Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13645

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13640 and CA264_13645 are separated by 46 nucleotidesCA264_13645 and CA264_13650 are separated by 260 nucleotidesCA264_13650 and CA264_13655 are separated by 247 nucleotides CA264_13640: CA264_13640 - hypothetical protein, at 3,188,839 to 3,190,818 _13640 CA264_13645: CA264_13645 - hypothetical protein, at 3,190,865 to 3,191,122 _13645 CA264_13650: CA264_13650 - hypothetical protein, at 3,191,383 to 3,191,694 _13650 CA264_13655: CA264_13655 - DNA metabolism protein, at 3,191,942 to 3,192,718 _13655 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -2 -1 0 1 2at 3189.929 kb on + strand, within CA264_13640at 3189.929 kb on + strand, within CA264_13640at 3189.945 kb on + strand, within CA264_13640at 3189.945 kb on + strand, within CA264_13640at 3189.988 kb on + strand, within CA264_13640at 3190.060 kb on + strand, within CA264_13640at 3190.066 kb on - strand, within CA264_13640at 3190.089 kb on + strand, within CA264_13640at 3190.094 kb on + strand, within CA264_13640at 3190.094 kb on + strand, within CA264_13640at 3190.095 kb on - strand, within CA264_13640at 3190.095 kb on - strand, within CA264_13640at 3190.095 kb on - strand, within CA264_13640at 3190.135 kb on + strand, within CA264_13640at 3190.135 kb on + strand, within CA264_13640at 3190.136 kb on - strand, within CA264_13640at 3190.136 kb on - strand, within CA264_13640at 3190.139 kb on + strand, within CA264_13640at 3190.139 kb on + strand, within CA264_13640at 3190.139 kb on + strand, within CA264_13640at 3190.139 kb on + strand, within CA264_13640at 3190.139 kb on + strand, within CA264_13640at 3190.140 kb on - strand, within CA264_13640at 3190.140 kb on - strand, within CA264_13640at 3190.140 kb on - strand, within CA264_13640at 3190.155 kb on + strand, within CA264_13640at 3190.205 kb on + strand, within CA264_13640at 3190.205 kb on + strand, within CA264_13640at 3190.205 kb on + strand, within CA264_13640at 3190.205 kb on + strand, within CA264_13640at 3190.206 kb on - strand, within CA264_13640at 3190.206 kb on - strand, within CA264_13640at 3190.217 kb on + strand, within CA264_13640at 3190.239 kb on - strand, within CA264_13640at 3190.247 kb on + strand, within CA264_13640at 3190.322 kb on + strand, within CA264_13640at 3190.338 kb on + strand, within CA264_13640at 3190.346 kb on + strand, within CA264_13640at 3190.346 kb on + strand, within CA264_13640at 3190.488 kb on + strand, within CA264_13640at 3190.489 kb on - strand, within CA264_13640at 3190.507 kb on + strand, within CA264_13640at 3190.538 kb on + strand, within CA264_13640at 3190.538 kb on + strand, within CA264_13640at 3190.543 kb on + strand, within CA264_13640at 3190.544 kb on - strand, within CA264_13640at 3190.546 kb on + strand, within CA264_13640at 3190.632 kb on - strandat 3190.694 kb on + strandat 3190.695 kb on - strandat 3190.707 kb on + strandat 3190.707 kb on + strandat 3190.828 kb on + strandat 3190.828 kb on + strandat 3190.829 kb on - strandat 3190.832 kb on + strandat 3190.833 kb on - strandat 3190.837 kb on - strandat 3190.837 kb on - strandat 3190.839 kb on + strandat 3190.839 kb on + strandat 3190.839 kb on + strandat 3190.839 kb on + strandat 3190.840 kb on - strandat 3190.840 kb on - strandat 3190.840 kb on - strandat 3190.844 kb on - strandat 3190.844 kb on - strandat 3190.844 kb on - strandat 3190.907 kb on - strand, within CA264_13645at 3190.913 kb on - strand, within CA264_13645at 3190.936 kb on + strand, within CA264_13645at 3190.937 kb on - strand, within CA264_13645at 3190.959 kb on - strand, within CA264_13645at 3191.032 kb on + strand, within CA264_13645at 3191.033 kb on - strand, within CA264_13645at 3191.105 kb on + strandat 3191.133 kb on - strandat 3191.137 kb on + strandat 3191.157 kb on + strandat 3191.217 kb on + strandat 3191.217 kb on + strandat 3191.217 kb on + strandat 3191.218 kb on - strandat 3191.221 kb on - strandat 3191.222 kb on + strandat 3191.223 kb on - strandat 3191.223 kb on - strandat 3191.226 kb on + strandat 3191.261 kb on + strandat 3191.323 kb on + strandat 3191.324 kb on - strandat 3191.362 kb on - strandat 3191.377 kb on - strandat 3191.390 kb on + strandat 3191.391 kb on - strandat 3191.520 kb on + strand, within CA264_13650at 3191.564 kb on - strand, within CA264_13650at 3191.585 kb on + strand, within CA264_13650at 3191.585 kb on + strand, within CA264_13650at 3191.717 kb on - strandat 3191.825 kb on - strandat 3191.839 kb on - strandat 3191.840 kb on + strandat 3191.840 kb on + strandat 3191.841 kb on - strandat 3191.841 kb on - strandat 3191.841 kb on - strandat 3191.843 kb on - strandat 3191.844 kb on + strandat 3191.844 kb on + strandat 3191.845 kb on - strandat 3191.845 kb on - strandat 3191.848 kb on + strandat 3191.848 kb on + strandat 3191.848 kb on + strandat 3191.856 kb on + strandat 3191.856 kb on + strandat 3191.858 kb on + strandat 3191.944 kb on - strandat 3191.944 kb on - strandat 3191.976 kb on + strandat 3192.037 kb on + strand, within CA264_13655at 3192.038 kb on - strand, within CA264_13655at 3192.080 kb on - strand, within CA264_13655

