Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15475 and CA264_15480 are separated by 36 nucleotides CA264_15480 and CA264_15485 are separated by 70 nucleotides CA264_15485 and CA264_15490 are separated by 74 nucleotides CA264_15490 and CA264_15495 are separated by 88 nucleotides CA264_15495 and CA264_15500 are separated by 81 nucleotides
CA264_15475: CA264_15475 - hypothetical protein, at 3,626,000 to 3,627,520
_15475
CA264_15480: CA264_15480 - hypothetical protein, at 3,627,557 to 3,627,919
_15480
CA264_15485: CA264_15485 - hypothetical protein, at 3,627,990 to 3,628,436
_15485
CA264_15490: CA264_15490 - hypothetical protein, at 3,628,511 to 3,629,599
_15490
CA264_15495: CA264_15495 - peptide-methionine (S)-S-oxide reductase, at 3,629,688 to 3,630,185
_15495
CA264_15500: CA264_15500 - hypothetical protein, at 3,630,267 to 3,630,806
_15500
Position (kb)
3628
3629
3630 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3627.620 kb on + strand, within CA264_15480 at 3627.620 kb on + strand, within CA264_15480 at 3627.620 kb on + strand, within CA264_15480 at 3627.620 kb on + strand, within CA264_15480 at 3627.621 kb on - strand, within CA264_15480 at 3627.666 kb on - strand, within CA264_15480 at 3627.666 kb on - strand, within CA264_15480 at 3627.666 kb on - strand, within CA264_15480 at 3627.673 kb on + strand, within CA264_15480 at 3627.674 kb on - strand, within CA264_15480 at 3627.674 kb on - strand, within CA264_15480 at 3627.886 kb on + strand at 3627.917 kb on + strand at 3627.918 kb on - strand at 3628.021 kb on - strand at 3628.054 kb on + strand, within CA264_15485 at 3628.129 kb on + strand, within CA264_15485 at 3628.130 kb on - strand, within CA264_15485 at 3628.131 kb on + strand, within CA264_15485 at 3628.250 kb on + strand, within CA264_15485 at 3628.250 kb on + strand, within CA264_15485 at 3628.251 kb on - strand, within CA264_15485 at 3628.299 kb on + strand, within CA264_15485 at 3628.425 kb on + strand at 3628.425 kb on + strand at 3628.426 kb on - strand at 3628.436 kb on + strand at 3628.442 kb on + strand at 3628.443 kb on - strand at 3628.443 kb on - strand at 3628.444 kb on + strand at 3628.470 kb on + strand at 3628.476 kb on + strand at 3628.477 kb on - strand at 3628.477 kb on - strand at 3628.477 kb on - strand at 3628.521 kb on - strand at 3628.791 kb on + strand, within CA264_15490 at 3628.792 kb on - strand, within CA264_15490 at 3628.792 kb on - strand, within CA264_15490 at 3628.792 kb on - strand, within CA264_15490 at 3628.887 kb on - strand, within CA264_15490 at 3628.974 kb on + strand, within CA264_15490 at 3628.975 kb on - strand, within CA264_15490 at 3628.975 kb on - strand, within CA264_15490 at 3628.993 kb on + strand, within CA264_15490 at 3629.041 kb on + strand, within CA264_15490 at 3629.153 kb on + strand, within CA264_15490 at 3629.303 