Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18175

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18165 and CA264_18170 are separated by 214 nucleotidesCA264_18170 and CA264_18175 overlap by 4 nucleotidesCA264_18175 and CA264_18180 are separated by 235 nucleotides CA264_18165: CA264_18165 - S1/P1 Nuclease, at 4,224,629 to 4,225,600 _18165 CA264_18170: CA264_18170 - peptide deformylase, at 4,225,815 to 4,226,384 _18170 CA264_18175: CA264_18175 - Holliday junction resolvase RuvX, at 4,226,381 to 4,226,797 _18175 CA264_18180: CA264_18180 - peptidase S41, at 4,227,033 to 4,228,694 _18180 Position (kb) 4226 4227Strain fitness (log2 ratio) -2 -1 0 1 2at 4225.439 kb on - strand, within CA264_18165at 4225.538 kb on - strandat 4225.612 kb on - strandat 4225.631 kb on - strandat 4225.631 kb on - strandat 4225.725 kb on + strandat 4225.725 kb on + strandat 4225.791 kb on + strandat 4225.798 kb on + strandat 4225.798 kb on + strandat 4225.799 kb on - strandat 4225.799 kb on - strandat 4225.803 kb on + strandat 4225.811 kb on + strandat 4225.852 kb on + strandat 4225.853 kb on - strandat 4226.386 kb on + strandat 4226.386 kb on + strandat 4226.798 kb on - strandat 4226.801 kb on + strandat 4226.801 kb on + strandat 4226.838 kb on - strandat 4226.852 kb on + strandat 4226.940 kb on - strandat 4226.940 kb on - strandat 4226.943 kb on + strandat 4226.943 kb on + strandat 4226.944 kb on - strandat 4226.946 kb on - strandat 4226.946 kb on - strandat 4226.964 kb on + strandat 4226.982 kb on + strandat 4226.983 kb on - strandat 4226.983 kb on - strandat 4226.983 kb on - strandat 4227.032 kb on + strandat 4227.032 kb on + strandat 4227.222 kb on + strand, within CA264_18180at 4227.223 kb on - strand, within CA264_18180at 4227.319 kb on - strand, within CA264_18180at 4227.319 kb on - strand, within CA264_18180at 4227.386 kb on - strand, within CA264_18180at 4227.415 kb on - strand, within CA264_18180at 4227.459 kb on - strand, within CA264_18180at 4227.461 kb on - strand, within CA264_18180at 4227.568 kb on + strand, within CA264_18180at 4227.661 kb on - strand, within CA264_18180at 4227.661 kb on - strand, within CA264_18180at 4227.662 kb on + strand, within CA264_18180at 4227.663 kb on - strand, within CA264_18180at 4227.672 kb on - strand, within CA264_18180at 4227.775 kb on + strand, within CA264_18180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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4,225,439 - CA264_18165 0.83 -0.5
4,225,538 - -0.1
4,225,612 - -2.0
4,225,631 - +0.7
4,225,631 - +0.4
4,225,725 + +0.0
4,225,725 + -0.8
4,225,791 + -0.3
4,225,798 + -0.0
4,225,798 + +0.2
4,225,799 - +0.5
4,225,799 - +0.1
4,225,803 + +0.3
4,225,811 + -1.9
4,225,852 + -1.6
4,225,853 - -1.0
4,226,386 + -0.8
4,226,386 + +0.2
4,226,798 - -1.4
4,226,801 + +0.5
4,226,801 + +0.5
4,226,838 - -0.2
4,226,852 + +0.0
4,226,940 - -0.6
4,226,940 - -0.5
4,226,943 + -1.8
4,226,943 + -0.9
4,226,944 - +0.7
4,226,946 - +0.2
4,226,946 - -0.5
4,226,964 + -0.9
4,226,982 + +0.3
4,226,983 - -0.3
4,226,983 - -0.6
4,226,983 - -0.4
4,227,032 + +1.2
4,227,032 + -0.3
4,227,222 + CA264_18180 0.11 +0.6
4,227,223 - CA264_18180 0.11 -0.4
4,227,319 - CA264_18180 0.17 -1.7
4,227,319 - CA264_18180 0.17 -0.5
4,227,386 - CA264_18180 0.21 +0.2
4,227,415 - CA264_18180 0.23 +0.3
4,227,459 - CA264_18180 0.26 -0.7
4,227,461 - CA264_18180 0.26 -0.6
4,227,568 + CA264_18180 0.32 -0.1
4,227,661 - CA264_18180 0.38 +0.3
4,227,661 - CA264_18180 0.38 +0.1
4,227,662 + CA264_18180 0.38 +2.2
4,227,663 - CA264_18180 0.38 -0.3
4,227,672 - CA264_18180 0.38 +0.8
4,227,775 + CA264_18180 0.45 -0.6

Or see this region's nucleotide sequence