Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09470

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09465 and CA264_09470 are separated by 132 nucleotidesCA264_09470 and CA264_09475 are separated by 46 nucleotides CA264_09465: CA264_09465 - tungsten formylmethanofuran dehydrogenase, at 2,210,312 to 2,211,373 _09465 CA264_09470: CA264_09470 - PAS domain-containing sensor histidine kinase, at 2,211,506 to 2,213,338 _09470 CA264_09475: CA264_09475 - histidine kinase, at 2,213,385 to 2,214,533 _09475 Position (kb) 2211 2212 2213 2214Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2210.593 kb on + strand, within CA264_09465at 2210.596 kb on - strand, within CA264_09465at 2210.662 kb on + strand, within CA264_09465at 2210.663 kb on - strand, within CA264_09465at 2210.667 kb on - strand, within CA264_09465at 2210.679 kb on + strand, within CA264_09465at 2210.689 kb on + strand, within CA264_09465at 2210.689 kb on + strand, within CA264_09465at 2210.691 kb on + strand, within CA264_09465at 2210.774 kb on - strand, within CA264_09465at 2210.791 kb on + strand, within CA264_09465at 2210.792 kb on - strand, within CA264_09465at 2210.792 kb on - strand, within CA264_09465at 2210.792 kb on - strand, within CA264_09465at 2210.792 kb on - strand, within CA264_09465at 2210.833 kb on - strand, within CA264_09465at 2210.833 kb on - strand, within CA264_09465at 2210.839 kb on + strand, within CA264_09465at 2210.839 kb on + strand, within CA264_09465at 2210.839 kb on + strand, within CA264_09465at 2210.840 kb on - strand, within CA264_09465at 2210.935 kb on - strand, within CA264_09465at 2210.960 kb on - strand, within CA264_09465at 2211.102 kb on + strand, within CA264_09465at 2211.183 kb on + strand, within CA264_09465at 2211.199 kb on + strand, within CA264_09465at 2211.205 kb on - strand, within CA264_09465at 2211.301 kb on + strandat 2211.340 kb on - strandat 2211.340 kb on - strandat 2211.395 kb on - strandat 2211.407 kb on - strandat 2211.407 kb on - strandat 2211.410 kb on + strandat 2211.410 kb on + strandat 2211.410 kb on + strandat 2211.411 kb on - strandat 2211.412 kb on + strandat 2211.412 kb on + strandat 2211.412 kb on + strandat 2211.412 kb on + strandat 2211.484 kb on + strandat 2211.484 kb on + strandat 2211.485 kb on - strandat 2211.485 kb on - strandat 2211.485 kb on - strandat 2211.485 kb on - strandat 2211.495 kb on - strandat 2211.526 kb on - strandat 2211.550 kb on + strandat 2211.553 kb on + strandat 2211.604 kb on + strandat 2211.620 kb on - strandat 2211.649 kb on - strandat 2211.731 kb on + strand, within CA264_09470at 2211.737 kb on + strand, within CA264_09470at 2211.823 kb on + strand, within CA264_09470at 2211.849 kb on - strand, within CA264_09470at 2212.019 kb on + strand, within CA264_09470at 2212.020 kb on - strand, within CA264_09470at 2212.127 kb on + strand, within CA264_09470at 2212.127 kb on + strand, within CA264_09470at 2212.128 kb on - strand, within CA264_09470at 2212.139 kb on + strand, within CA264_09470at 2212.223 kb on + strand, within CA264_09470at 2212.224 kb on - strand, within CA264_09470at 2212.232 kb on + strand, within CA264_09470at 2212.238 kb