Strain Fitness in Agrobacterium fabrum C58 around Atu6085

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6084 and Atu6085 are separated by 22 nucleotidesAtu6085 and Atu6086 are separated by 18 nucleotidesAtu6086 and Atu6087 are separated by 48 nucleotides Atu6084: Atu6084 - nitrilotriacetate monooxygenase, component A, at 101,725 to 103,077 Atu6084 Atu6085: Atu6085 - ABC transporter, substrate binding protein (nitrate/sulfonate), at 103,100 to 104,032 Atu6085 Atu6086: Atu6086 - ABC transporter, membrane spanning protein (nitrate/sulfonate), at 104,051 to 104,851 Atu6086 Atu6087: Atu6087 - ABC transporter, nucleotide binding/ATPase protein (nitrate/sulfonate), at 104,900 to 105,679 Atu6087 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 102.100 kb on + strand, within Atu6084at 102.158 kb on + strand, within Atu6084at 102.170 kb on - strand, within Atu6084at 102.206 kb on - strand, within Atu6084at 102.210 kb on + strand, within Atu6084at 102.312 kb on - strand, within Atu6084at 102.349 kb on + strand, within Atu6084at 102.357 kb on - strand, within Atu6084at 102.357 kb on - strand, within Atu6084at 102.393 kb on + strand, within Atu6084at 102.401 kb on - strand, within Atu6084at 102.453 kb on - strand, within Atu6084at 102.476 kb on - strand, within Atu6084at 102.492 kb on + strand, within Atu6084at 102.526 kb on - strand, within Atu6084at 102.539 kb on - strand, within Atu6084at 102.599 kb on - strand, within Atu6084at 102.607 kb on - strand, within Atu6084at 102.672 kb on + strand, within Atu6084at 102.680 kb on - strand, within Atu6084at 102.814 kb on - strand, within Atu6084at 102.898 kb on + strand, within Atu6084at 102.901 kb on - strand, within Atu6084at 102.986 kb on + strandat 102.994 kb on - strandat 103.122 kb on + strandat 103.127 kb on + strandat 103.134 kb on + strandat 103.142 kb on - strandat 103.169 kb on + strandat 103.177 kb on - strandat 103.177 kb on - strandat 103.179 kb on + strandat 103.227 kb on + strand, within Atu6085at 103.237 kb on + strand, within Atu6085at 103.245 kb on - strand, within Atu6085at 103.245 kb on - strand, within Atu6085at 103.245 kb on - strand, within Atu6085at 103.279 kb on - strand, within Atu6085at 103.294 kb on + strand, within Atu6085at 103.325 kb on - strand, within Atu6085at 103.336 kb on - strand, within Atu6085at 103.346 kb on + strand, within Atu6085at 103.360 kb on - strand, within Atu6085at 103.391 kb on - strand, within Atu6085at 103.392 kb on - strand, within Atu6085at 103.439 kb on + strand, within Atu6085at 103.440 kb on - strand, within Atu6085at 103.506 kb on + strand, within Atu6085at 103.506 kb on + strand, within Atu6085at 103.514 kb on - strand, within Atu6085at 103.514 kb on - strand, within Atu6085at 103.514 kb on - strand, within Atu6085at 103.634 kb on + strand, within Atu6085at 103.634 kb on + strand, within Atu6085at 103.695 kb on + strand, within Atu6085at 103.698 kb on - strand, within Atu6085at 103.754 kb on + strand, within Atu6085at 103.867 kb on + strand, within Atu6085at 103.893 kb on + strand, within Atu6085at 103.893 kb on + strand, within Atu6085at 103.901 kb on - strand, within Atu6085at 103.901 kb on - strand, within Atu6085at 103.901 kb on - strand, within Atu6085at 103.923 kb on - strand, within Atu6085at 103.948 kb on + strandat 103.948 kb on + strandat 103.948 kb on + strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.985 kb on + strandat 103.986 kb on - strandat 104.013 kb on + strandat 104.013 kb on + strandat 104.013 kb on + strandat 104.021 kb on + strandat 104.080 kb on - strandat 104.232 kb on - strand, within Atu6086at 104.248 kb on + strand, within