7 164,090 - Atu6144 0.52 +0.0 164,095 - Atu6144 0.53 +1.9 164,097 + Atu6144 0.53 +1.6 164,097 + Atu6144 0.53 -0.8 164,097 + Atu6144 0.53 +0.5 164,105 - Atu6144 0.54 +1.2 164,105 - Atu6144 0.54 +0.4 164,105 - Atu6144 0.54 +0.7 164,105 - Atu6144 0.54 +1.5 164,180 + Atu6144 0.64 -1.0 164,271 + Atu6144 0.75 -0.1 164,296 + Atu6144 0.78 +1.5 164,353 + Atu6144 0.85 +0.4 164,361 - Atu6144 0.86 -0.8 164,445 + +0.1 164,447 + +0.0 164,469 + +0.1 164,477 - -0.9 164,477 - +0.1 164,550 - Atu6145 0.11 -1.4 164,550 - Atu6145 0.11 -0.9 164,569 + Atu6145 0.13 +0.5 164,576 - Atu6145 0.14 -1.1 164,596 - Atu6145 0.16 -0.1 164,596 - Atu6145 0.16 +0.9 164,725 + Atu6145 0.32 +2.5 164,775 + Atu6145 0.38 -0.1 164,783 - Atu6145 0.39 +0.7 164,783 - Atu6145 0.39 -1.5 164,788 - Atu6145 0.40 -0.6 164,891 + Atu6145 0.52 -0.1 164,899 - Atu6145 0.53 +0.7 164,906 + Atu6145 0.54 +0.5 164,932 - Atu6145 0.57 -0.5 164,986 + Atu6145 0.64 -0.1 164,994 - Atu6145 0.65 -0.4 165,056 + Atu6145 0.72 -0.4 165,062 - Atu6145 0.73 +0.2 165,085 - Atu6145 0.76 +0.5 165,155 + Atu6145 0.84 +0.7 165,159 - Atu6145 0.85 +1.1 165,163 - Atu6145 0.85 +1.2 165,179 + Atu6145 0.87 +0.4 165,179 + Atu6145 0.87 -1.1 165,183 - Atu6145 0.88 -0.4 165,187 - Atu6145 0.88 -0.6 165,221 - -0.9 165,242 + -1.1 165,291 + +1.1 165,299 - +1.7 165,299 - +0.2 165,322 + +1.1 165,330 - Atu6146 0.11 +1.2 165,332 + Atu6146 0.11 -0.4 165,340 - Atu6146 0.13 -0.6 165,366 + Atu6146 0.19 +0.9 165,423 + Atu6146 0.31 -1.0 165,429 + Atu6146 0.32 -0.1 165,439 - Atu6146 0.34 +0.6 165,449 - Atu6146 0.37 +0.7 165,449 - Atu6146 0.37 -0.3 165,534 - Atu6146 0.55 +0.5 165,591 + Atu6146 0.68 -1.2 165,594 - Atu6146 0.68 -0.1 165,600 + Atu6146 0.69 -0.2 165,613 - Atu6146 0.72 +0.2 165,686 - Atu6146 0.88 +0.9 165,754 - +3.3 165,777 + -0.2 165,836 + +1.2 165,874 - Atu6147 0.12 +0.3 165,975 - Atu6147 0.22 +0.3 166,050 - Atu6147 0.29 -0.2 166,078 - Atu6147 0.32 -0.0 166,098 + Atu6147 0.34 -0.7 166,098 + Atu6147 0.34 +1.8 166,098 + Atu6147 0.34 -0.7 166,106 - Atu6147 0.35 +3.5 166,140 - Atu6147 0.39 +0.3 166,142 + Atu6147 0.39 +1.7 166,150 - Atu6147 0.40 +2.0 166,203 + Atu6147 0.45 +0.7 166,211 - Atu6147 0.46 -0.1 166,250 + Atu6147 0.50 +0.7 166,258 - Atu6147 0.51 +0.4
Or see this region's nucleotide sequence