on + strand, within CA264_09470at 2212.239 kb on - strand, within CA264_09470at 2212.246 kb on - strand, within CA264_09470at 2212.246 kb on - strand, within CA264_09470at 2212.254 kb on - strand, within CA264_09470at 2212.314 kb on + strand, within CA264_09470at 2212.314 kb on + strand, within CA264_09470at 2212.315 kb on - strand, within CA264_09470at 2212.315 kb on - strand, within CA264_09470at 2212.315 kb on - strand, within CA264_09470at 2212.471 kb on + strand, within CA264_09470at 2212.472 kb on - strand, within CA264_09470at 2212.630 kb on + strand, within CA264_09470at 2212.630 kb on + strand, within CA264_09470at 2212.631 kb on - strand, within CA264_09470at 2212.631 kb on - strand, within CA264_09470at 2212.632 kb on + strand, within CA264_09470at 2212.633 kb on - strand, within CA264_09470at 2212.633 kb on - strand, within CA264_09470at 2212.634 kb on + strand, within CA264_09470at 2212.635 kb on - strand, within CA264_09470at 2212.635 kb on - strand, within CA264_09470at 2212.635 kb on - strand, within CA264_09470at 2212.715 kb on - strand, within CA264_09470at 2212.746 kb on - strand, within CA264_09470at 2212.808 kb on + strand, within CA264_09470at 2212.813 kb on + strand, within CA264_09470at 2212.835 kb on + strand, within CA264_09470at 2212.941 kb on + strand, within CA264_09470at 2212.942 kb on - strand, within CA264_09470at 2212.944 kb on + strand, within CA264_09470at 2212.944 kb on + strand, within CA264_09470at 2212.945 kb on - strand, within CA264_09470at 2212.958 kb on + strand, within CA264_09470at 2213.124 kb on - strand, within CA264_09470at 2213.139 kb on - strand, within CA264_09470at 2213.139 kb on - strand, within CA264_09470at 2213.164 kb on + strandat 2213.206 kb on - strandat 2213.227 kb on + strandat 2213.269 kb on - strandat 2213.269 kb on - strandat 2213.271 kb on - strandat 2213.286 kb on - strandat 2213.318 kb on - strandat 2213.344 kb on + strandat 2213.344 kb on + strandat 2213.345 kb on - strandat 2213.466 kb on - strandat 2213.517 kb on - strand, within CA264_09475at 2213.542 kb on - strand, within CA264_09475at 2213.616 kb on - strand, within CA264_09475at 2213.680 kb on + strand, within CA264_09475at 2213.997 kb on - strand, within CA264_09475at 2214.071 kb on - strand, within CA264_09475at 2214.087 kb on - strand, within CA264_09475at 2214.130 kb on - strand, within CA264_09475at 2214.186 kb on - strand, within CA264_09475at 2214.186 kb on - strand, within CA264_09475at 2214.186 kb on - strand, within CA264_09475

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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2,210,593 + CA264_09465 0.26 -0.3
2,210,596 - CA264_09465 0.27 +0.8
2,210,662 + CA264_09465 0.33 +0.3
2,210,663 - CA264_09465 0.33 +0.2
2,210,667 - CA264_09465 0.33 -0.6
2,210,679 + CA264_09465 0.35 +0.8
2,210,689 + CA264_09465 0.35 -0.6
2,210,689 + CA264_09465 0.35 +0.0
2,210,691 + CA264_09465 0.36 -0.2
2,210,774 - CA264_09465 0.44 +1.3
2,210,791 + CA264_09465 0.45 -0.2
2,210,792 - CA264_09465 0.45 +0.2
2,210,792 - CA264_09465 0.45 -0.3
2,210,792 - CA264_09465 0.45 +1.6
2,210,792 - CA264_09465 0.45 +0.3
2,210,833 - CA264_09465 0.49 -0.3
