Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21460 and CA264_21465 are separated by 148 nucleotides CA264_21465 and CA264_21470 are separated by 110 nucleotides
CA264_21460: CA264_21460 - hypothetical protein, at 158,939 to 160,138
_21460
CA264_21465: CA264_21465 - hypothetical protein, at 160,287 to 160,754
_21465
CA264_21470: CA264_21470 - hypothetical protein, at 160,865 to 161,497
_21470
Position (kb) 160
161 Strain fitness (log2 ratio) -1
0
1
2 at 160.021 kb on - strand at 160.021 kb on - strand at 160.063 kb on - strand at 160.273 kb on - strand at 160.273 kb on - strand at 160.306 kb on - strand at 160.308 kb on - strand at 160.367 kb on - strand, within CA264_21465 at 160.503 kb on - strand, within CA264_21465 at 160.619 kb on - strand, within CA264_21465 at 160.709 kb on - strand at 160.908 kb on + strand at 160.965 kb on + strand, within CA264_21470 at 160.966 kb on - strand, within CA264_21470 at 161.085 kb on + strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.093 kb on + strand, within CA264_21470 at 161.093 kb on + strand, within CA264_21470 at 161.176 kb on + strand, within CA264_21470 at 161.182 kb on - strand, within CA264_21470 at 161.187 kb on + strand, within CA264_21470 at 161.188 kb on - strand, within CA264_21470 at 161.188 kb on - strand, within CA264_21470 at 161.188 kb on - strand, within CA264_21470 at 161.272 kb on + strand, within CA264_21470 at 161.366 kb on + strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.408 kb on + strand, within CA264_21470 at 161.408 kb on + strand, within CA264_21470 at 161.444 kb on + strand at 161.445 kb on - strand at 161.491 kb on + strand at 161.496 kb on - strand at 161.503 kb on - strand at 161.518 kb on + strand at 161.518 kb on + strand at 161.519 kb on - strand at 161.519 kb on - strand at 161.519 kb on - strand at 161.522 kb on + strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.570 kb on - strand at 161.576 kb on + strand at 161.583 kb on - strand at 161.656 kb on - strand at 161.658 kb on + strand at 161.658 kb on + strand at 161.680 kb on + strand at 161.684 kb on + strand at 161.684 kb on + strand at 161.721 kb on + strand at 161.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 160,021 - -1.4 160,021 - +2.6 160,063 - +0.4 160,273 - -0.6 160,273 - +0.3 160,306 - +0.0 160,308 - -0.4 160,367 - CA264_21465 0.17 -0.0 160,503 - CA264_21465 0.46 -0.4 160,619 - CA264_21465 0.71 +0.5 160,709 - -0.7 160,908 + +0.3 160,965 + CA264_21470 0.16 -0.4 160,966 - CA264_21470 0.16 -1.1 161,085 + CA264_21470 0.35 +0.3 161,086 - CA264_21470 0.35 -0.1 161,086 - CA264_21470 0.35 +0.4 161,086 - CA264_21470 0.35 +0.5 161,093 + CA264_21470 0.36 +0.9 161,093 + CA264_21470 0.36 +0.9 161,176 + CA264_21470 0.49 +0.3 161,182 - CA264_21470 0.50 +0.0 161,187 + CA264_21470 0.51 +0.6 161,188 - CA264_21470 0.51 -0.4 161,188 - CA264_21470 0.51 +0.3 161,188 - CA264_21470 0.51 -0.2 161,272 + CA264_21470 0.64 -1.3 161,366 + CA264_21470 0.79 +0.2 161,367 - CA264_21470 0.79 +2.0 161,367 - CA264_21470 0.79 +0.5 161,367 - CA264_21470 0.79 -0.4 161,367 - CA264_21470 0.79 +1.6 161,367 - CA264_21470 0.79 +0.0 161,367 - CA264_21470 0.79 +0.1 161,367 - CA264_21470 0.79 -0.1 161,408 + CA264_21470 0.86 +0.6 161,408 + CA264_21470 0.86 +0.8 161,444 + +2.3 161,445 - +0.1 161,491 + +0.9 161,496 - +0.2 161,503 - +0.9 161,518 + +0.0 161,518 + +0.3 161,519 - +1.0 161,519 - +1.7 161,519 - +0.6 161,522 + +0.6 161,538 - +0.2 161,538 - -0.6 161,570 - +0.7 161,576 + -1.5 161,583 - -0.5 161,656 - +0.3 161,658 + +1.0 161,658 + +0.9 161,680 + -0.2 161,684 + +0.7 161,684 + +0.1 161,721 + -0.0 161,746 - +0.1
Or see this region's nucleotide sequence