Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18025

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18015 and CA264_18020 are separated by 155 nucleotidesCA264_18020 and CA264_18025 are separated by 43 nucleotidesCA264_18025 and CA264_18030 are separated by 155 nucleotides CA264_18015: CA264_18015 - kynureninase, at 4,188,915 to 4,190,195 _18015 CA264_18020: CA264_18020 - ABC transporter permease, at 4,190,351 to 4,190,845 _18020 CA264_18025: CA264_18025 - sodium/alanine symporter, at 4,190,889 to 4,192,283 _18025 CA264_18030: CA264_18030 - cation transporter, at 4,192,439 to 4,193,710 _18030 Position (kb) 4190 4191 4192 4193Strain fitness (log2 ratio) -1 0 1at 4190.075 kb on + strandat 4190.118 kb on - strandat 4190.146 kb on + strandat 4190.147 kb on - strandat 4190.147 kb on - strandat 4190.147 kb on - strandat 4190.147 kb on - strandat 4190.147 kb on - strandat 4190.189 kb on - strandat 4190.194 kb on - strandat 4190.233 kb on + strandat 4190.298 kb on + strandat 4190.340 kb on + strandat 4190.342 kb on + strandat 4190.343 kb on - strandat 4190.382 kb on - strandat 4190.396 kb on + strandat 4190.397 kb on - strandat 4190.460 kb on + strand, within CA264_18020at 4190.763 kb on + strand, within CA264_18020at 4190.764 kb on - strand, within CA264_18020at 4190.764 kb on - strand, within CA264_18020at 4190.807 kb on - strandat 4190.884 kb on - strandat 4190.892 kb on + strandat 4190.892 kb on + strandat 4190.893 kb on - strandat 4190.893 kb on - strandat 4190.941 kb on + strandat 4191.017 kb on - strandat 4191.029 kb on + strand, within CA264_18025at 4191.040 kb on - strand, within CA264_18025at 4191.040 kb on - strand, within CA264_18025at 4191.050 kb on + strand, within CA264_18025at 4191.085 kb on + strand, within CA264_18025at 4191.091 kb on + strand, within CA264_18025at 4191.092 kb on - strand, within CA264_18025at 4191.098 kb on - strand, within CA264_18025at 4191.098 kb on - strand, within CA264_18025at 4191.100 kb on + strand, within CA264_18025at 4191.151 kb on + strand, within CA264_18025at 4191.158 kb on - strand, within CA264_18025at 4191.208 kb on + strand, within CA264_18025at 4191.208 kb on + strand, within CA264_18025at 4191.209 kb on - strand, within CA264_18025at 4191.209 kb on - strand, within CA264_18025at 4191.209 kb on - strand, within CA264_18025at 4191.261 kb on + strand, within CA264_18025at 4191.317 kb on + strand, within CA264_18025at 4191.549 kb on + strand, within CA264_18025at 4191.549 kb on + strand, within CA264_18025at 4191.549 kb on + strand, within CA264_18025at 4191.577 kb on + strand, within CA264_18025at 4191.577 kb on + strand, within CA264_18025at 4191.578 kb on - strand, within CA264_18025at 4191.578 kb on - strand, within CA264_18025at 4191.647 kb on + strand, within CA264_18025at 4191.877 kb on + strand, within CA264_18025at 4191.895 kb on - strand, within CA264_18025at 4191.923 kb on - strand, within CA264_18025at 4191.926 kb on + strand, within CA264_18025at 4192.096 kb on - strand, within CA264_18025at 4192.097 kb on + strand, within CA264_18025at 4192.123 kb on + strand, within CA264_18025at 4192.124 kb on - strand, within CA264_18025at 4192.142 kb on + strand, within CA264_18025at 4192.310 kb on + strandat 4192.316 kb on + strandat 4192.317 kb on - strandat 4192.318 kb on + strandat 4192.319 kb on - strandat 4192.337 kb on - strandat 4192.365 kb on - strandat 4192.373 kb on + strandat 4192.374 kb on - strandat 4192.376 kb on - strandat 4192.438 kb on + strandat 4192.438 kb on + strandat 4192.438 kb on + strandat 4192.438 kb on + strandat 4192.439 kb on - strandat 4192.439 kb on - strandat 4192.448 kb on + strandat 4192.448 kb on + strandat 4192.449 kb on - strandat 4192.449 kb on - strandat 4192.450 kb on + strandat 4192.451 kb on - strandat 4192.451 kb on - strandat 4192.452 kb on + strandat 4192.452 kb on + strandat 4192.513 kb on + strandat 4192.520 kb on - strandat 4192.520 kb on - strandat 4192.542 kb on + strandat 4192.554 kb on + strandat 