Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04810 and CA264_04815 are separated by 298 nucleotides CA264_04815 and CA264_04820 are separated by 224 nucleotides
CA264_04810: CA264_04810 - CTP synthetase, at 1,112,855 to 1,114,468
_04810
CA264_04815: CA264_04815 - ATP-dependent protease subunit HslV, at 1,114,767 to 1,115,309
_04815
CA264_04820: CA264_04820 - deoxyhypusine synthase, at 1,115,534 to 1,116,505
_04820
Position (kb)
1114
1115
1116 Strain fitness (log2 ratio)
-1
0
1
2 at 1114.554 kb on - strand at 1114.559 kb on + strand at 1114.559 kb on + strand at 1114.560 kb on - strand at 1114.560 kb on - strand at 1114.568 kb on + strand at 1114.613 kb on + strand at 1114.614 kb on - strand at 1114.614 kb on - strand at 1114.614 kb on - strand at 1114.629 kb on + strand at 1114.629 kb on + strand at 1114.693 kb on - strand at 1114.699 kb on - strand at 1114.699 kb on - strand at 1114.714 kb on - strand at 1114.719 kb on - strand at 1114.736 kb on + strand at 1114.736 kb on + strand at 1114.737 kb on - strand at 1114.931 kb on + strand, within CA264_04815 at 1115.044 kb on - strand, within CA264_04815 at 1115.078 kb on + strand, within CA264_04815 at 1115.162 kb on + strand, within CA264_04815 at 1115.162 kb on + strand, within CA264_04815 at 1115.162 kb on + strand, within CA264_04815 at 1115.163 kb on - strand, within CA264_04815 at 1115.163 kb on - strand, within CA264_04815 at 1115.163 kb on - strand, within CA264_04815 at 1115.163 kb on - strand, within CA264_04815 at 1115.166 kb on + strand, within CA264_04815 at 1115.166 kb on + strand, within CA264_04815 at 1115.166 kb on + strand, within CA264_04815 at 1115.166 kb on + strand, within CA264_04815 at 1115.166 kb on + strand, within CA264_04815 at 1115.167 kb on - strand, within CA264_04815 at 1115.167 kb on - strand, within CA264_04815 at 1115.167 kb on - strand, within CA264_04815 at 1115.167 kb on - strand, within CA264_04815 at 1115.167 kb on - strand, within CA264_04815 at 1115.192 kb on - strand, within CA264_04815 at 1115.243 kb on + strand, within CA264_04815 at 1115.244 kb on - strand, within CA264_04815 at 1115.264 kb on + strand at 1115.264 kb on + strand at 1115.264 kb on + strand at 1115.265 kb on - strand at 1115.265 kb on - strand at 1115.268 kb on + strand at 1115.268 kb on + strand at 1115.270 kb on + strand at 1115.337 kb on - strand at 1115.337 kb on - strand at 1115.365 kb on + strand at 1115.373 kb on - strand at 1115.417 kb on - strand at 1115.445 kb on - strand at 1115.447 kb on - strand at 1115.454 kb on - strand at 1115.454 kb on - strand at 1115.460 kb on + strand at 1115.534 kb on - strand at 1115.534 kb on - strand at 1115.635 kb on + strand, within CA264_04820 at 1115.636 kb on - strand, within CA264_04820 at 1115.669 kb on - strand, within CA264_04820 at 1115.718 kb on + strand, within CA264_04820 at 1115.718 kb on + strand, within CA264_04820 at 1115.758 kb on + strand, within CA264_04820 at 1115.759 kb on - strand, within CA264_04820 at 1115.786 kb on + strand, within CA264_04820 at 1115.875 kb on + strand, within CA264_04820 at 1115.876 kb on - strand, within