Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20525 and CA264_20530 are separated by 23 nucleotides CA264_20530 and CA264_20535 are separated by 48 nucleotides CA264_20535 and CA264_20540 are separated by 193 nucleotides
CA264_20525: CA264_20525 - prenyltransferase, at 4,728,868 to 4,729,776
_20525
CA264_20530: CA264_20530 - hypothetical protein, at 4,729,800 to 4,730,687
_20530
CA264_20535: CA264_20535 - hypothetical protein, at 4,730,736 to 4,731,239
_20535
CA264_20540: CA264_20540 - transglycosylase, at 4,731,433 to 4,733,763
_20540
Position (kb)
4730
4731
4732 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4729.762 kb on - strand at 4729.845 kb on + strand at 4729.914 kb on + strand, within CA264_20530 at 4729.915 kb on - strand, within CA264_20530 at 4729.977 kb on - strand, within CA264_20530 at 4730.005 kb on + strand, within CA264_20530 at 4730.061 kb on + strand, within CA264_20530 at 4730.061 kb on + strand, within CA264_20530 at 4730.269 kb on - strand, within CA264_20530 at 4730.269 kb on - strand, within CA264_20530 at 4730.270 kb on + strand, within CA264_20530 at 4730.306 kb on - strand, within CA264_20530 at 4730.311 kb on + strand, within CA264_20530 at 4730.346 kb on - strand, within CA264_20530 at 4730.488 kb on + strand, within CA264_20530 at 4730.715 kb on + strand at 4730.716 kb on - strand at 4730.729 kb on + strand at 4730.730 kb on - strand at 4730.790 kb on - strand, within CA264_20535 at 4731.082 kb on - strand, within CA264_20535 at 4731.094 kb on - strand, within CA264_20535 at 4731.131 kb on + strand, within CA264_20535 at 4731.133 kb on + strand, within CA264_20535 at 4731.133 kb on + strand, within CA264_20535 at 4731.134 kb on - strand, within CA264_20535 at 4731.157 kb on + strand, within CA264_20535 at 4731.276 kb on + strand at 4731.278 kb on + strand at 4731.339 kb on - strand at 4731.339 kb on - strand at 4731.394 kb on + strand at 4731.542 kb on - strand at 4731.559 kb on + strand at 4731.559 kb on + strand at 4731.559 kb on + strand at 4731.560 kb on - strand at 4731.571 kb on + strand at 4731.572 kb on - strand at 4731.708 kb on + strand, within CA264_20540 at 4731.708 kb on + strand, within CA264_20540 at 4731.709 kb on - strand, within CA264_20540 at 4731.736 kb on - strand, within CA264_20540 at 4731.753 kb on - strand, within CA264_20540 at 4731.806 kb on - strand, within CA264_20540 at 4731.847 kb on - strand, within CA264_20540 at 4731.847 kb on - strand, within CA264_20540 at 4731.872 kb on - strand, within CA264_20540 at 4731.924 kb on + strand, within CA264_20540 at 4732.009 kb on + strand, within CA264_20540 at 4732.010 kb on - strand, within CA264_20540 at 4732.094 kb on + strand, within CA264_20540 at 4732.095 kb on - strand, within CA264_20540 at 4732.144 kb on + strand, within CA264_20540 at 4732.147 kb on + strand, within CA264_20540 at 4732.148 kb on - strand, within CA264_20540 at 4732.162 kb on - strand, within CA264_20540 at 4732.212 kb on - strand, within CA264_20540 at 4732.216 kb on + strand, within CA264_20540 at 4732.217 kb on - strand, within CA264_20540 at 4732.217 kb on - strand, within CA264_20540 at 4732.222 kb on + strand, within CA264_20540 at 4732.222 kb on + strand, within CA264_20540
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 4,729,762 - -0.1 4,729,845 + -1.4 4,729,914 + CA264_20530 0.13 +0.9 4,729,915 - CA264_20530 0.13 +0.2 4,729,977 - CA264_20530 0.20 -0.1 4,730,005 + CA264_20530 0.23 +1.2 4,730,061 + CA264_20530 0.29 +0.8 4,730,061 + CA264_20530 0.29 -1.3 4,730,269 - CA264_20530 0.53 -0.5 4,730,269 - CA264_20530 0.53 -0.7 4,730,270 + CA264_20530 0.53 -0.9 4,730,306 - CA264_20530 0.57 +0.7 4,730,311 + CA264_20530 0.58 -1.7 4,730,346 - CA264_20530 0.61 -0.1 4,730,488 + CA264_20530 0.77 -1.7 4,730,715 + -1.1 4,730,716 - -1.9 4,730,729 + -0.7 4,730,730 - +0.2 4,730,790 - CA264_20535 0.11 -0.0 4,731,082 - CA264_20535 0.69 -1.6 4,731,094 - CA264_20535 0.71 -2.2 4,731,131 + CA264_20535 0.78 -2.8 4,731,133 + CA264_20535 0.79 -2.2 4,731,133 + CA264_20535 0.79 -0.4 4,731,134 - CA264_20535 0.79 -2.1 4,731,157 + CA264_20535 0.84 -1.6 4,731,276 + -1.7 4,731,278 + -1.5 4,731,339 - -0.5 4,731,339 - -1.8 4,731,394 + -1.2 4,731,542 - +0.3 4,731,559 + +0.1 4,731,559 + +2.5 4,731,559 + -0.4 4,731,560 - -0.5 4,731,571 + +0.3 4,731,572 - -0.5 4,731,708 + CA264_20540 0.12 +0.5 4,731,708 + CA264_20540 0.12 +0.8 4,731,709 - CA264_20540 0.12 +1.8 4,731,736 - CA264_20540 0.13 +0.6 4,731,753 - CA264_20540 0.14 +0.1 4,731,806 - CA264_20540 0.16 +0.2 4,731,847 - CA264_20540 0.18 +0.8 4,731,847 - CA264_20540 0.18 -0.4 4,731,872 - CA264_20540 0.19 +0.5 4,731,924 + CA264_20540 0.21 +0.7 4,732,009 + CA264_20540 0.25 -0.7 4,732,010 - CA264_20540 0.25 -0.6 4,732,094 + CA264_20540 0.28 +0.6 4,732,095 - CA264_20540 0.28 -0.3 4,732,144 + CA264_20540 0.31 +1.5 4,732,147 + CA264_20540 0.31 +0.5 4,732,148 - CA264_20540 0.31 +0.1 4,732,162 - CA264_20540 0.31 +0.5 4,732,212 - CA264_20540 0.33 +1.0 4,732,216 + CA264_20540 0.34 +1.6 4,732,217 - CA264_20540 0.34 +0.1 4,732,217 - CA264_20540 0.34 +1.2 4,732,222 + CA264_20540 0.34 -0.2 4,732,222 + CA264_20540 0.34 +0.4
Or see this region's nucleotide sequence