Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21370

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21365 and CA264_21370 are separated by 330 nucleotidesCA264_21370 and CA264_21375 are separated by 94 nucleotidesCA264_21375 and CA264_21380 are separated by 11 nucleotides CA264_21365: CA264_21365 - hypothetical protein, at 137,495 to 137,875 _21365 CA264_21370: CA264_21370 - hypothetical protein, at 138,206 to 139,042 _21370 CA264_21375: CA264_21375 - hypothetical protein, at 139,137 to 139,643 _21375 CA264_21380: CA264_21380 - hypothetical protein, at 139,655 to 140,869 _21380 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 137.207 kb on - strandat 137.222 kb on + strandat 137.223 kb on - strandat 137.264 kb on + strandat 137.264 kb on + strandat 137.279 kb on + strandat 137.302 kb on + strandat 137.303 kb on - strandat 137.306 kb on + strandat 137.307 kb on - strandat 137.307 kb on - strandat 137.311 kb on + strandat 137.311 kb on + strandat 137.314 kb on + strandat 137.333 kb on - strandat 137.333 kb on - strandat 137.371 kb on + strandat 137.372 kb on - strandat 137.381 kb on + strandat 137.382 kb on - strandat 137.382 kb on - strandat 137.411 kb on + strandat 137.419 kb on + strandat 137.428 kb on + strandat 137.428 kb on + strandat 137.429 kb on - strandat 137.431 kb on - strandat 137.431 kb on - strandat 137.432 kb on + strandat 137.432 kb on + strandat 137.433 kb on - strandat 137.433 kb on - strandat 137.453 kb on + strandat 137.453 kb on + strandat 137.457 kb on + strandat 137.458 kb on - strandat 137.478 kb on + strandat 137.478 kb on + strandat 137.479 kb on - strandat 137.479 kb on - strandat 137.480 kb on + strandat 137.481 kb on - strandat 137.491 kb on + strandat 137.491 kb on + strandat 137.491 kb on + strandat 137.492 kb on - strandat 137.563 kb on - strand, within CA264_21365at 137.563 kb on - strand, within CA264_21365at 137.581 kb on - strand, within CA264_21365at 137.594 kb on + strand, within CA264_21365at 137.594 kb on + strand, within CA264_21365at 137.595 kb on - strand, within CA264_21365at 137.698 kb on + strand, within CA264_21365at 137.741 kb on + strand, within CA264_21365at 137.744 kb on - strand, within CA264_21365at 137.744 kb on - strand, within CA264_21365at 137.801 kb on - strand, within CA264_21365at 137.801 kb on - strand, within CA264_21365at 137.801 kb on - strand, within CA264_21365at 137.866 kb on + strandat 137.866 kb on + strandat 137.867 kb on - strandat 137.886 kb on + strandat 137.887 kb on - strandat 137.887 kb on - strandat 137.901 kb on + strandat 137.902 kb on - strandat 137.908 kb on - strandat 137.915 kb on - strandat 137.932 kb on - strandat 137.932 kb on - strandat 137.958 kb on + strandat 137.983 kb on - strandat 137.983 kb on - strandat 138.055 kb on + strandat 138.055 kb on + strandat 138.057 kb on + strandat 138.132 kb on + strandat 138.133 kb on - strandat 138.200 kb on + strandat 138.201 kb on - strandat 138.201 kb on - strandat 138.201 kb on - strandat 138.220 kb on + strandat 138.237 kb on - strandat 138.268 kb on - strandat 138.273 kb on + strandat 138.281 kb on - strandat 138.281 kb on - strandat 138.311 kb on - strand, within CA264_21370at 138.349 kb on + strand, within CA264_21370at 138.350 kb on - strand, within CA264_21370at 138.351 kb on + strand, within CA264_21370at 138.355 kb on + strand, within CA264_21370at 138.356 kb on - strand, within CA264_21370at 138.396 kb on - strand, within CA264_21370at 138.410 kb on + strand, within CA264_21370at 138.410 kb on + strand, within CA264_21370at 138.411 kb on - strand, within CA264_21370at 138.411 kb on - strand, within CA264_21370at 