2,210,833 - CA264_09465 0.49 -0.5
2,210,839 + CA264_09465 0.50 -1.5
2,210,839 + CA264_09465 0.50 -0.2
2,210,839 + CA264_09465 0.50 -0.0
2,210,840 - CA264_09465 0.50 -0.1
2,210,935 - CA264_09465 0.59 +1.2
2,210,960 - CA264_09465 0.61 +0.6
2,211,102 + CA264_09465 0.74 -0.1
2,211,183 + CA264_09465 0.82 -1.0
2,211,199 + CA264_09465 0.84 -0.1
2,211,205 - CA264_09465 0.84 +0.5
2,211,301 + +0.2
2,211,340 - -0.4
2,211,340 - -0.3
2,211,395 - -0.5
2,211,407 - +0.4
2,211,407 - -0.2
2,211,410 + +0.8
2,211,410 + -0.2
2,211,410 + -0.1
2,211,411 - -0.0
2,211,412 + -0.2
2,211,412 + +0.1
2,211,412 + +0.3
2,211,412 + +0.1
2,211,484 + -0.5
2,211,484 + -0.4
2,211,485 - -0.2
2,211,485 - -1.1
2,211,485 - -0.2
2,211,485 - +0.2
2,211,495 - -1.2
2,211,526 - +0.1
2,211,550 + -1.9
2,211,553 + -0.2
2,211,604 + -0.2
2,211,620 - -0.7
2,211,649 - +0.4
2,211,731 + CA264_09470 0.12 -0.2
2,211,737 + CA264_09470 0.13 +2.1
2,211,823 + CA264_09470 0.17 +0.4
2,211,849 - CA264_09470 0.19 -1.0
2,212,019 + CA264_09470 0.28 +0.5
2,212,020 - CA264_09470 0.28 -1.7
2,212,127 + CA264_09470 0.34 -0.1
2,212,127 + CA264_09470 0.34 -0.7
2,212,128 - CA264_09470 0.34 -0.2
2,212,139 + CA264_09470 0.35 -0.4
2,212,223 + CA264_09470 0.39 +0.5
2,212,224 - CA264_09470 0.39 +1.1
2,212,232 + CA264_09470 0.40 -0.9
2,212,238 + CA264_09470 0.40 +0.8
2,212,239 - CA264_09470 0.40 +0.1
2,212,246 - CA264_09470 0.40 -0.9
2,212,246 - CA264_09470 0.40 +0.6
2,212,254 - CA264_09470 0.41 -0.5
2,212,314 + CA264_09470 0.44 -0.3
2,212,314 + CA264_09470 0.44 +0.6
2,212,315 - CA264_09470 0.44 +0.0
2,212,315 - CA264_09470 0.44 -0.3
2,212,315 - CA264_09470 0.44 -0.3
2,212,471 + CA264_09470 0.53 +1.1
2,212,472 - CA264_09470 0.53 +0.3
2,212,630 + CA264_09470 0.61 +0.4
2,212,630 + CA264_09470 0.61 +0.5
2,212,631 - CA264_09470 0.61 +0.4
2,212,631 - CA264_09470 0.61 -0.9
2,212,632 + CA264_09470 0.61 -0.6
2,212,633 - CA264_09470 0.61 +0.8
2,212,633 - CA264_09470 0.61 +0.5
2,212,634 + CA264_09470 0.62 -0.6
2,212,635 - CA264_09470 0.62 -0.4
2,212,635 - CA264_09470 0.62 -0.3
2,212,635 - CA264_09470 0.62 +0.3
2,212,715 - CA264_09470 0.66 -1.9
2,212,746 - CA264_09470 0.68 +0.6
2,212,808 + CA264_09470 0.71 +0.2
2,212,813 + CA264_09470 0.71 -0.1
2,212,835 + CA264_09470 0.73 -0.1
2,212,941 + CA264_09470 0.78 +1.8
2,212,942 - CA264_09470 0.78 -0.7
2,212,944 + CA264_09470 0.78 -1.4
2,212,944 + CA264_09470 0.78 -0.1
2,212,945 - CA264_09470 0.79 +0.1
2,212,958 + CA264_09470 0.79 -0.3
2,213,124 - CA264_09470 0.88 +0.1
2,213,139 - CA264_09470 0.89 -0.1
2,213,139 - CA264_09470 0.89 +0.3
2,213,164 + -0.2
2,213,206 - -0.5
2,213,227 + -0.2
2,213,269 - -0.2
2,213,269 - +0.6
2,213,271 - -1.2
2,213,286 - -1.1
2,213,318 - +0.5
2,213,344 + -0.9
2,213,344 + -0.1
2,213,345 - +0.3
2,213,466 - +0.3
2,213,517 - CA264_09475 0.11 +1.1
2,213,542 - CA264_09475 0.14 +1.4
2,213,616 - CA264_09475 0.20 +2.8
2,213,680 + CA264_09475 0.26 -0.4
2,213,997 - CA264_09475 0.53 +0.4
2,214,071 - CA264_09475 0.60 +0.0
2,214,087 - CA264_09475 0.61 -0.1
2,214,130 - CA264_09475 0.65 -0.0
2,214,186 - CA264_09475 0.70 -1.4
2,214,186 - CA264_09475 0.70 +0.2
2,214,186 - CA264_09475 0.70 -0.2

Or see this region's nucleotide sequence