Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04795 and CA264_04800 are separated by 6 nucleotides CA264_04800 and CA264_04805 are separated by 90 nucleotides CA264_04805 and CA264_04810 are separated by 31 nucleotides
CA264_04795: CA264_04795 - hypothetical protein, at 1,109,800 to 1,110,294
_04795
CA264_04800: CA264_04800 - hypothetical protein, at 1,110,301 to 1,110,903
_04800
CA264_04805: CA264_04805 - membrane protein insertase YidC, at 1,110,994 to 1,112,823
_04805
CA264_04810: CA264_04810 - CTP synthetase, at 1,112,855 to 1,114,468
_04810
Position (kb)
1110
1111
1112
1113 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1110.028 kb on + strand, within CA264_04795 at 1110.029 kb on - strand, within CA264_04795 at 1110.029 kb on - strand, within CA264_04795 at 1110.092 kb on + strand, within CA264_04795 at 1110.114 kb on - strand, within CA264_04795 at 1110.128 kb on + strand, within CA264_04795 at 1110.129 kb on - strand, within CA264_04795 at 1110.146 kb on + strand, within CA264_04795 at 1110.263 kb on - strand at 1110.263 kb on - strand at 1110.263 kb on - strand at 1110.281 kb on - strand at 1110.307 kb on - strand at 1110.307 kb on - strand at 1110.307 kb on - strand at 1110.350 kb on + strand at 1110.351 kb on - strand at 1110.351 kb on - strand at 1110.409 kb on + strand, within CA264_04800 at 1110.410 kb on - strand, within CA264_04800 at 1110.437 kb on + strand, within CA264_04800 at 1110.438 kb on - strand, within CA264_04800 at 1110.544 kb on - strand, within CA264_04800 at 1110.600 kb on - strand, within CA264_04800 at 1110.654 kb on - strand, within CA264_04800 at 1110.654 kb on - strand, within CA264_04800 at 1110.689 kb on + strand, within CA264_04800 at 1110.689 kb on + strand, within CA264_04800 at 1110.869 kb on + strand at 1110.877 kb on + strand at 1110.878 kb on - strand at 1110.903 kb on + strand at 1110.903 kb on + strand at 1110.903 kb on + strand at 1110.904 kb on - strand at 1110.907 kb on + strand at 1110.907 kb on + strand at 1110.907 kb on + strand at 1110.908 kb on - strand at 1110.908 kb on - strand at 1110.908 kb on - strand at 1110.915 kb on - strand at 1110.915 kb on - strand at 1110.937 kb on + strand at 1111.133 kb on - strand at 1112.848 kb on - strand at 1112.857 kb on - strand at 1112.867 kb on - strand at 1112.867 kb on - strand at 1112.875 kb on + strand at 1112.876 kb on - strand at 1112.876 kb on - strand at 1112.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 1,110,028 + CA264_04795 0.46 -0.7 1,110,029 - CA264_04795 0.46 +0.1 1,110,029 - CA264_04795 0.46 +0.0 1,110,092 + CA264_04795 0.59 -1.4 1,110,114 - CA264_04795 0.63 +0.2 1,110,128 + CA264_04795 0.66 -2.1 1,110,129 - CA264_04795 0.66 -1.5 1,110,146 + CA264_04795 0.70 -0.3 1,110,263 - -0.0 1,110,263 - -1.5 1,110,263 - -0.9 1,110,281 - -0.1 1,110,307 - -0.5 1,110,307 - -0.8 1,110,307 - +0.9 1,110,350 + +0.6 1,110,351 - +0.1 1,110,351 - -0.5 1,110,409 + CA264_04800 0.18 -1.5 1,110,410 - CA264_04800 0.18 +0.3 1,110,437 + CA264_04800 0.23 -2.9 1,110,438 - CA264_04800 0.23 +0.3 1,110,544 - CA264_04800 0.40 -0.9 1,110,600 - CA264_04800 0.50 -0.6 1,110,654 - CA264_04800 0.59 -0.5 1,110,654 - CA264_04800 0.59 +1.5 1,110,689 + CA264_04800 0.64 -1.3 1,110,689 + CA264_04800 0.64 -2.0 1,110,869 + -0.9 1,110,877 + -0.5 1,110,878 - -0.8 1,110,903 + -0.9 1,110,903 + -1.0 1,110,903 + -0.9 1,110,904 - +0.2 1,110,907 + -1.2 1,110,907 + -1.3 1,110,907 + -0.5 1,110,908 - +0.5 1,110,908 - +0.2 1,110,908 - -1.0 1,110,915 - -0.8 1,110,915 - -0.2 1,110,937 + -0.9 1,111,133 - -0.5 1,112,848 - +0.1 1,112,857 - +0.6 1,112,867 - -1.0 1,112,867 - +1.2 1,112,875 + -0.8 1,112,876 - -0.1 1,112,876 - +0.1 1,112,876 - +0.5
Or see this region's nucleotide sequence