Atu6086at 104.375 kb on + strand, within Atu6086at 104.406 kb on + strand, within Atu6086at 104.494 kb on + strand, within Atu6086at 104.494 kb on + strand, within Atu6086at 104.501 kb on + strand, within Atu6086at 104.511 kb on + strand, within Atu6086at 104.530 kb on + strand, within Atu6086at 104.536 kb on + strand, within Atu6086at 104.561 kb on - strand, within Atu6086at 104.577 kb on - strand, within Atu6086at 104.601 kb on + strand, within Atu6086at 104.624 kb on + strand, within Atu6086at 104.647 kb on + strand, within Atu6086at 104.647 kb on + strand, within Atu6086at 104.655 kb on - strand, within Atu6086at 104.655 kb on - strand, within Atu6086at 104.655 kb on - strand, within Atu6086at 104.655 kb on - strand, within Atu6086at 104.801 kb on - strandat 104.815 kb on + strandat 104.823 kb on - strandat 104.864 kb on - strandat 104.867 kb on + strandat 104.885 kb on - strandat 104.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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102,100 + Atu6084 0.28 +1.7
102,158 + Atu6084 0.32 -1.2
102,170 - Atu6084 0.33 -1.2
102,206 - Atu6084 0.36 +0.7
102,210 + Atu6084 0.36 +1.5
102,312 - Atu6084 0.43 +1.5
102,349 + Atu6084 0.46 +0.3
102,357 - Atu6084 0.47 -0.7
102,357 - Atu6084 0.47 +0.7
102,393 + Atu6084 0.49 -0.6
102,401 - Atu6084 0.50 -0.1
102,453 - Atu6084 0.54 -0.1
102,476 - Atu6084 0.56 +2.0
102,492 + Atu6084 0.57 -0.0
102,526 - Atu6084 0.59 +0.2
102,539 - Atu6084 0.60 +0.8
102,599 - Atu6084 0.65 +0.6
102,607 - Atu6084 0.65 +1.8
102,672 + Atu6084 0.70 +1.0
102,680 - Atu6084 0.71 +0.5
102,814 - Atu6084 0.80 +1.4
102,898 + Atu6084 0.87 -0.9
102,901 - Atu6084 0.87 -1.0
102,986 + -1.0
102,994 - +1.9
103,122 + +0.2
103,127 + -0.4
103,134 + -2.6
103,142 - +1.9
103,169 + -1.5
103,177 - +1.4
103,177 - +0.2
103,179 + +2.2
103,227 + Atu6085 0.14 -1.4
103,237 + Atu6085 0.15 +1.2
103,245 - Atu6085 0.16 -1.1
103,245 - Atu6085 0.16 -0.6
103,245 - Atu6085 0.16 -1.1
103,279 - Atu6085 0.19 -0.2
103,294 + Atu6085 0.21 +0.8
103,325 - Atu6085 0.24 -0.2
103,336 - Atu6085 0.25 -1.0
103,346 + Atu6085 0.26 -1.8
103,360 - Atu6085 0.28 +1.5
103,391 - Atu6085 0.31 +2.1
103,392 - Atu6085 0.31 -2.9
103,439 + Atu6085 0.36 -0.1
103,440 - Atu6085 0.36 -0.7
103,506 + Atu6085 0.44 +0.0
103,506 + Atu6085 0.44 -0.9
103,514 - Atu6085 0.44 +0.1
103,514 - Atu6085 0.44 -0.3
103,514 - Atu6085 0.44 +1.5
103,634 + Atu6085 0.57 -0.2
103,634 + Atu6085 0.57 +0.6
103,695 + Atu6085 0.64 +0.2
103,698 - Atu6085 0.64 -0.2
103,754 + Atu6085 0.70 -0.5
103,867 + Atu6085 0.82 +0.7
103,893 + Atu6085 0.85 -0.4
103,893 + Atu6085 0.85 -0.6
103,901 - Atu6085 0.86 -0.4
103,901 - Atu6085 0.86 +0.5
103,901 - Atu6085 0.86 -0.1
103,923 - Atu6085 0.88 +0.1
103,948 + +0.0
103,948 + +1.1
103,948 + +1.1
103,956 - -0.2
103,956 - +2.0
103,956 - +0.6
103,956 - -1.0
103,956 - +0.9
103,985 + +0.1
103,986 - -0.4
104,013 + +0.6
104,013 + +0.2
104,013 + +1.9
104,021 + +0.3
104,080 - +1.1
104,232 - Atu6086 0.23 +0.1
104,248 + Atu6086 0.25 -0.6
104,375 + Atu6086 0.40 -0.3
104,406 + Atu6086 0.44 -0.5
104,494 + Atu6086 0.55 +0.5
104,494 + Atu6086 0.55 +1.0
104,501 + Atu6086 0.56 +0.4
104,511 + Atu6086 0.57 -0.6
104,530 + Atu6086 0.60 +1.5
104,536 + Atu6086 0.61 -0.7
104,561 - Atu6086 0.64 -0.2
104,577 - Atu6086 0.66 +0.7
104,601 + Atu6086 0.69 +0.9
104,624 + Atu6086 0.72 +1.9
104,647 + Atu6086 0.74 +1.9
104,647 + Atu6086 0.74 +0.3
104,655 - Atu6086 0.75 +0.5
104,655 - Atu6086 0.75 +1.3
104,655 - Atu6086 0.75 +0.0
104,655 - Atu6086 0.75 +0.9
104,801 - +0.3
104,815 + -0.1
104,823 - -0.1
104,864 - +0.6
104,867 + -0.5
104,885 - -0.7
104,950 + +1.0

Or see this region's nucleotide sequence