4192.568 kb on + strand, within CA264_18030at 4192.569 kb on - strand, within CA264_18030at 4192.569 kb on - strand, within CA264_18030at 4192.581 kb on + strand, within CA264_18030at 4192.582 kb on - strand, within CA264_18030at 4192.619 kb on + strand, within CA264_18030at 4192.620 kb on - strand, within CA264_18030at 4192.620 kb on - strand, within CA264_18030at 4192.620 kb on - strand, within CA264_18030at 4192.692 kb on + strand, within CA264_18030at 4192.692 kb on + strand, within CA264_18030at 4192.693 kb on - strand, within CA264_18030at 4192.735 kb on + strand, within CA264_18030at 4192.736 kb on - strand, within CA264_18030at 4192.828 kb on - strand, within CA264_18030at 4193.040 kb on - strand, within CA264_18030at 4193.093 kb on + strand, within CA264_18030at 4193.267 kb on + strand, within CA264_18030at 4193.268 kb on - strand, within CA264_18030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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4,190,075 + -1.2
4,190,118 - -0.2
4,190,146 + -0.6
4,190,147 - -0.3
4,190,147 - -0.3
4,190,147 - +0.5
4,190,147 - +0.8
4,190,147 - +0.6
4,190,189 - +0.2
4,190,194 - -0.2
4,190,233 + +1.2
4,190,298 + -1.0
4,190,340 + +0.5
4,190,342 + +0.1
4,190,343 - -0.1
4,190,382 - +1.5
4,190,396 + -0.5
4,190,397 - +0.1
4,190,460 + CA264_18020 0.22 -0.3
4,190,763 + CA264_18020 0.83 -0.5
4,190,764 - CA264_18020 0.83 +0.6
4,190,764 - CA264_18020 0.83 +0.7
4,190,807 - +1.4
4,190,884 - -0.2
4,190,892 + -1.6
4,190,892 + +0.1
4,190,893 - -0.3
4,190,893 - -0.3
4,190,941 + -0.4
4,191,017 - +0.3
4,191,029 + CA264_18025 0.10 +0.3
4,191,040 - CA264_18025 0.11 -0.2
4,191,040 - CA264_18025 0.11 +1.1
4,191,050 + CA264_18025 0.12 +1.4
4,191,085 + CA264_18025 0.14 -1.1
4,191,091 + CA264_18025 0.14 +0.8
4,191,092 - CA264_18025 0.15 +0.5
4,191,098 - CA264_18025 0.15 -1.1
4,191,098 - CA264_18025 0.15 -0.6
4,191,100 + CA264_18025 0.15 -0.2
4,191,151 + CA264_18025 0.19 -1.1
4,191,158 - CA264_18025 0.19 -0.6
4,191,208 + CA264_18025 0.23 -0.4
4,191,208 + CA264_18025 0.23 -0.2
4,191,209 - CA264_18025 0.23 +0.1
4,191,209 - CA264_18025 0.23 -0.3
4,191,209 - CA264_18025 0.23 -0.1
4,191,261 + CA264_18025 0.27 -0.3
4,191,317 + CA264_18025 0.31 -0.1
4,191,549 + CA264_18025 0.47 -1.0
4,191,549 + CA264_18025 0.47 -0.3
4,191,549 + CA264_18025 0.47 +0.3
4,191,577 + CA264_18025 0.49 +0.3
4,191,577 + CA264_18025 0.49 +0.0
4,191,578 - CA264_18025 0.49 +0.5
4,191,578 - CA264_18025 0.49 -0.9
4,191,647 + CA264_18025 0.54 -0.3
4,191,877 + CA264_18025 0.71 -0.1
4,191,895 - CA264_18025 0.72 +1.0
4,191,923 - CA264_18025 0.74 -0.5
4,191,926 + CA264_18025 0.74 -0.4
4,192,096 - CA264_18025 0.87 -0.6
4,192,097 + CA264_18025 0.87 -0.2
4,192,123 + CA264_18025 0.88 +0.8
4,192,124 - CA264_18025 0.89 -0.5
4,192,142 + CA264_18025 0.90 +0.3
4,192,310 + +1.2
4,192,316 + +0.8
4,192,317 - -0.2
4,192,318 + +0.7
4,192,319 - +0.4
4,192,337 - +0.7
4,192,365 - +0.1
4,192,373 + -1.4
4,192,374 - +0.9
4,192,376 - +1.2
4,192,438 + -1.7
4,192,438 + +0.7
4,192,438 + -0.3
4,192,438 + +0.4
4,192,439 - +0.4
4,192,439 - -0.2
4,192,448 + +0.0
4,192,448 + +0.6
4,192,449 - -0.1
4,192,449 - +0.4
4,192,450 + +0.2
4,192,451 - +0.4
4,192,451 - +0.7
4,192,452 + -0.6
4,192,452 + +0.4
4,192,513 + +1.0
4,192,520 - +0.6
4,192,520 - +0.7
4,192,542 + +0.4
4,192,554 + +0.3
4,192,568 + CA264_18030 0.10 +0.4
4,192,569 - CA264_18030 0.10 +0.7
4,192,569 - CA264_18030 0.10 +0.2
4,192,581 + CA264_18030 0.11 +0.1
4,192,582 - CA264_18030 0.11 +1.4
4,192,619 + CA264_18030 0.14 -0.2
4,192,620 - CA264_18030 0.14 -0.5
4,192,620 - CA264_18030 0.14 -0.5
4,192,620 - CA264_18030 0.14 +1.1
4,192,692 + CA264_18030 0.20 +0.8
4,192,692 + CA264_18030 0.20 -0.2
4,192,693 - CA264_18030 0.20 +0.7
4,192,735 + CA264_18030 0.23 +0.6
4,192,736 - CA264_18030 0.23 +0.4
4,192,828 - CA264_18030 0.31 +0.2
4,193,040 - CA264_18030 0.47 -0.7
4,193,093 + CA264_18030 0.51 +0.8
4,193,267 + CA264_18030 0.65 +0.3
4,193,268 - CA264_18030 0.65 +0.2

Or see this region's nucleotide sequence