138.411 kb on - strand, within CA264_21370at 138.411 kb on - strand, within CA264_21370at 138.412 kb on + strand, within CA264_21370at 138.505 kb on - strand, within CA264_21370at 138.602 kb on + strand, within CA264_21370at 138.604 kb on + strand, within CA264_21370at 138.604 kb on + strand, within CA264_21370at 138.607 kb on + strand, within CA264_21370at 138.644 kb on + strand, within CA264_21370at 138.698 kb on + strand, within CA264_21370at 138.704 kb on - strand, within CA264_21370at 138.716 kb on + strand, within CA264_21370at 138.757 kb on - strand, within CA264_21370at 138.815 kb on + strand, within CA264_21370at 138.815 kb on + strand, within CA264_21370at 138.816 kb on - strand, within CA264_21370at 138.903 kb on + strand, within CA264_21370at 138.915 kb on + strand, within CA264_21370at 138.935 kb on + strand, within CA264_21370at 138.935 kb on + strand, within CA264_21370at 138.935 kb on + strand, within CA264_21370at 138.936 kb on - strand, within CA264_21370at 138.936 kb on - strand, within CA264_21370at 138.938 kb on - strand, within CA264_21370at 138.939 kb on + strand, within CA264_21370at 138.939 kb on + strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.960 kb on - strandat 138.981 kb on + strandat 139.041 kb on - strandat 139.065 kb on - strandat 139.099 kb on - strandat 139.104 kb on - strandat 139.125 kb on + strandat 139.126 kb on - strandat 139.126 kb on - strandat 139.151 kb on + strandat 139.152 kb on - strandat 139.152 kb on - strandat 139.171 kb on + strandat 139.171 kb on + strandat 139.210 kb on - strand, within CA264_21375at 139.215 kb on + strand, within CA264_21375at 139.215 kb on + strand, within CA264_21375at 139.216 kb on - strand, within CA264_21375at 139.216 kb on - strand, within CA264_21375at 139.236 kb on - strand, within CA264_21375at 139.240 kb on - strand, within CA264_21375at 139.285 kb on + strand, within CA264_21375at 139.288 kb on + strand, within CA264_21375at 139.288 kb on + strand, within CA264_21375at 139.335 kb on + strand, within CA264_21375at 139.336 kb on - strand, within CA264_21375at 139.338 kb on - strand, within CA264_21375at 139.338 kb on - strand, within CA264_21375at 139.357 kb on - strand, within CA264_21375at 139.384 kb on + strand, within CA264_21375at 139.385 kb on - strand, within CA264_21375at 139.393 kb on - strand, within CA264_21375at 139.424 kb on + strand, within CA264_21375at 139.448 kb on + strand, within CA264_21375at 139.449 kb on - strand, within CA264_21375at 139.484 kb on + strand, within CA264_21375at 139.500 kb on + strand, within CA264_21375at 139.501 kb on - strand, within CA264_21375at 139.501 kb on - strand, within CA264_21375at 139.501 kb on - strand, within CA264_21375at 139.576 kb on - strand, within CA264_21375at 139.635 kb on - strandat 139.818 kb on + strand, within CA264_21380at 139.820 kb on + strand, within CA264_21380at 139.822 kb on + strand, within CA264_21380at 139.880 kb on + strand, within CA264_21380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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137,207 - +0.0
137,222 + -1.2
137,223 - -0.7
137,264 + -0.6
137,264 + -1.5
137,279 + -0.3
137,302 + -0.4
137,303 - +0.1
137,306 + +0.5
137,307 - +0.3
137,307 - +0.1
137,311 + +0.1
137,311 + -0.2
137,314 + -0.1
137,333 - +1.7
137,333 - +1.4
137,371 + +0.5
137,372 - +0.7
137,381 + -0.6
137,382 - -0.6
137,382 - -0.3
137,411 + -0.2
137,419 + -0.0
137,428 + -0.3
137,428 + -1.0
137,429 - +0.1
137,431 - -0.5
137,431 - -0.5
137,432 + +0.2
137,432 + -0.3
137,433 - -0.7
137,433 - +0.4
137,453 + +1.2
137,453 + -1.1
137,457 + -0.0
137,458 - -1.4
137,478 + +0.4