kb on - strand, within CA264_15490 at 3629.332 kb on - strand, within CA264_15490 at 3629.357 kb on + strand, within CA264_15490 at 3629.357 kb on + strand, within CA264_15490 at 3629.357 kb on + strand, within CA264_15490 at 3629.358 kb on - strand, within CA264_15490 at 3629.358 kb on - strand, within CA264_15490 at 3629.358 kb on - strand, within CA264_15490 at 3629.358 kb on - strand, within CA264_15490 at 3629.358 kb on - strand, within CA264_15490 at 3629.363 kb on + strand, within CA264_15490 at 3629.500 kb on + strand at 3629.500 kb on + strand at 3629.582 kb on + strand at 3629.584 kb on + strand at 3629.602 kb on + strand at 3629.633 kb on + strand at 3629.640 kb on + strand at 3629.641 kb on - strand at 3629.651 kb on + strand at 3629.652 kb on - strand at 3629.652 kb on - strand at 3629.660 kb on + strand at 3629.662 kb on + strand at 3629.662 kb on + strand at 3629.662 kb on + strand at 3629.662 kb on + strand at 3629.663 kb on - strand at 3629.663 kb on - strand at 3629.663 kb on - strand at 3629.664 kb on + strand at 3629.664 kb on + strand at 3629.665 kb on - strand at 3629.665 kb on - strand at 3629.665 kb on - strand at 3629.680 kb on + strand at 3629.680 kb on + strand at 3629.681 kb on - strand at 3629.682 kb on + strand at 3629.782 kb on + strand, within CA264_15495 at 3629.783 kb on - strand, within CA264_15495 at 3629.802 kb on + strand, within CA264_15495 at 3629.803 kb on - strand, within CA264_15495 at 3629.803 kb on - strand, within CA264_15495 at 3629.832 kb on + strand, within CA264_15495 at 3629.842 kb on + strand, within CA264_15495 at 3629.842 kb on + strand, within CA264_15495 at 3629.842 kb on + strand, within CA264_15495 at 3629.842 kb on + strand, within CA264_15495 at 3629.842 kb on + strand, within CA264_15495 at 3629.843 kb on - strand, within CA264_15495 at 3629.843 kb on - strand, within CA264_15495 at 3629.843 kb on - strand, within CA264_15495 at 3629.927 kb on - strand, within CA264_15495 at 3629.948 kb on + strand, within CA264_15495 at 3630.183 kb on + strand at 3630.187 kb on + strand at 3630.188 kb on - strand at 3630.188 kb on - strand at 3630.188 kb on - strand at 3630.434 kb on + strand, within CA264_15500 at 3630.434 kb on + strand, within CA264_15500 at 3630.434 kb on + strand, within CA264_15500 at 3630.434 kb on + strand, within CA264_15500 at 3630.435 kb on - strand, within CA264_15500 at 3630.435 kb on - strand, within CA264_15500 at 3630.481 kb on - strand, within CA264_15500 at 3630.543 kb on + strand, within CA264_15500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 3,627,620 + CA264_15480 0.17 -0.9 3,627,620 + CA264_15480 0.17 +1.2 3,627,620 + CA264_15480 0.17 +0.5 3,627,620 + CA264_15480 0.17 -0.8 3,627,621 - CA264_15480 0.18 +0.1 3,627,666 - CA264_15480 0.30 +0.1 3,627,666 - CA264_15480 0.30 +0.7 3,627,666 - CA264_15480 0.30 -1.2 