Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10555 and CA264_10560 are separated by 225 nucleotides CA264_10560 and CA264_10565 are separated by 123 nucleotides
CA264_10555: CA264_10555 - AraC family transcriptional regulator, at 2,446,470 to 2,447,375
_10555
CA264_10560: CA264_10560 - MBL fold metallo-hydrolase, at 2,447,601 to 2,448,413
_10560
CA264_10565: CA264_10565 - cation transporter, at 2,448,537 to 2,449,445
_10565
Position (kb)
2447
2448
2449 Strain fitness (log2 ratio)
-2
-1
0
1 at 2446.611 kb on + strand, within CA264_10555 at 2446.614 kb on + strand, within CA264_10555 at 2446.615 kb on - strand, within CA264_10555 at 2446.633 kb on + strand, within CA264_10555 at 2446.818 kb on + strand, within CA264_10555 at 2446.819 kb on - strand, within CA264_10555 at 2446.835 kb on + strand, within CA264_10555 at 2446.835 kb on + strand, within CA264_10555 at 2446.836 kb on - strand, within CA264_10555 at 2446.836 kb on - strand, within CA264_10555 at 2446.836 kb on - strand, within CA264_10555 at 2446.836 kb on - strand, within CA264_10555 at 2446.987 kb on - strand, within CA264_10555 at 2447.040 kb on + strand, within CA264_10555 at 2447.082 kb on + strand, within CA264_10555 at 2447.082 kb on + strand, within CA264_10555 at 2447.082 kb on + strand, within CA264_10555 at 2447.082 kb on + strand, within CA264_10555 at 2447.082 kb on + strand, within CA264_10555 at 2447.083 kb on - strand, within CA264_10555 at 2447.083 kb on - strand, within CA264_10555 at 2447.083 kb on - strand, within CA264_10555 at 2447.106 kb on + strand, within CA264_10555 at 2447.106 kb on + strand, within CA264_10555 at 2447.107 kb on - strand, within CA264_10555 at 2447.107 kb on - strand, within CA264_10555 at 2447.109 kb on + strand, within CA264_10555 at 2447.109 kb on + strand, within CA264_10555 at 2447.110 kb on - strand, within CA264_10555 at 2447.163 kb on + strand, within CA264_10555 at 2447.164 kb on - strand, within CA264_10555 at 2447.164 kb on - strand, within CA264_10555 at 2447.248 kb on + strand, within CA264_10555 at 2447.248 kb on + strand, within CA264_10555 at 2447.289 kb on + strand at 2447.307 kb on - strand at 2447.374 kb on - strand at 2447.449 kb on + strand at 2447.450 kb on - strand at 2447.480 kb on - strand at 2447.530 kb on + strand at 2447.530 kb on + strand at 2447.531 kb on - strand at 2447.576 kb on + strand at 2447.870 kb on - strand, within CA264_10560 at 2447.913 kb on + strand, within CA264_10560 at 2447.949 kb on - strand, within CA264_10560 at 2447.949 kb on - strand, within CA264_10560 at 2447.964 kb on + strand, within CA264_10560 at 2447.967 kb on + strand, within CA264_10560 at 2447.968 kb on - strand, within CA264_10560 at 2448.040 kb on + strand, within CA264_10560 at 2448.041 kb on - strand, within CA264_10560 at 2448.198 kb on + strand, within CA264_10560 at 2448.199 kb on - strand, within CA264_10560 at 2448.230 