137,478 + +0.0
137,479 - -0.9
137,479 - +1.9
137,480 + +1.9
137,481 - +0.2
137,491 + +0.1
137,491 + -0.4
137,491 + +0.5
137,492 - +0.1
137,563 - CA264_21365 0.18 -0.7
137,563 - CA264_21365 0.18 -0.3
137,581 - CA264_21365 0.23 -0.8
137,594 + CA264_21365 0.26 -0.0
137,594 + CA264_21365 0.26 -0.1
137,595 - CA264_21365 0.26 +0.2
137,698 + CA264_21365 0.53 -0.0
137,741 + CA264_21365 0.65 -0.8
137,744 - CA264_21365 0.65 -0.4
137,744 - CA264_21365 0.65 -1.4
137,801 - CA264_21365 0.80 +0.1
137,801 - CA264_21365 0.80 +0.2
137,801 - CA264_21365 0.80 +0.1
137,866 + -0.6
137,866 + +0.3
137,867 - -0.0
137,886 + -2.4
137,887 - +0.2
137,887 - +0.8
137,901 + +0.6
137,902 - -0.6
137,908 - -0.7
137,915 - +0.5
137,932 - -0.1
137,932 - +0.7
137,958 + +0.6
137,983 - +0.7
137,983 - -0.5
138,055 + -0.1
138,055 + -1.6
138,057 + -1.2
138,132 + -0.4
138,133 - -0.8
138,200 + -0.1
138,201 - +0.7
138,201 - -0.0
138,201 - -0.2
138,220 + +0.1
138,237 - -0.5
138,268 - -0.8
138,273 + -0.0
138,281 - -0.1
138,281 - -0.7
138,311 - CA264_21370 0.13 -0.2
138,349 + CA264_21370 0.17 -0.4
138,350 - CA264_21370 0.17 +0.3
138,351 + CA264_21370 0.17 +1.5
138,355 + CA264_21370 0.18 +1.6
138,356 - CA264_21370 0.18 +0.2
138,396 - CA264_21370 0.23 -1.7
138,410 + CA264_21370 0.24 -0.1
138,410 + CA264_21370 0.24 +0.2
138,411 - CA264_21370 0.24 +0.3
138,411 - CA264_21370 0.24 -0.1
138,411 - CA264_21370 0.24 +1.1
138,411 - CA264_21370 0.24 +0.8
138,412 + CA264_21370 0.25 -1.4
138,505 - CA264_21370 0.36 -0.4
138,602 + CA264_21370 0.47 +1.6
138,604 + CA264_21370 0.48 +0.2
138,604 + CA264_21370 0.48 -0.7
138,607 + CA264_21370 0.48 -0.4
138,644 + CA264_21370 0.52 -0.1
138,698 + CA264_21370 0.59 -0.1
138,704 - CA264_21370 0.59 -0.4
138,716 + CA264_21370 0.61 +0.1
138,757 - CA264_21370 0.66 +1.1
138,815 + CA264_21370 0.73 -0.0
138,815 + CA264_21370 0.73 +0.3
138,816 - CA264_21370 0.73 -0.1
138,903 + CA264_21370 0.83 +0.3
138,915 + CA264_21370 0.85 +1.7
138,935 + CA264_21370 0.87 -0.2
138,935 + CA264_21370 0.87 -0.0
138,935 + CA264_21370 0.87 -0.5
138,936 - CA264_21370 0.87 -0.4
138,936 - CA264_21370 0.87 -0.2
138,938 - CA264_21370 0.87 +0.1
138,939 + CA264_21370 0.88 -0.9
138,939 + CA264_21370 0.88 +0.5
138,940 - CA264_21370 0.88 +0.9
138,940 - CA264_21370 0.88 -0.9
138,940 - CA264_21370 0.88 -0.1
138,940 - CA264_21370 0.88 +1.1
138,940 - CA264_21370 0.88 -0.3
138,940 - CA264_21370 0.88 +2.3
138,960 - -0.3
138,981 + -0.5
139,041 - +0.4
139,065 - +1.1
139,099 - -1.4
139,104 - -1.6
139,125 + +1.4
139,126 - +0.9
139,126 - +2.0
139,151 + -0.5
139,152 - +0.7
139,152 - +0.3
139,171 + +0.2
139,171 + -1.0
139,210 - CA264_21375 0.14 +2.1
139,215 + CA264_21375 0.15 -0.3
139,215 + CA264_21375 0.15 -0.1
139,216 - CA264_21375 0.16 +0.8
139,216 - CA264_21375 0.16 +1.0
139,236 - CA264_21375 0.20 +1.0
139,240 - CA264_21375 0.20 +0.2
139,285 + CA264_21375 0.29 -0.3
139,288 + CA264_21375 0.30 -0.0
139,288 + CA264_21375 0.30 -0.6
139,335 + CA264_21375 0.39 -0.7
139,336 - CA264_21375 0.39 -1.0
139,338 - CA264_21375 0.40 +0.2
139,338 - CA264_21375 0.40 -0.5
139,357 - CA264_21375 0.43 -0.7
139,384 + CA264_21375 0.49 +0.0
139,385 - CA264_21375 0.49 +0.2
139,393 - CA264_21375 0.50 -0.0
139,424 + CA264_21375 0.57 -0.1
139,448 + CA264_21375 0.61 +0.7
139,449 - CA264_21375 0.62 -0.1
139,484 + CA264_21375 0.68 +0.4
139,500 + CA264_21375 0.72 -0.3
139,501 - CA264_21375 0.72 +0.4
139,501 - CA264_21375 0.72 +0.2
139,501 - CA264_21375 0.72 -0.3
139,576 - CA264_21375 0.87 -1.2
139,635 - +0.2
139,818 + CA264_21380 0.13 -0.4
139,820 + CA264_21380 0.14 -2.1
139,822 + CA264_21380 0.14 -1.7
139,880 + CA264_21380 0.19 -0.1

Or see this region's nucleotide sequence