3,627,673 + CA264_15480 0.32 +0.4 3,627,674 - CA264_15480 0.32 -0.6 3,627,674 - CA264_15480 0.32 +0.3 3,627,886 + -0.9 3,627,917 + -1.7 3,627,918 - +0.8 3,628,021 - +0.7 3,628,054 + CA264_15485 0.14 -0.2 3,628,129 + CA264_15485 0.31 +1.2 3,628,130 - CA264_15485 0.31 -0.1 3,628,131 + CA264_15485 0.32 -0.1 3,628,250 + CA264_15485 0.58 +1.8 3,628,250 + CA264_15485 0.58 +0.3 3,628,251 - CA264_15485 0.58 -0.8 3,628,299 + CA264_15485 0.69 +0.3 3,628,425 + -0.2 3,628,425 + -1.1 3,628,426 - -0.2 3,628,436 + +0.2 3,628,442 + +0.4 3,628,443 - -0.5 3,628,443 - +0.5 3,628,444 + +0.1 3,628,470 + +1.2 3,628,476 + -0.2 3,628,477 - -0.0 3,628,477 - +0.4 3,628,477 - -0.2 3,628,521 - -0.3 3,628,791 + CA264_15490 0.26 -0.5 3,628,792 - CA264_15490 0.26 +0.3 3,628,792 - CA264_15490 0.26 +0.3 3,628,792 - CA264_15490 0.26 -1.5 3,628,887 - CA264_15490 0.35 +0.6 3,628,974 + CA264_15490 0.43 +0.5 3,628,975 - CA264_15490 0.43 +0.2 3,628,975 - CA264_15490 0.43 +1.0 3,628,993 + CA264_15490 0.44 -0.8 3,629,041 + CA264_15490 0.49 -0.7 3,629,153 + CA264_15490 0.59 +0.7 3,629,303 - CA264_15490 0.73 +1.4 3,629,332 - CA264_15490 0.75 -0.4 3,629,357 + CA264_15490 0.78 +0.2 3,629,357 + CA264_15490 0.78 -0.4 3,629,357 + CA264_15490 0.78 -0.3 3,629,358 - CA264_15490 0.78 -0.4 3,629,358 - CA264_15490 0.78 +0.7 3,629,358 - CA264_15490 0.78 +1.9 3,629,358 - CA264_15490 0.78 +0.0 3,629,358 - CA264_15490 0.78 -0.6 3,629,363 + CA264_15490 0.78 +0.5 3,629,500 + -0.4 3,629,500 + +1.6 3,629,582 + +0.7 3,629,584 + -0.2 3,629,602 + +0.7 3,629,633 + +0.5 3,629,640 + +0.7 3,629,641 - -0.5 3,629,651 + -0.5 3,629,652 - +0.5 3,629,652 - -0.2 3,629,660 + -0.5 3,629,662 + +0.3 3,629,662 + +0.1 3,629,662 + -0.8 3,629,662 + +0.2 3,629,663 - +0.8 3,629,663 - +0.2 3,629,663 - +0.1 3,629,664 + -0.8 3,629,664 + -0.5 3,629,665 - +0.2 3,629,665 - -0.5 3,629,665 - +0.2 3,629,680 + -0.2 3,629,680 + +0.3 3,629,681 - -0.9 3,629,682 + -0.1 3,629,782 + CA264_15495 0.19 -0.4 3,629,783 - CA264_15495 0.19 -2.1 3,629,802 + CA264_15495 0.23 -0.1 3,629,803 - CA264_15495 0.23 +0.0 3,629,803 - CA264_15495 0.23 -0.4 3,629,832 + CA264_15495 0.29 +0.6 3,629,842 + CA264_15495 0.31 +0.4 3,629,842 + CA264_15495 0.31 -0.4 3,629,842 + CA264_15495 0.31 +0.5 3,629,842 + CA264_15495 0.31 -0.4 3,629,842 + CA264_15495 0.31 +0.2 3,629,843 - CA264_15495 0.31 +0.0 3,629,843 - CA264_15495 0.31 -0.8 3,629,843 - CA264_15495 0.31 -1.1 3,629,927 - CA264_15495 0.48 -0.6 3,629,948 + CA264_15495 0.52 +0.1 3,630,183 + +0.2 3,630,187 + -0.0 3,630,188 - +0.5 3,630,188 - +1.2 3,630,188 - +0.5 3,630,434 + CA264_15500 0.31 -1.7 3,630,434 + CA264_15500 0.31 +1.0 3,630,434 + CA264_15500 0.31 -0.2 3,630,434 + CA264_15500 0.31 -0.7 3,630,435 - CA264_15500 0.31 +1.0 3,630,435 - CA264_15500 0.31 -0.1 3,630,481 - CA264_15500 0.40 -0.7 3,630,543 + CA264_15500 0.51 +0.0
Or see this region's nucleotide sequence