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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3,189,929 + CA264_13640 0.55 +0.2
3,189,929 + CA264_13640 0.55 -0.2
3,189,945 + CA264_13640 0.56 +0.4
3,189,945 + CA264_13640 0.56 +1.3
3,189,988 + CA264_13640 0.58 -0.3
3,190,060 + CA264_13640 0.62 +0.5
3,190,066 - CA264_13640 0.62 +0.1
3,190,089 + CA264_13640 0.63 -2.2
3,190,094 + CA264_13640 0.63 -0.2
3,190,094 + CA264_13640 0.63 +0.0
3,190,095 - CA264_13640 0.63 -0.0
3,190,095 - CA264_13640 0.63 -0.3
3,190,095 - CA264_13640 0.63 -0.2
3,190,135 + CA264_13640 0.65 -0.3
3,190,135 + CA264_13640 0.65 -1.2
3,190,136 - CA264_13640 0.66 +1.3
3,190,136 - CA264_13640 0.66 +0.2
3,190,139 + CA264_13640 0.66 -0.3
3,190,139 + CA264_13640 0.66 +0.4
3,190,139 + CA264_13640 0.66 +0.3
3,190,139 + CA264_13640 0.66 +1.6
3,190,139 + CA264_13640 0.66 -0.4
3,190,140 - CA264_13640 0.66 -2.1
3,190,140 - CA264_13640 0.66 -0.4
3,190,140 - CA264_13640 0.66 +0.3
3,190,155 + CA264_13640 0.66 -0.3
3,190,205 + CA264_13640 0.69 +0.1
3,190,205 + CA264_13640 0.69 -0.5
3,190,205 + CA264_13640 0.69 +1.2
3,190,205 + CA264_13640 0.69 -0.2
3,190,206 - CA264_13640 0.69 +0.6
3,190,206 - CA264_13640 0.69 -0.1
3,190,217 + CA264_13640 0.70 +0.8
3,190,239 - CA264_13640 0.71 -0.5
3,190,247 + CA264_13640 0.71 +0.1
3,190,322 + CA264_13640 0.75 -0.1
3,190,338 + CA264_13640 0.76 -0.3
3,190,346 + CA264_13640 0.76 +0.8
3,190,346 + CA264_13640 0.76 -1.4
3,190,488 + CA264_13640 0.83 +0.9
3,190,489 - CA264_13640 0.83 -0.2
3,190,507 + CA264_13640 0.84 +0.5
3,190,538 + CA264_13640 0.86 -0.1
3,190,538 + CA264_13640 0.86 +0.4
3,190,543 + CA264_13640 0.86 +2.1
3,190,544 - CA264_13640 0.86 -0.3
3,190,546 + CA264_13640 0.86 -0.7
3,190,632 - +0.1
3,190,694 + -0.9
3,190,695 - -1.3
3,190,707 + -0.6
3,190,707 + +0.5
3,190,828 + +0.6
3,190,828 + +0.6
3,190,829 - -0.1
3,190,832 + +1.3
3,190,833 - -0.0
3,190,837 - -0.2
3,190,837 - +0.7
3,190,839 + +0.2
3,190,839 + +0.7
3,190,839 + -0.5
3,190,839 + +0.3
3,190,840 - +0.6
3,190,840 - +0.3
3,190,840 - -0.1
3,190,844 - +0.4
3,190,844 - +0.3
3,190,844 - -0.4
3,190,907 - CA264_13645 0.16 +0.0
3,190,913 - CA264_13645 0.19 +0.1
3,190,936 + CA264_13645 0.28 -1.2
3,190,937 - CA264_13645 0.28 +0.3
3,190,959 - CA264_13645 0.36 +1.5
3,191,032 + CA264_13645 0.65 +0.8
3,191,033 - CA264_13645 0.65 +0.3
3,191,105 + -0.1
3,191,133 - -0.6
3,191,137 + -0.2
3,191,157 + -0.3
3,191,217 + +0.9
3,191,217 + +1.1
3,191,217 + -0.2
3,191,218 - +0.5
3,191,221 - +0.6
3,191,222 + -0.5
3,191,223 - +0.7
3,191,223 - +0.3
3,191,226 + +0.5
3,191,261 + +0.9
3,191,323 + -0.4
3,191,324 - -1.9
3,191,362 - +1.5
3,191,377 - -0.9
3,191,390 + +1.9
3,191,391 - +1.5
3,191,520 + CA264_13650 0.44 +0.1
3,191,564 - CA264_13650 0.58 -0.1
3,191,585 + CA264_13650 0.65 +1.3
3,191,585 + CA264_13650 0.65 -1.9
3,191,717 - -0.6
3,191,825 - +0.4
3,191,839 - -0.2
3,191,840 + -0.3
3,191,840 + -0.2
3,191,841 - -0.4
3,191,841 - -0.3
3,191,841 - -1.8
3,191,843 - +0.7
3,191,844 + +0.4
3,191,844 + +0.2
3,191,845 - -0.5
3,191,845 - -0.9
3,191,848 + -0.2
3,191,848 + +0.4
3,191,848 + -0.1
3,191,856 + -0.6
3,191,856 + +0.1
3,191,858 + +0.4
3,191,944 - +0.3
3,191,944 - -0.1
3,191,976 + -0.4
3,192,037 + CA264_13655 0.12 +0.4
3,192,038 - CA264_13655 0.12 -1.0
3,192,080 - CA264_13655 0.18 +0.1

Or see this region's nucleotide sequence