Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18255

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18245 and CA264_18250 are separated by 47 nucleotidesCA264_18250 and CA264_18255 are separated by 56 nucleotidesCA264_18255 and CA264_18260 are separated by 288 nucleotides CA264_18245: CA264_18245 - NADH-quinone oxidoreductase subunit A, at 4,243,005 to 4,243,514 _18245 CA264_18250: CA264_18250 - NADH-quinone oxidoreductase subunit B, at 4,243,562 to 4,244,104 _18250 CA264_18255: CA264_18255 - hypothetical protein, at 4,244,161 to 4,247,547 _18255 CA264_18260: CA264_18260 - NADH-quinone oxidoreductase subunit C, at 4,247,836 to 4,248,432 _18260 Position (kb) 4244 4245 4246 4247 4248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4243.334 kb on + strand, within CA264_18245at 4243.452 kb on + strand, within CA264_18245at 4243.512 kb on + strandat 4243.591 kb on - strandat 4243.616 kb on - strandat 4243.672 kb on + strand, within CA264_18250at 4244.115 kb on + strandat 4244.122 kb on + strandat 4244.225 kb on + strandat 4244.226 kb on - strandat 4244.227 kb on + strandat 4244.232 kb on + strandat 4244.309 kb on + strandat 4244.461 kb on - strandat 4244.540 kb on - strand, within CA264_18255at 4244.544 kb on - strand, within CA264_18255at 4244.550 kb on + strand, within CA264_18255at 4244.551 kb on - strand, within CA264_18255at 4244.551 kb on - strand, within CA264_18255at 4244.597 kb on + strand, within CA264_18255at 4244.599 kb on + strand, within CA264_18255at 4244.599 kb on + strand, within CA264_18255at 4244.600 kb on - strand, within CA264_18255at 4244.600 kb on - strand, within CA264_18255at 4244.623 kb on + strand, within CA264_18255at 4244.624 kb on - strand, within CA264_18255at 4244.649 kb on + strand, within CA264_18255at 4244.649 kb on + strand, within CA264_18255at 4244.833 kb on + strand, within CA264_18255at 4244.833 kb on + strand, within CA264_18255at 4244.923 kb on - strand, within CA264_18255at 4245.007 kb on + strand, within CA264_18255at 4245.008 kb on - strand, within CA264_18255at 4245.008 kb on - strand, within CA264_18255at 4245.093 kb on + strand, within CA264_18255at 4245.175 kb on + strand, within CA264_18255at 4245.240 kb on + strand, within CA264_18255at 4245.246 kb on + strand, within CA264_18255at 4245.246 kb on + strand, within CA264_18255at 4245.247 kb on - strand, within CA264_18255at 4245.310 kb on + strand, within CA264_18255at 4245.324 kb on + strand, within CA264_18255at 4245.409 kb on + strand, within CA264_18255at 4245.418 kb on + strand, within CA264_18255at 4245.418 kb on + strand, within CA264_18255at 4245.419 kb on - strand, within CA264_18255at 4245.711 kb on + strand, within CA264_18255at 4245.736 kb on - strand, within CA264_18255at 4245.743 kb on + strand, within CA264_18255at 4245.743 kb on + strand, within CA264_18255at 4245.744 kb on - strand, within CA264_18255at 4245.744 kb on - strand, within CA264_18255at 4245.744 kb on - strand, within CA264_18255at 4245.849 kb on + strand, within CA264_18255at 4245.886 kb on + strand, within CA264_18255at 4245.887 kb on - strand, within CA264_18255at 4245.973 kb on + strand, within CA264_18255at 4246.025 kb on - strand, within CA264_18255at 4246.046 kb on - strand, within CA264_18255at 4246.084 kb on + strand, within CA264_18255at 4246.084 kb on + strand, within CA264_18255at 4246.085 kb on - strand, within CA264_18255at 4246.108 kb on - strand, within CA264_18255at 4246.177 kb on - strand, within CA264_18255at 4246.316 kb on + strand, within CA264_18255at 4246.316 kb on + strand, within