CA264_04820 at 1115.957 kb on + strand, within CA264_04820 at 1116.098 kb on - strand, within CA264_04820 at 1116.113 kb on + strand, within CA264_04820 at 1116.113 kb on + strand, within CA264_04820 at 1116.113 kb on + strand, within CA264_04820 at 1116.113 kb on + strand, within CA264_04820 at 1116.114 kb on - strand, within CA264_04820 at 1116.114 kb on - strand, within CA264_04820 at 1116.154 kb on + strand, within CA264_04820 at 1116.154 kb on + strand, within CA264_04820 at 1116.155 kb on - strand, within CA264_04820 at 1116.177 kb on - strand, within CA264_04820 at 1116.227 kb on - strand, within CA264_04820 at 1116.227 kb on - strand, within CA264_04820 at 1116.257 kb on - strand, within CA264_04820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 1,114,554 - -1.7 1,114,559 + -1.1 1,114,559 + -0.0 1,114,560 - +0.6 1,114,560 - -0.3 1,114,568 + -0.1 1,114,613 + +1.5 1,114,614 - -0.1 1,114,614 - +0.3 1,114,614 - +0.2 1,114,629 + +0.5 1,114,629 + +0.4 1,114,693 - +2.5 1,114,699 - +0.1 1,114,699 - +0.1 1,114,714 - -1.4 1,114,719 - -0.1 1,114,736 + +0.0 1,114,736 + -0.3 1,114,737 - +0.7 1,114,931 + CA264_04815 0.30 +0.3 1,115,044 - CA264_04815 0.51 +0.1 1,115,078 + CA264_04815 0.57 +1.7 1,115,162 + CA264_04815 0.73 -0.2 1,115,162 + CA264_04815 0.73 +1.1 1,115,162 + CA264_04815 0.73 +0.4 1,115,163 - CA264_04815 0.73 +0.8 1,115,163 - CA264_04815 0.73 -1.4 1,115,163 - CA264_04815 0.73 -0.4 1,115,163 - CA264_04815 0.73 +1.1 1,115,166 + CA264_04815 0.73 -0.2 1,115,166 + CA264_04815 0.73 -0.5 1,115,166 + CA264_04815 0.73 +0.3 1,115,166 + CA264_04815 0.73 +0.1 1,115,166 + CA264_04815 0.73 +1.0 1,115,167 - CA264_04815 0.74 -0.1 1,115,167 - CA264_04815 0.74 -0.5 1,115,167 - CA264_04815 0.74 -0.3 1,115,167 - CA264_04815 0.74 +0.3 1,115,167 - CA264_04815 0.74 -1.3 1,115,192 - CA264_04815 0.78 +0.8 1,115,243 + CA264_04815 0.88 +0.0 1,115,244 - CA264_04815 0.88 -0.2 1,115,264 + +0.2 1,115,264 + +0.2 1,115,264 + +0.1 1,115,265 - -0.3 1,115,265 - -0.5 1,115,268 + +0.1 1,115,268 + -0.7 1,115,270 + +0.8 1,115,337 - -0.4 1,115,337 - -0.7 1,115,365 + +0.0 1,115,373 - +0.2 1,115,417 - -0.1 1,115,445 - -0.8 1,115,447 - -0.3 1,115,454 - +0.1 1,115,454 - +0.8 1,115,460 + -0.4 1,115,534 - +0.1 1,115,534 - +0.5 1,115,635 + CA264_04820 0.10 +0.2 1,115,636 - CA264_04820 0.10 -0.2 1,115,669 - CA264_04820 0.14 +0.3 1,115,718 + CA264_04820 0.19 +1.2 1,115,718 + CA264_04820 0.19 +0.6 1,115,758 + CA264_04820 0.23 +1.3 1,115,759 - CA264_04820 0.23 -0.1 1,115,786 + CA264_04820 0.26 +0.4 1,115,875 + CA264_04820 0.35 +0.4 1,115,876 - CA264_04820 0.35 +0.4 1,115,957 + CA264_04820 0.44 +0.3 1,116,098 - CA264_04820 0.58 -0.2 1,116,113 + CA264_04820 0.60 +0.2 1,116,113 + CA264_04820 0.60 -0.2 1,116,113 + CA264_04820 0.60 +0.3 1,116,113 + CA264_04820 0.60 +1.5 1,116,114 - CA264_04820 0.60 +1.1 1,116,114 - CA264_04820 0.60 -0.2 1,116,154 + CA264_04820 0.64 +0.6 1,116,154 + CA264_04820 0.64 +0.6 1,116,155 - CA264_04820 0.64 -0.2 1,116,177 - CA264_04820 0.66 -0.4 1,116,227 - CA264_04820 0.71 +0.9 1,116,227 - CA264_04820 0.71 +1.2 1,116,257 - CA264_04820 0.74 +0.2
Or see this region's nucleotide sequence