Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20925

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20920 and CA264_20925 are separated by 381 nucleotidesCA264_20925 and CA264_20930 overlap by 1 nucleotidesCA264_20930 and CA264_20935 are separated by 9 nucleotides CA264_20920: CA264_20920 - hypothetical protein, at 49,259 to 50,200 _20920 CA264_20925: CA264_20925 - hypothetical protein, at 50,582 to 50,791 _20925 CA264_20930: CA264_20930 - hypothetical protein, at 50,791 to 51,402 _20930 CA264_20935: CA264_20935 - transcriptional regulator, at 51,412 to 51,783 _20935 Position (kb) 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 49.645 kb on + strand, within CA264_20920at 49.646 kb on - strand, within CA264_20920at 49.676 kb on - strand, within CA264_20920at 49.699 kb on + strand, within CA264_20920at 49.713 kb on + strand, within CA264_20920at 49.716 kb on + strand, within CA264_20920at 49.790 kb on + strand, within CA264_20920at 49.791 kb on - strand, within CA264_20920at 49.794 kb on - strand, within CA264_20920at 49.815 kb on + strand, within CA264_20920at 49.956 kb on + strand, within CA264_20920at 49.956 kb on + strand, within CA264_20920at 49.956 kb on + strand, within CA264_20920at 49.956 kb on - strand, within CA264_20920at 49.957 kb on - strand, within CA264_20920at 49.961 kb on + strand, within CA264_20920at 49.966 kb on + strand, within CA264_20920at 49.966 kb on + strand, within CA264_20920at 50.089 kb on + strand, within CA264_20920at 50.105 kb on + strand, within CA264_20920at 50.105 kb on + strand, within CA264_20920at 50.105 kb on + strand, within CA264_20920at 50.105 kb on + strand, within CA264_20920at 50.125 kb on + strandat 50.138 kb on + strandat 50.139 kb on - strandat 50.139 kb on - strandat 50.139 kb on - strandat 50.141 kb on - strandat 50.188 kb on + strandat 50.189 kb on - strandat 50.189 kb on - strandat 50.199 kb on - strandat 50.199 kb on - strandat 50.264 kb on - strandat 50.330 kb on + strandat 50.367 kb on - strandat 50.425 kb on + strandat 50.426 kb on - strandat 50.426 kb on - strandat 50.427 kb on + strandat 50.435 kb on + strandat 50.489 kb on + strandat 50.490 kb on - strandat 50.761 kb on + strand, within CA264_20925at 50.761 kb on + strand, within CA264_20925at 50.762 kb on - strand, within CA264_20925at 50.786 kb on - strandat 50.802 kb on + strandat 50.809 kb on + strandat 50.880 kb on - strand, within CA264_20930at 50.904 kb on + strand, within CA264_20930at 50.906 kb on + strand, within CA264_20930at 51.151 kb on - strand, within CA264_20930at 51.255 kb on - strand, within CA264_20930at 51.429 kb on + strandat 51.439 kb on - strandat 51.488 kb on + strand, within CA264_20935at 51.633 kb on - strand, within CA264_20935at 51.763 kb on - strandat 51.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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49,645 + CA264_20920 0.41 -0.8
49,646 - CA264_20920 0.41 -0.5
49,676 - CA264_20920 0.44 -0.4
49,699 + CA264_20920 0.47 -1.0
49,713 + CA264_20920 0.48 +0.9
49,716 + CA264_20920 0.49 -0.7
49,790 + CA264_20920 0.56 +0.1
49,791 - CA264_20920 0.56 +0.2
49,794 - CA264_20920 0.57 -0.4
49,815 + CA264_20920 0.59 +0.7
49,956 + CA264_20920 0.74 +1.5
49,956 + CA264_20920 0.74 +0.1
49,956 + CA264_20920 0.74 -0.7
49,956 - CA264_20920 0.74 -0.3
49,957 - CA264_20920 0.74 -0.1
49,961 + CA264_20920 0.75 +1.7
49,966 + CA264_20920 0.75 +0.0
49,966 + CA264_20920 0.75 -1.4
50,089 + CA264_20920 0.88 -0.3
50,105 + CA264_20920 0.90 +1.0
50,105 + CA264_20920 0.90 +2.4
50,105 + CA264_20920 0.90 -0.2
50,105 + CA264_20920 0.90 +1.3
50,125 + -0.9
50,138 + +0.3
50,139 - -1.0
50,139 - -0.3
50,139 - +0.4
50,141 - +0.7
50,188 + +0.5
50,189 - -1.0
50,189 - -1.4
50,199 - +0.4
50,199 - +0.7
50,264 - -0.6
50,330 + -0.3
50,367 - +0.5
50,425 + -0.0
50,426 - -0.3
50,426 - -0.0
50,427 + +0.9
50,435 + -0.1
50,489 + -2.3
50,490 - +1.6
50,761 + CA264_20925 0.85 +0.9
50,761 + CA264_20925 0.85 -0.7
50,762 - CA264_20925 0.86 -0.2
50,786 - +0.3
50,802 + +0.5
50,809 + -0.6
50,880 - CA264_20930 0.15 -0.3
50,904 + CA264_20930 0.18 +0.1
50,906 + CA264_20930 0.19 -0.3
51,151 - CA264_20930 0.59 +1.3
51,255 - CA264_20930 0.76 +1.7
51,429 + +0.3
51,439 - +0.1
51,488 + CA264_20935 0.20 -1.7
51,633 - CA264_20935 0.59 +1.0
51,763 - +0.3
51,791 - +0.1

Or see this region's nucleotide sequence