kb on + strand, within CA264_10560 at 2448.230 kb on + strand, within CA264_10560 at 2448.230 kb on + strand, within CA264_10560 at 2448.231 kb on - strand, within CA264_10560 at 2448.231 kb on - strand, within CA264_10560 at 2448.231 kb on - strand, within CA264_10560 at 2448.231 kb on - strand, within CA264_10560 at 2448.234 kb on + strand, within CA264_10560 at 2448.234 kb on + strand, within CA264_10560 at 2448.234 kb on + strand, within CA264_10560 at 2448.234 kb on + strand, within CA264_10560 at 2448.234 kb on + strand, within CA264_10560 at 2448.234 kb on + strand, within CA264_10560 at 2448.235 kb on - strand, within CA264_10560 at 2448.235 kb on - strand, within CA264_10560 at 2448.235 kb on - strand, within CA264_10560 at 2448.240 kb on + strand, within CA264_10560 at 2448.282 kb on - strand, within CA264_10560 at 2448.282 kb on - strand, within CA264_10560 at 2448.283 kb on + strand, within CA264_10560 at 2448.283 kb on + strand, within CA264_10560 at 2448.403 kb on - strand at 2448.433 kb on + strand at 2448.440 kb on - strand at 2448.470 kb on + strand at 2448.471 kb on - strand at 2448.505 kb on - strand at 2448.505 kb on - strand at 2448.540 kb on + strand at 2448.544 kb on + strand at 2448.546 kb on + strand at 2448.546 kb on + strand at 2448.546 kb on + strand at 2448.552 kb on + strand at 2448.597 kb on + strand at 2448.650 kb on + strand, within CA264_10565 at 2448.783 kb on + strand, within CA264_10565 at 2448.784 kb on - strand, within CA264_10565 at 2448.784 kb on - strand, within CA264_10565 at 2448.885 kb on + strand, within CA264_10565 at 2449.029 kb on - strand, within CA264_10565 at 2449.108 kb on - strand, within CA264_10565 at 2449.108 kb on - strand, within CA264_10565 at 2449.160 kb on + strand, within CA264_10565 at 2449.160 kb on + strand, within CA264_10565 at 2449.161 kb on - strand, within CA264_10565 at 2449.161 kb on - strand, within CA264_10565 at 2449.170 kb on - strand, within CA264_10565 at 2449.201 kb on + strand, within CA264_10565 at 2449.202 kb on - strand, within CA264_10565 at 2449.207 kb on + strand, within CA264_10565 at 2449.207 kb on + strand, within CA264_10565 at 2449.208 kb on - strand, within CA264_10565 at 2449.208 kb on - strand, within CA264_10565 at 2449.208 kb on - strand, within CA264_10565 at 2449.208 kb on - strand, within CA264_10565
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 2,446,611 + CA264_10555 0.16 -0.5 2,446,614 + CA264_10555 0.16 -1.2 2,446,615 - CA264_10555 0.16 +0.0 2,446,633 + CA264_10555 0.18 -0.1 2,446,818 + CA264_10555 0.38 -1.1 2,446,819 - CA264_10555 0.39 -0.6 2,446,835 + CA264_10555 0.40 -0.6 2,446,835 + CA264_10555 0.40 -0.0 2,446,836 - CA264_10555 0.40 -0.3 2,446,836 - CA264_10555 0.40 +0.8 2,446,836 - CA264_10555 0.40 +0.6 2,446,836 - CA264_10555 0.40 +0.3 2,446,987 - CA264_10555 0.57 -0.0 2,447,040 + CA264_10555 0.63 -0.5 2,447,082 + CA264_10555 0.68 +1.2 2,447,082 + CA264_10555 0.68 -0.1 2,447,082 + CA264_10555 0.68 -1.7 2,447,082 + CA264_10555 0.68 -0.4 2,447,082 + CA264_10555 0.68 +0.3 2,447,083 - CA264_10555 0.68 +0.6 2,447,083 - CA264_10555 0.68 -1.6 2,447,083 - CA264_10555 0.68 +0.5 2,447,106 + CA264_10555 0.70 -0.9 2,447,106 + CA264_10555 0.70 +0.0 2,447,107 - CA264_10555 0.70 +0.4 2,447,107 - CA264_10555 0.70 -0.5 2,447,109 + CA264_10555 0.71 +0.2 2,447,109 + CA264_10555 0.71 -0.5 2,447,110 - CA264_10555 0.71 +0.7 2,447,163 + CA264_10555 0.76 -0.2 2,447,164 - CA264_10555 0.77 +0.2 2,447,164 - CA264_10555 0.77 -0.5 2,447,248 + CA264_10555 0.86 -0.4 2,447,248 + CA264_10555 0.86 -0.2 2,447,289 + -0.4 2,447,307 - +0.4 2,447,374 - +0.2 2,447,449 + -0.1 2,447,450 - -0.3 2,447,480 - -0.4 2,447,530 + +0.0 2,447,530 + -0.8 2,447,531 - -0.0 2,447,576 + -0.3 2,447,870 - CA264_10560 0.33 +1.5 2,447,913 + CA264_10560 0.38 +0.0 2,447,949 - CA264_10560 0.43 -2.0 2,447,949 - CA264_10560 0.43 +0.7 2,447,964 + CA264_10560 0.45 +0.2 2,447,967 + CA264_10560 0.45 -0.5 2,447,968 - CA264_10560 0.45 -0.1 2,448,040 + CA264_10560 0.54 +0.8 2,448,041 - CA264_10560 0.54 -1.2 2,448,198 + CA264_10560 0.73 +0.1 2,448,199 - CA264_10560 0.74 +0.5 2,448,230 + CA264_10560 0.77 +0.3 2,448,230 + CA264_10560 0.77 -0.0 2,448,230 + CA264_10560 0.77 -0.5 2,448,231 - CA264_10560 0.77 -0.6 2,448,231 - CA264_10560 0.77 +0.1 2,448,231 - CA264_10560 0.77 +0.6 2,448,231 - CA264_10560 0.77 +0.5 2,448,234 + CA264_10560 0.78 -1.4 2,448,234 + CA264_10560 0.78 +0.3 2,448,234 + CA264_10560 0.78 +0.4 2,448,234 + CA264_10560 0.78 +0.5 2,448,234 + CA264_10560 0.78 -0.0 2,448,234 + CA264_10560 0.78 -0.2 2,448,235 - CA264_10560 0.78 +0.2 2,448,235 - CA264_10560 0.78 -1.4 2,448,235 - CA264_10560 0.78 -0.8 2,448,240 + CA264_10560 0.79 +0.6 2,448,282 - CA264_10560 0.84 +0.3 2,448,282 - CA264_10560 0.84 -0.5 2,448,283 + CA264_10560 0.84 +0.0 2,448,283 + CA264_10560 0.84 -1.3 2,448,403 - -0.1 2,448,433 + +0.4 2,448,440 - -1.7 2,448,470 + -0.1 2,448,471 - -0.5 2,448,505 - +0.1 2,448,505 - -0.4 2,448,540 + -0.4 2,448,544 + +0.2 2,448,546 + +0.5 2,448,546 + +0.4 2,448,546 + -0.3 2,448,552 + +0.4 2,448,597 + -0.4 2,448,650 + CA264_10565 0.12 +0.3 2,448,783 + CA264_10565 0.27 +0.4 2,448,784 - CA264_10565 0.27 -0.1 2,448,784 - CA264_10565 0.27 -0.0 2,448,885 + CA264_10565 0.38 +0.5 2,449,029 - CA264_10565 0.54 +1.5 2,449,108 - CA264_10565 0.63 -0.1 2,449,108 - CA264_10565 0.63 +0.6 2,449,160 + CA264_10565 0.69 -0.8 2,449,160 + CA264_10565 0.69 -0.9 2,449,161 - CA264_10565 0.69 -0.2 2,449,161 - CA264_10565 0.69 -0.3 2,449,170 - CA264_10565 0.70 +1.4 2,449,201 + CA264_10565 0.73 +0.5 2,449,202 - CA264_10565 0.73 -1.2 2,449,207 + CA264_10565 0.74 -0.6 2,449,207 + CA264_10565 0.74 -0.3 2,449,208 - CA264_10565 0.74 -1.2 2,449,208 - CA264_10565 0.74 +0.0 2,449,208 - CA264_10565 0.74 -0.5 2,449,208 - CA264_10565 0.74 -0.3
Or see this region's nucleotide sequence