Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07490

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07480 and CA264_07485 are separated by 3 nucleotidesCA264_07485 and CA264_07490 are separated by 133 nucleotidesCA264_07490 and CA264_07495 are separated by 179 nucleotides CA264_07480: CA264_07480 - DUF58 domain-containing protein, at 1,732,571 to 1,733,482 _07480 CA264_07485: CA264_07485 - septal ring lytic transglycosylase RlpA family lipoprotein, at 1,733,486 to 1,733,899 _07485 CA264_07490: CA264_07490 - RNA-binding protein, at 1,734,033 to 1,734,362 _07490 CA264_07495: CA264_07495 - GTP-binding protein YchF, at 1,734,542 to 1,735,639 _07495 Position (kb) 1734 1735Strain fitness (log2 ratio) -2 -1 0 1 2at 1733.203 kb on - strand, within CA264_07480at 1733.205 kb on + strand, within CA264_07480at 1733.205 kb on + strand, within CA264_07480at 1733.206 kb on - strand, within CA264_07480at 1733.209 kb on + strand, within CA264_07480at 1733.263 kb on - strand, within CA264_07480at 1733.338 kb on - strand, within CA264_07480at 1733.453 kb on + strandat 1733.454 kb on - strandat 1733.495 kb on - strandat 1733.630 kb on + strand, within CA264_07485at 1733.631 kb on - strand, within CA264_07485at 1733.762 kb on - strand, within CA264_07485at 1733.812 kb on - strand, within CA264_07485at 1733.838 kb on + strand, within CA264_07485at 1733.839 kb on - strand, within CA264_07485at 1733.880 kb on - strandat 1733.891 kb on + strandat 1733.891 kb on + strandat 1733.894 kb on - strandat 1733.894 kb on - strandat 1733.900 kb on - strandat 1733.902 kb on + strandat 1733.903 kb on - strandat 1733.907 kb on + strandat 1733.974 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.992 kb on + strandat 1734.233 kb on + strand, within CA264_07490at 1734.350 kb on + strandat 1734.386 kb on + strandat 1734.386 kb on + strandat 1734.429 kb on - strandat 1734.532 kb on + strandat 1734.532 kb on + strandat 1734.532 kb on + strandat 1734.533 kb on - strandat 1734.538 kb on - strandat 1734.635 kb on + strandat 1734.741 kb on + strand, within CA264_07495

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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1,733,203 - CA264_07480 0.69 -1.0
1,733,205 + CA264_07480 0.70 +0.3
1,733,205 + CA264_07480 0.70 -0.1
1,733,206 - CA264_07480 0.70 +1.6
1,733,209 + CA264_07480 0.70 -0.6
1,733,263 - CA264_07480 0.76 -0.2
1,733,338 - CA264_07480 0.84 -0.2
1,733,453 + +1.1
1,733,454 - -0.9
1,733,495 - +0.6
1,733,630 + CA264_07485 0.35 -0.2
1,733,631 - CA264_07485 0.35 -0.2
1,733,762 - CA264_07485 0.67 +0.4
1,733,812 - CA264_07485 0.79 -0.2
1,733,838 + CA264_07485 0.85 +0.5
1,733,839 - CA264_07485 0.85 -0.8
1,733,880 - -0.1
1,733,891 + -0.3
1,733,891 + +0.3
1,733,894 - -0.2
1,733,894 - -0.5
1,733,900 - -1.8
1,733,902 + +2.7
1,733,903 - -0.4
1,733,907 + +0.5
1,733,974 + -0.3
1,733,987 + -0.5
1,733,987 + -0.1
1,733,992 + -0.2
1,734,233 + CA264_07490 0.61 -1.2
1,734,350 + -0.2
1,734,386 + -0.5
1,734,386 + +1.6
1,734,429 - -0.9
1,734,532 + +0.3
1,734,532 + -0.8
1,734,532 + +0.2
1,734,533 - -0.4
1,734,538 - +1.0
1,734,635 + -0.8
1,734,741 + CA264_07495 0.18 -0.7

Or see this region's nucleotide sequence