Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18100

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18090 and CA264_18095 are separated by 88 nucleotidesCA264_18095 and CA264_18100 are separated by 60 nucleotidesCA264_18100 and CA264_18105 are separated by 123 nucleotidesCA264_18105 and CA264_18110 are separated by 89 nucleotides CA264_18090: CA264_18090 - DUF305 domain-containing protein, at 4,207,174 to 4,207,755 _18090 CA264_18095: CA264_18095 - hypothetical protein, at 4,207,844 to 4,208,419 _18095 CA264_18100: CA264_18100 - ABC-ATPase UvrA, at 4,208,480 to 4,211,395 _18100 CA264_18105: CA264_18105 - hypothetical protein, at 4,211,519 to 4,211,902 _18105 CA264_18110: CA264_18110 - hypothetical protein, at 4,211,992 to 4,212,420 _18110 Position (kb) 4208 4209 4210 4211 4212Strain fitness (log2 ratio) -2 -1 0 1 2at 4207.582 kb on + strand, within CA264_18090at 4207.583 kb on - strand, within CA264_18090at 4207.649 kb on + strand, within CA264_18090at 4207.650 kb on - strand, within CA264_18090at 4207.650 kb on - strand, within CA264_18090at 4207.753 kb on + strandat 4207.754 kb on - strandat 4207.754 kb on - strandat 4207.775 kb on + strandat 4207.776 kb on - strandat 4207.779 kb on + strandat 4207.784 kb on + strandat 4207.795 kb on + strandat 4207.796 kb on - strandat 4207.818 kb on + strandat 4207.881 kb on + strandat 4207.948 kb on - strand, within CA264_18095at 4208.032 kb on - strand, within CA264_18095at 4208.032 kb on - strand, within CA264_18095at 4208.230 kb on + strand, within CA264_18095at 4208.230 kb on + strand, within CA264_18095at 4208.272 kb on - strand, within CA264_18095at 4208.339 kb on + strand, within CA264_18095at 4208.340 kb on - strand, within CA264_18095at 4208.414 kb on - strandat 4208.511 kb on + strandat 4208.635 kb on + strandat 4208.647 kb on - strandat 4208.687 kb on - strandat 4208.690 kb on + strandat 4208.691 kb on - strandat 4208.711 kb on - strandat 4208.721 kb on - strandat 4208.784 kb on + strand, within CA264_18100at 4208.785 kb on - strand, within CA264_18100at 4208.864 kb on - strand, within CA264_18100at 4209.092 kb on + strand, within CA264_18100at 4209.287 kb on + strand, within CA264_18100at 4209.288 kb on - strand, within CA264_18100at 4209.288 kb on - strand, within CA264_18100at 4209.290 kb on + strand, within CA264_18100at 4209.291 kb on - strand, within CA264_18100at 4209.379 kb on - strand, within CA264_18100at 4209.785 kb on + strand, within CA264_18100at 4209.786 kb on - strand, within CA264_18100at 4209.787 kb on + strand, within CA264_18100at 4209.787 kb on + strand, within CA264_18100at 4209.802 kb on + strand, within CA264_18100at 4209.802 kb on + strand, within CA264_18100at 4209.806 kb on - strand, within CA264_18100at 4209.806 kb on - strand, within CA264_18100at 4209.807 kb on + strand, within CA264_18100at 4209.807 kb on + strand, within CA264_18100at 4209.808 kb on - strand, within CA264_18100at 4210.152 kb on - strand, within CA264_18100at 4210.230 kb on + strand, within CA264_18100at 4210.230 kb on + strand, within CA264_18100at 4210.231 kb on - strand, within CA264_18100at 4210.276 kb on - strand, within CA264_18100at 4210.276 kb on - strand, within CA264_18100at 4210.514 kb on - strand, within CA264_18100at 4210.734 kb on + strand, within CA264_18100at 4210.957 kb on - strand, within CA264_18100at 4210.957 kb on - strand, within CA264_18100at 4210.960 kb on + strand, within CA264_18100at 4210.960 kb on + strand, within CA264_18100at 4210.961 kb on - strand, within CA264_18100at 4210.961 kb on - strand, within CA264_18100at 4210.961 kb on - strand, within CA264_18100at 4210.997 kb on - strand, within CA264_18100at 4211.181 kb on + strandat 4211.182 kb on - strandat 4211.182 kb on - strandat 4211.275 kb on + strandat 4211.276 kb on - strandat 4211.276 kb on - strandat 4211.276 kb on - strandat 4211.299 kb on - strandat 4211.387 kb on + strandat 4211.631 kb on + strand, within CA264_18105at 4211.647 kb on - strand, within CA264_18105at 4211.700 kb on + strand, within CA264_18105at 4211.702 kb on + strand, within CA264_18105at 4211.702 kb on + strand, within CA264_18105at 4211.703 kb on - strand, within CA264_18105at 4211.827 kb on + strand, within CA264_18105at 4211.849 kb on + strand, within CA264_18105at 4212.230 kb on + strand, within CA264_18110at 4212.332 kb on - strand, within CA264_18110at 4212.332 kb on - strand, within CA264_18110at 4212.376 kb on - strand, within CA264_18110at 4212.386 kb on - strandat 4212.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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4,207,582 + CA264_18090 0.70 +0.0
4,207,583 - CA264_18090 0.70 +0.5
4,207,649 + CA264_18090 0.82 +0.3
4,207,650 - CA264_18090 0.82 +0.7
4,207,650 - CA264_18090 0.82 -1.2
4,207,753 + -0.3
4,207,754 - -0.6
4,207,754 - -0.2
4,207,775 + +0.1
4,207,776 - +0.3
4,207,779 + +0.6
4,207,784 + +0.1
4,207,795 + -0.6
4,207,796 - -0.3
4,207,818 + -0.3
4,207,881 + -0.5
4,207,948 - CA264_18095 0.18 -0.7
4,208,032 - CA264_18095 0.33 -0.6
4,208,032 - CA264_18095 0.33 -0.1
4,208,230 + CA264_18095 0.67 -0.2
4,208,230 + CA264_18095 0.67 +1.6
4,208,272 - CA264_18095 0.74 -0.5
4,208,339 + CA264_18095 0.86 -0.6
4,208,340 - CA264_18095 0.86 -0.9
4,208,414 - -0.2
4,208,511 + -0.5
4,208,635 + -0.6
4,208,647 - -1.7
4,208,687 - +1.4
4,208,690 + -0.9
4,208,691 - -0.5
4,208,711 - -1.3
4,208,721 - +0.1
4,208,784 + CA264_18100 0.10 +0.5
4,208,785 - CA264_18100 0.10 -0.3
4,208,864 - CA264_18100 0.13 +0.7
4,209,092 + CA264_18100 0.21 +1.2
4,209,287 + CA264_18100 0.28 -0.2
4,209,288 - CA264_18100 0.28 -0.4
4,209,288 - CA264_18100 0.28 -0.9
4,209,290 + CA264_18100 0.28 -0.6
4,209,291 - CA264_18100 0.28 -1.4
4,209,379 - CA264_18100 0.31 -0.5
4,209,785 + CA264_18100 0.45 +0.4
4,209,786 - CA264_18100 0.45 -1.2
4,209,787 + CA264_18100 0.45 -0.9
4,209,787 + CA264_18100 0.45 -0.7
4,209,802 + CA264_18100 0.45 -1.0
4,209,802 + CA264_18100 0.45 -0.4
4,209,806 - CA264_18100 0.45 +1.8
4,209,806 - CA264_18100 0.45 +0.5
4,209,807 + CA264_18100 0.46 -0.4
4,209,807 + CA264_18100 0.46 +0.4
4,209,808 - CA264_18100 0.46 -0.4
4,210,152 - CA264_18100 0.57 -0.5
4,210,230 + CA264_18100 0.60 +0.9
4,210,230 + CA264_18100 0.60 +0.5
4,210,231 - CA264_18100 0.60 -1.3
4,210,276 - CA264_18100 0.62 -1.2
4,210,276 - CA264_18100 0.62 -0.9
4,210,514 - CA264_18100 0.70 -0.3
4,210,734 + CA264_18100 0.77 -1.2
4,210,957 - CA264_18100 0.85 +1.5
4,210,957 - CA264_18100 0.85 -0.4
4,210,960 + CA264_18100 0.85 -2.0
4,210,960 + CA264_18100 0.85 -1.2
4,210,961 - CA264_18100 0.85 -0.3
4,210,961 - CA264_18100 0.85 -0.2
4,210,961 - CA264_18100 0.85 +0.7
4,210,997 - CA264_18100 0.86 +1.4
4,211,181 + -0.8
4,211,182 - -0.5
4,211,182 - -0.1
4,211,275 + -1.0
4,211,276 - -1.0
4,211,276 - -0.3
4,211,276 - +0.1
4,211,299 - -0.8
4,211,387 + -0.9
4,211,631 + CA264_18105 0.29 -1.5
4,211,647 - CA264_18105 0.33 -0.3
4,211,700 + CA264_18105 0.47 -0.4
4,211,702 + CA264_18105 0.48 +0.6
4,211,702 + CA264_18105 0.48 +0.8
4,211,703 - CA264_18105 0.48 -0.5
4,211,827 + CA264_18105 0.80 -0.7
4,211,849 + CA264_18105 0.86 -0.6
4,212,230 + CA264_18110 0.55 -0.4
4,212,332 - CA264_18110 0.79 +0.1
4,212,332 - CA264_18110 0.79 -0.0
4,212,376 - CA264_18110 0.90 -0.6
4,212,386 - -0.5
4,212,386 - -0.2

Or see this region's nucleotide sequence