CA264_18255at 4246.317 kb on - strand, within CA264_18255at 4246.317 kb on - strand, within CA264_18255at 4246.317 kb on - strand, within CA264_18255at 4246.333 kb on + strand, within CA264_18255at 4246.367 kb on - strand, within CA264_18255at 4246.414 kb on + strand, within CA264_18255at 4246.415 kb on - strand, within CA264_18255at 4246.471 kb on - strand, within CA264_18255at 4246.471 kb on - strand, within CA264_18255at 4246.541 kb on + strand, within CA264_18255at 4246.541 kb on + strand, within CA264_18255at 4246.541 kb on + strand, within CA264_18255at 4246.604 kb on + strand, within CA264_18255at 4246.655 kb on + strand, within CA264_18255at 4246.656 kb on - strand, within CA264_18255at 4246.693 kb on - strand, within CA264_18255at 4246.693 kb on - strand, within CA264_18255at 4246.693 kb on - strand, within CA264_18255at 4246.696 kb on + strand, within CA264_18255at 4246.742 kb on - strand, within CA264_18255at 4246.742 kb on - strand, within CA264_18255at 4246.762 kb on + strand, within CA264_18255at 4246.763 kb on - strand, within CA264_18255at 4246.763 kb on - strand, within CA264_18255at 4247.024 kb on + strand, within CA264_18255at 4247.032 kb on + strand, within CA264_18255at 4247.032 kb on + strand, within CA264_18255at 4247.032 kb on + strand, within CA264_18255at 4247.033 kb on - strand, within CA264_18255at 4247.033 kb on - strand, within CA264_18255at 4247.033 kb on - strand, within CA264_18255at 4247.099 kb on + strand, within CA264_18255at 4247.133 kb on + strand, within CA264_18255at 4247.133 kb on + strand, within CA264_18255at 4247.134 kb on - strand, within CA264_18255at 4247.151 kb on + strand, within CA264_18255at 4247.151 kb on + strand, within CA264_18255at 4247.152 kb on - strand, within CA264_18255at 4247.152 kb on - strand, within CA264_18255at 4247.167 kb on + strand, within CA264_18255at 4247.167 kb on + strand, within CA264_18255at 4247.210 kb on + strandat 4247.230 kb on + strandat 4247.345 kb on + strandat 4247.345 kb on + strandat 4247.403 kb on + strandat 4247.552 kb on + strandat 4247.670 kb on + strandat 4247.739 kb on - strandat 4247.769 kb on + strandat 4247.769 kb on + strandat 4247.774 kb on - strandat 4247.852 kb on + strandat 4247.852 kb on + strandat 4247.867 kb on + strandat 4247.990 kb on - strand, within CA264_18260at 4248.310 kb on + strand, within CA264_18260at 4248.310 kb on + strand, within CA264_18260at 4248.313 kb on + strand, within CA264_18260at 4248.313 kb on + strand, within CA264_18260at 4248.314 kb on - strand, within CA264_18260at 4248.383 kb on + strandat 4248.384 kb on - strandat 4248.384 kb on - strandat 4248.430 kb on + strandat 4248.431 kb on - strandat 4248.464 kb on + strandat 4248.464 kb on + strandat 4248.464 kb on + strandat 4248.469 kb on + strandat 4248.469 kb on + strandat 4248.470 kb on - strandat 4248.518 kb on + strandat 4248.518 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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4,243,334 + CA264_18245 0.65 -2.0
4,243,452 + CA264_18245 0.88 -0.9
4,243,512 + -0.5
4,243,591 - -0.1
4,243,616 - -1.4
4,243,672 + CA264_18250 0.20 -2.0
4,244,115 + -0.7
4,244,122 + +0.7
4,244,225 + -0.2
4,244,226 - -0.0
4,244,227 + -0.1
4,244,232 + +0.1
4,244,309 + -1.4
4,244,461 - +1.1
4,244,540 - CA264_18255 0.11 +1.1
4,244,544 - CA264_18255 0.11 +0.5
4,244,550 + CA264_18255 0.11 -0.5
4,244,551 - CA264_18255 0.12 +0.6
4,244,551 - CA264_18255 0.12 +0.2
4,244,597 + CA264_18255 0.13 +0.2
4,244,599 + CA264_18255 0.13 -0.4
4,244,599 + CA264_18255 0.13 -0.6
4,244,600 - CA264_18255 0.13 -0.4
