Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09840

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09840 and CA264_09845 are separated by 607 nucleotides CA264_09840: CA264_09840 - hypothetical protein, at 2,289,364 to 2,289,576 _09840 CA264_09845: CA264_09845 - LLM class flavin-dependent oxidoreductase, at 2,290,184 to 2,291,098 _09845 Position (kb) 2289 2290Strain fitness (log2 ratio) -2 -1 0 1 2at 2288.416 kb on + strandat 2288.416 kb on + strandat 2288.429 kb on - strandat 2288.433 kb on - strandat 2288.453 kb on + strandat 2288.453 kb on + strandat 2288.453 kb on + strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.454 kb on - strandat 2288.661 kb on + strandat 2288.679 kb on + strandat 2288.825 kb on + strandat 2288.826 kb on - strandat 2288.844 kb on + strandat 2288.855 kb on + strandat 2288.856 kb on - strandat 2288.856 kb on - strandat 2288.856 kb on - strandat 2288.911 kb on - strandat 2288.920 kb on + strandat 2288.921 kb on - strandat 2288.947 kb on - strandat 2289.108 kb on + strandat 2289.108 kb on + strandat 2289.109 kb on - strandat 2289.109 kb on - strandat 2289.109 kb on - strandat 2289.116 kb on - strandat 2289.120 kb on + strandat 2289.142 kb on + strandat 2289.247 kb on + strandat 2289.247 kb on + strandat 2289.251 kb on + strandat 2289.252 kb on - strandat 2289.272 kb on + strandat 2289.272 kb on + strandat 2289.273 kb on - strandat 2289.312 kb on - strandat 2289.332 kb on + strandat 2289.333 kb on - strandat 2289.338 kb on - strandat 2289.338 kb on - strandat 2289.347 kb on + strandat 2289.362 kb on - strandat 2289.689 kb on + strandat 2289.753 kb on + strandat 2289.753 kb on + strandat 2289.821 kb on - strandat 2289.821 kb on - strandat 2289.821 kb on - strandat 2289.849 kb on + strandat 2289.849 kb on + strandat 2289.849 kb on + strandat 2289.849 kb on + strandat 2289.849 kb on + strandat 2289.850 kb on - strandat 2289.850 kb on - strandat 2289.850 kb on - strandat 2289.850 kb on - strandat 2289.850 kb on - strandat 2289.852 kb on + strandat 2289.853 kb on - strandat 2289.941 kb on + strandat 2289.946 kb on + strandat 2289.946 kb on + strandat 2289.946 kb on + strandat 2289.947 kb on - strandat 2289.947 kb on - strandat 2289.947 kb on - strandat 2289.966 kb on + strandat 2289.993 kb on - strandat 2290.064 kb on + strandat 2290.065 kb on - strandat 2290.140 kb on - strandat 2290.143 kb on + strandat 2290.265 kb on + strandat 2290.266 kb on - strandat 2290.266 kb on - strandat 2290.314 kb on + strand, within CA264_09845at 2290.315 kb on - strand, within CA264_09845at 2290.315 kb on - strand, within CA264_09845at 2290.344 kb on + strand, within CA264_09845at 2290.345 kb on - strand, within CA264_09845at 2290.345 kb on - strand, within CA264_09845at 2290.397 kb on + strand, within CA264_09845at 2290.553 kb on + strand, within CA264_09845at 2290.553 kb on + strand, within CA264_09845at 2290.553 kb on + strand, within CA264_09845at 2290.553 kb on + strand, within CA264_09845at 2290.553 kb on + strand, within CA264_09845at 2290.554 kb on - strand, within CA264_09845at 2290.554 kb on - strand, within CA264_09845at 2290.557 kb on + strand, within CA264_09845at 2290.557 kb on + strand, within CA264_09845at 2290.558 kb on - strand, within CA264_09845

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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2,288,416 + -0.8
2,288,416 + +1.7
2,288,429 - +0.3
2,288,433 - +1.0
2,288,453 + -0.1
2,288,453 + +0.3
2,288,453 + -0.5
2,288,454 - -0.3
2,288,454 - -0.0
2,288,454 - -0.2
2,288,454 - -1.4
2,288,661 + -0.1
2,288,679 + +0.4
2,288,825 + +0.3
2,288,826 - +1.3
2,288,844 + +0.0
2,288,855 + +0.7
2,288,856 - +0.1
2,288,856 - -0.2
2,288,856 - -0.2
2,288,911 - +0.5
2,288,920 + +0.3
2,288,921 - +0.2
2,288,947 - +0.4
2,289,108 + +0.5
2,289,108 + -1.1
2,289,109 - +0.2
2,289,109 - +0.3
2,289,109 - -0.2
2,289,116 - +0.3
2,289,120 + -0.5
2,289,142 + -0.2
2,289,247 + +0.6
2,289,247 + -0.0
2,289,251 + +0.3
2,289,252 - -0.1
2,289,272 + -0.4
2,289,272 + -0.4
2,289,273 - +1.2
2,289,312 - +0.7
2,289,332 + +0.3
2,289,333 - -1.7
2,289,338 - -0.2
2,289,338 - -1.0
2,289,347 + +2.0
2,289,362 - +0.4
2,289,689 + +0.1
2,289,753 + -0.3
2,289,753 + -2.7
2,289,821 - -0.5
2,289,821 - -0.9
2,289,821 - -0.5
2,289,849 + +0.1
2,289,849 + +0.2
2,289,849 + +0.2
2,289,849 + +0.9
2,289,849 + +0.2
2,289,850 - -0.2
2,289,850 - -1.0
2,289,850 - -0.3
2,289,850 - +0.0
2,289,850 - +1.4
2,289,852 + +0.2
2,289,853 - -0.7
2,289,941 + -0.1
2,289,946 + +0.9
2,289,946 + -0.1
2,289,946 + -0.3
2,289,947 - +2.3
2,289,947 - -0.0
2,289,947 - -0.5
2,289,966 + -0.5
2,289,993 - -1.0
2,290,064 + +1.6
2,290,065 - -0.1
2,290,140 - -0.1
2,290,143 + +0.1
2,290,265 + +0.3
2,290,266 - -0.4
2,290,266 - -0.1
2,290,314 + CA264_09845 0.14 +0.4
2,290,315 - CA264_09845 0.14 -1.2
2,290,315 - CA264_09845 0.14 +0.3
2,290,344 + CA264_09845 0.17 +0.2
2,290,345 - CA264_09845 0.18 +1.0
2,290,345 - CA264_09845 0.18 +0.4
2,290,397 + CA264_09845 0.23 -0.2
2,290,553 + CA264_09845 0.40 -0.6
2,290,553 + CA264_09845 0.40 +0.3
2,290,553 + CA264_09845 0.40 -0.5
2,290,553 + CA264_09845 0.40 -0.6
2,290,553 + CA264_09845 0.40 -0.4
2,290,554 - CA264_09845 0.40 -0.4
2,290,554 - CA264_09845 0.40 -0.4
2,290,557 + CA264_09845 0.41 +0.2
2,290,557 + CA264_09845 0.41 -0.1
2,290,558 - CA264_09845 0.41 -0.3

Or see this region's nucleotide sequence