Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21090

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21080 and CA264_21085 are separated by 43 nucleotidesCA264_21085 and CA264_21090 are separated by 9 nucleotidesCA264_21090 and CA264_21095 are separated by 85 nucleotides CA264_21080: CA264_21080 - heavy metal translocating P-type ATPase, at 79,185 to 81,212 _21080 CA264_21085: CA264_21085 - hypothetical protein, at 81,256 to 81,654 _21085 CA264_21090: CA264_21090 - hypothetical protein, at 81,664 to 81,999 _21090 CA264_21095: CA264_21095 - heavy metal translocating P-type ATPase, at 82,085 to 84,604 _21095 Position (kb) 81 82Strain fitness (log2 ratio) -2 -1 0 1at 80.664 kb on - strand, within CA264_21080at 80.834 kb on - strand, within CA264_21080at 80.882 kb on - strand, within CA264_21080at 80.882 kb on - strand, within CA264_21080at 80.926 kb on + strand, within CA264_21080at 80.926 kb on + strand, within CA264_21080at 80.927 kb on - strand, within CA264_21080at 81.100 kb on + strandat 81.139 kb on + strandat 81.173 kb on - strandat 81.177 kb on - strandat 81.177 kb on - strandat 81.177 kb on - strandat 81.228 kb on - strandat 81.244 kb on + strandat 81.244 kb on + strandat 81.245 kb on - strandat 81.245 kb on - strandat 81.254 kb on - strandat 81.254 kb on - strandat 81.254 kb on - strandat 81.288 kb on + strandat 81.300 kb on + strand, within CA264_21085at 81.351 kb on + strand, within CA264_21085at 81.351 kb on + strand, within CA264_21085at 81.356 kb on - strand, within CA264_21085at 81.376 kb on + strand, within CA264_21085at 81.376 kb on + strand, within CA264_21085at 81.418 kb on - strand, within CA264_21085at 81.452 kb on - strand, within CA264_21085at 81.535 kb on + strand, within CA264_21085at 81.535 kb on + strand, within CA264_21085at 81.536 kb on - strand, within CA264_21085at 81.546 kb on - strand, within CA264_21085at 81.572 kb on - strandat 81.572 kb on - strand, within CA264_21085at 81.618 kb on + strandat 81.619 kb on - strandat 81.638 kb on + strandat 81.710 kb on - strand, within CA264_21090at 81.744 kb on - strand, within CA264_21090at 81.744 kb on - strand, within CA264_21090at 81.847 kb on + strand, within CA264_21090at 81.847 kb on + strand, within CA264_21090at 81.847 kb on + strand, within CA264_21090at 81.848 kb on - strand, within CA264_21090at 81.869 kb on - strand, within CA264_21090at 81.877 kb on - strand, within CA264_21090at 81.877 kb on - strand, within CA264_21090at 81.966 kb on + strandat 81.967 kb on - strandat 82.032 kb on + strandat 82.032 kb on + strandat 82.033 kb on - strandat 82.051 kb on + strandat 82.052 kb on - strandat 82.060 kb on - strandat 82.060 kb on - strandat 82.076 kb on - strandat 82.078 kb on - strandat 82.191 kb on + strandat 82.200 kb on + strandat 82.200 kb on + strandat 82.201 kb on - strandat 82.250 kb on + strandat 82.478 kb on - strand, within CA264_21095at 82.516 kb on - strand, within CA264_21095at 82.776 kb on + strand, within CA264_21095at 82.784 kb on + strand, within CA264_21095at 82.784 kb on + strand, within CA264_21095at 82.784 kb on + strand, within CA264_21095at 82.785 kb on - strand, within CA264_21095at 82.785 kb on - strand, within CA264_21095at 82.843 kb on - strand, within CA264_21095at 82.843 kb on - strand, within CA264_21095at 82.847 kb on - strand, within CA264_21095at 82.901 kb on - strand, within CA264_21095at 82.970 kb on + strand, within CA264_21095at 82.970 kb on + strand, within CA264_21095at 82.982 kb on - strand, within CA264_21095

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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80,664 - CA264_21080 0.73 -2.1
80,834 - CA264_21080 0.81 -0.1
80,882 - CA264_21080 0.84 +1.1
80,882 - CA264_21080 0.84 -0.4
80,926 + CA264_21080 0.86 -0.5
80,926 + CA264_21080 0.86 +0.0
80,927 - CA264_21080 0.86 -0.4
81,100 + +0.1
81,139 + -0.2
81,173 - -0.0
81,177 - +0.7
81,177 - -0.9
81,177 - +0.1
81,228 - +0.0
81,244 + -0.0
81,244 + +0.1
81,245 - -0.2
81,245 - -0.1
81,254 - -0.3
81,254 - -0.1
81,254 - -0.2
81,288 + +1.1
81,300 + CA264_21085 0.11 -1.0
81,351 + CA264_21085 0.24 -0.1
81,351 + CA264_21085 0.24 -0.3
81,356 - CA264_21085 0.25 +0.0
81,376 + CA264_21085 0.30 +0.1
81,376 + CA264_21085 0.30 -0.3
81,418 - CA264_21085 0.41 -1.3
81,452 - CA264_21085 0.49 +0.8
81,535 + CA264_21085 0.70 +0.5
81,535 + CA264_21085 0.70 -0.4
81,536 - CA264_21085 0.70 +0.7
81,546 - CA264_21085 0.73 +0.4
81,572 - +0.4
81,572 - CA264_21085 0.79 -0.3
81,618 + +1.1
81,619 - +0.2
81,638 + -0.4
81,710 - CA264_21090 0.14 -0.1
81,744 - CA264_21090 0.24 +0.7
81,744 - CA264_21090 0.24 +0.3
81,847 + CA264_21090 0.54 -0.3
81,847 + CA264_21090 0.54 -0.1
81,847 + CA264_21090 0.54 -0.3
81,848 - CA264_21090 0.55 -0.4
81,869 - CA264_21090 0.61 +0.8
81,877 - CA264_21090 0.63 +0.3
81,877 - CA264_21090 0.63 +1.4
81,966 + +1.0
81,967 - -1.7
82,032 + +0.4
82,032 + -0.6
82,033 - -0.1
82,051 + -1.7
82,052 - -0.2
82,060 - -0.1
82,060 - +0.1
82,076 - -0.5
82,078 - -0.2
82,191 + -0.5
82,200 + -0.2
82,200 + +0.5
82,201 - -0.3
82,250 + +1.5
82,478 - CA264_21095 0.16 +0.5
82,516 - CA264_21095 0.17 +1.5
82,776 + CA264_21095 0.27 +0.1
82,784 + CA264_21095 0.28 +0.0
82,784 + CA264_21095 0.28 -0.0
82,784 + CA264_21095 0.28 -0.4
82,785 - CA264_21095 0.28 -0.4
82,785 - CA264_21095 0.28 -0.6
82,843 - CA264_21095 0.30 -0.1
82,843 - CA264_21095 0.30 -0.0
82,847 - CA264_21095 0.30 +0.4
82,901 - CA264_21095 0.32 +0.4
82,970 + CA264_21095 0.35 -1.2
82,970 + CA264_21095 0.35 -0.3
82,982 - CA264_21095 0.36 -0.2

Or see this region's nucleotide sequence