4,244,600 - CA264_18255 0.13 -0.0
4,244,623 + CA264_18255 0.14 +0.0
4,244,624 - CA264_18255 0.14 -0.2
4,244,649 + CA264_18255 0.14 +0.2
4,244,649 + CA264_18255 0.14 +1.8
4,244,833 + CA264_18255 0.20 -0.8
4,244,833 + CA264_18255 0.20 +0.5
4,244,923 - CA264_18255 0.22 -0.3
4,245,007 + CA264_18255 0.25 +0.6
4,245,008 - CA264_18255 0.25 +0.5
4,245,008 - CA264_18255 0.25 +0.0
4,245,093 + CA264_18255 0.28 +0.7
4,245,175 + CA264_18255 0.30 -1.0
4,245,240 + CA264_18255 0.32 -0.2
4,245,246 + CA264_18255 0.32 +0.2
4,245,246 + CA264_18255 0.32 -1.3
4,245,247 - CA264_18255 0.32 +1.0
4,245,310 + CA264_18255 0.34 -0.8
4,245,324 + CA264_18255 0.34 -0.2
4,245,409 + CA264_18255 0.37 +1.2
4,245,418 + CA264_18255 0.37 +0.4
4,245,418 + CA264_18255 0.37 +1.0
4,245,419 - CA264_18255 0.37 +0.4
4,245,711 + CA264_18255 0.46 -0.3
4,245,736 - CA264_18255 0.47 +0.8
4,245,743 + CA264_18255 0.47 -0.2
4,245,743 + CA264_18255 0.47 -1.1
4,245,744 - CA264_18255 0.47 +0.6
4,245,744 - CA264_18255 0.47 +1.3
4,245,744 - CA264_18255 0.47 -1.3
4,245,849 + CA264_18255 0.50 +0.6
4,245,886 + CA264_18255 0.51 +0.1
4,245,887 - CA264_18255 0.51 -0.2
4,245,973 + CA264_18255 0.53 -0.7
4,246,025 - CA264_18255 0.55 -0.4
4,246,046 - CA264_18255 0.56 +0.1
4,246,084 + CA264_18255 0.57 +0.1
4,246,084 + CA264_18255 0.57 +1.1
4,246,085 - CA264_18255 0.57 -0.3
4,246,108 - CA264_18255 0.57 -1.4
4,246,177 - CA264_18255 0.60 -0.5
4,246,316 + CA264_18255 0.64 -0.9
4,246,316 + CA264_18255 0.64 +0.1
4,246,317 - CA264_18255 0.64 -0.4
4,246,317 - CA264_18255 0.64 -0.3
4,246,317 - CA264_18255 0.64 -0.3
4,246,333 + CA264_18255 0.64 -0.3
4,246,367 - CA264_18255 0.65 -0.1
4,246,414 + CA264_18255 0.67 +0.0
4,246,415 - CA264_18255 0.67 +0.5
4,246,471 - CA264_18255 0.68 -0.3
4,246,471 - CA264_18255 0.68 -1.3
4,246,541 + CA264_18255 0.70 -0.4
4,246,541 + CA264_18255 0.70 -0.6
4,246,541 + CA264_18255 0.70 -0.8
4,246,604 + CA264_18255 0.72 +0.5
4,246,655 + CA264_18255 0.74 +0.5
4,246,656 - CA264_18255 0.74 +0.6
4,246,693 - CA264_18255 0.75 -0.3
4,246,693 - CA264_18255 0.75 +0.5
4,246,693 - CA264_18255 0.75 +1.3
4,246,696 + CA264_18255 0.75 +0.0
4,246,742 - CA264_18255 0.76 +0.6
4,246,742 - CA264_18255 0.76 -0.5
4,246,762 + CA264_18255 0.77 -1.7
4,246,763 - CA264_18255 0.77 +0.1
4,246,763 - CA264_18255 0.77 -0.3
4,247,024 + CA264_18255 0.85 -0.1
4,247,032 + CA264_18255 0.85 +0.8
4,247,032 + CA264_18255 0.85 -0.8
4,247,032 + CA264_18255 0.85 +0.1
4,247,033 - CA264_18255 0.85 -0.8
4,247,033 - CA264_18255 0.85 +0.9
4,247,033 - CA264_18255 0.85 +0.8
4,247,099 + CA264_18255 0.87 -0.2
4,247,133 + CA264_18255 0.88 +0.2
4,247,133 + CA264_18255 0.88 -1.8
4,247,134 - CA264_18255 0.88 +0.3
4,247,151 + CA264_18255 0.88 +1.0
4,247,151 + CA264_18255 0.88 +0.5
4,247,152 - CA264_18255 0.88 -0.3
4,247,152 - CA264_18255 0.88 +0.1
4,247,167 + CA264_18255 0.89 +0.1
4,247,167 + CA264_18255 0.89 +0.4
4,247,210 + +0.3
4,247,230 + +0.9
4,247,345 + +0.3
4,247,345 + -0.4
4,247,403 + -0.3
4,247,552 + +0.3
4,247,670 + +0.2
4,247,739 - +0.5
4,247,769 + +0.4
4,247,769 + -0.7
4,247,774 - -0.1
4,247,852 + -2.5
4,247,852 + -0.2
4,247,867 + -0.8
4,247,990 - CA264_18260 0.26 -1.0
4,248,310 + CA264_18260 0.79 +0.5
4,248,310 + CA264_18260 0.79 -3.0
4,248,313 + CA264_18260 0.80 -1.1
4,248,313 + CA264_18260 0.80 -0.6
4,248,314 - CA264_18260 0.80 -1.0
4,248,383 + -0.3
4,248,384 - -0.8
4,248,384 - -1.1
4,248,430 + -0.2
4,248,431 - -0.2
4,248,464 + -1.3
4,248,464 + +0.8
4,248,464 + +0.2
4,248,469 + -0.7
4,248,469 + +1.7
4,248,470 - -1.7
4,248,518 + -0.3
4,248,518 + -0.8

Or see this region's nucleotide sequence