Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17495

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17485 and CA264_17490 are separated by 158 nucleotidesCA264_17490 and CA264_17495 are separated by 156 nucleotidesCA264_17495 and CA264_17500 are separated by 360 nucleotidesCA264_17500 and CA264_17505 are separated by 12 nucleotides CA264_17485: CA264_17485 - cytochrome C biosynthesis protein, at 4,074,754 to 4,075,473 _17485 CA264_17490: CA264_17490 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,075,632 to 4,076,108 _17490 CA264_17495: CA264_17495 - hypothetical protein, at 4,076,265 to 4,076,855 _17495 CA264_17500: CA264_17500 - molecular chaperone DnaK, at 4,077,216 to 4,077,605 _17500 CA264_17505: CA264_17505 - SMC-Scp complex subunit ScpB, at 4,077,618 to 4,078,181 _17505 Position (kb) 4076 4077Strain fitness (log2 ratio) -3 -2 -1 0 1at 4075.390 kb on + strand, within CA264_17485at 4075.427 kb on - strandat 4075.427 kb on - strandat 4075.429 kb on - strandat 4075.472 kb on - strandat 4075.493 kb on + strandat 4075.494 kb on - strandat 4075.494 kb on - strandat 4075.578 kb on - strandat 4075.646 kb on - strandat 4076.136 kb on + strandat 4076.140 kb on + strandat 4076.184 kb on - strandat 4076.364 kb on - strand, within CA264_17495at 4076.369 kb on + strand, within CA264_17495at 4076.485 kb on + strand, within CA264_17495at 4076.485 kb on + strand, within CA264_17495at 4076.512 kb on - strand, within CA264_17495at 4076.522 kb on + strand, within CA264_17495at 4076.525 kb on - strand, within CA264_17495at 4076.590 kb on + strand, within CA264_17495at 4076.590 kb on + strand, within CA264_17495at 4076.590 kb on + strand, within CA264_17495at 4076.593 kb on + strand, within CA264_17495at 4076.639 kb on + strand, within CA264_17495at 4076.639 kb on + strand, within CA264_17495at 4076.640 kb on - strand, within CA264_17495at 4076.640 kb on - strand, within CA264_17495at 4076.641 kb on + strand, within CA264_17495at 4076.642 kb on - strand, within CA264_17495at 4076.642 kb on - strand, within CA264_17495at 4076.838 kb on + strandat 4076.855 kb on + strandat 4076.867 kb on - strandat 4076.873 kb on + strandat 4076.878 kb on - strandat 4076.917 kb on + strandat 4076.954 kb on - strandat 4076.961 kb on - strandat 4076.961 kb on - strandat 4076.989 kb on - strandat 4077.002 kb on - strandat 4077.067 kb on + strandat 4077.103 kb on - strandat 4077.107 kb on + strandat 4077.108 kb on - strandat 4077.112 kb on - strandat 4077.112 kb on - strandat 4077.112 kb on - strandat 4077.127 kb on + strandat 4077.188 kb on - strandat 4077.204 kb on + strandat 4077.204 kb on + strandat 4077.205 kb on - strandat 4077.208 kb on - strandat 4077.214 kb on + strandat 4077.215 kb on - strandat 4077.215 kb on - strandat 4077.215 kb on - strandat 4077.221 kb on + strandat 4077.314 kb on - strand, within CA264_17500at 4077.502 kb on - strand, within CA264_17500at 4077.517 kb on + strand, within CA264_17500at 4077.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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4,075,390 + CA264_17485 0.88 -1.4
4,075,427 - -2.4
4,075,427 - -0.3
4,075,429 - -2.8
4,075,472 - +0.3
4,075,493 + -0.2
4,075,494 - -1.4
4,075,494 - -0.1
4,075,578 - -1.1
4,075,646 - +1.0
4,076,136 + +0.2
4,076,140 + +1.3
4,076,184 - -1.1
4,076,364 - CA264_17495 0.17 -1.3
4,076,369 + CA264_17495 0.18 +0.2
4,076,485 + CA264_17495 0.37 +1.2
4,076,485 + CA264_17495 0.37 +0.1
4,076,512 - CA264_17495 0.42 -0.7
4,076,522 + CA264_17495 0.43 -0.5
4,076,525 - CA264_17495 0.44 -0.0
4,076,590 + CA264_17495 0.55 +0.4
4,076,590 + CA264_17495 0.55 -0.4
4,076,590 + CA264_17495 0.55 -0.9
4,076,593 + CA264_17495 0.55 +0.7
4,076,639 + CA264_17495 0.63 -0.3
4,076,639 + CA264_17495 0.63 -1.1
4,076,640 - CA264_17495 0.63 +0.5
4,076,640 - CA264_17495 0.63 -0.4
4,076,641 + CA264_17495 0.64 +0.4
4,076,642 - CA264_17495 0.64 +0.2
4,076,642 - CA264_17495 0.64 -0.1
4,076,838 + +0.6
4,076,855 + -0.3
4,076,867 - -0.6
4,076,873 + +1.0
4,076,878 - -0.4
4,076,917 + +0.6
4,076,954 - +0.7
4,076,961 - -0.0
4,076,961 - -0.1
4,076,989 - -0.2
4,077,002 - -0.1
4,077,067 + +0.2
4,077,103 - -1.1
4,077,107 + -0.5
4,077,108 - -0.1
4,077,112 - -0.6
4,077,112 - -0.3
4,077,112 - +1.0
4,077,127 + +0.0
4,077,188 - -0.8
4,077,204 + +0.0
4,077,204 + -0.5
4,077,205 - +0.6
4,077,208 - +0.2
4,077,214 + +0.2
4,077,215 - -0.4
4,077,215 - +0.0
4,077,215 - -0.2
4,077,221 + -0.4
4,077,314 - CA264_17500 0.25 -0.4
4,077,502 - CA264_17500 0.73 -0.2
4,077,517 + CA264_17500 0.77 -1.9
4,077,596 + -0.1

Or see this region's nucleotide sequence