Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04280 and CA264_04285 are separated by 77 nucleotides CA264_04285 and CA264_04290 are separated by 202 nucleotides CA264_04290 and CA264_04295 overlap by 4 nucleotides
CA264_04280: CA264_04280 - hypothetical protein, at 988,711 to 989,112
_04280
CA264_04285: CA264_04285 - hypothetical protein, at 989,190 to 989,453
_04285
CA264_04290: CA264_04290 - ABC transporter permease, at 989,656 to 990,741
_04290
CA264_04295: CA264_04295 - hypothetical protein, at 990,738 to 992,126
_04295
Position (kb) 989
990
991 Strain fitness (log2 ratio) -1
0
1
2
3 at 988.656 kb on + strand at 988.657 kb on - strand at 988.663 kb on - strand at 988.672 kb on - strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.681 kb on + strand at 988.681 kb on + strand at 988.682 kb on - strand at 988.683 kb on + strand at 988.683 kb on + strand at 988.684 kb on - strand at 988.684 kb on - strand at 988.684 kb on - strand at 988.686 kb on + strand at 988.687 kb on - strand at 988.693 kb on + strand at 988.706 kb on + strand at 988.707 kb on - strand at 988.707 kb on - strand at 988.711 kb on - strand at 988.842 kb on + strand, within CA264_04280 at 989.090 kb on - strand at 989.110 kb on + strand at 989.152 kb on + strand at 989.161 kb on - strand at 989.172 kb on + strand at 989.172 kb on + strand at 989.182 kb on - strand at 989.191 kb on + strand at 989.191 kb on + strand at 989.191 kb on + strand at 989.192 kb on - strand at 989.211 kb on + strand at 989.212 kb on - strand at 989.213 kb on + strand at 989.213 kb on + strand at 989.213 kb on + strand at 989.217 kb on + strand at 989.227 kb on + strand, within CA264_04285 at 989.336 kb on - strand, within CA264_04285 at 989.371 kb on - strand, within CA264_04285 at 989.388 kb on + strand, within CA264_04285 at 989.447 kb on + strand at 989.447 kb on + strand at 989.479 kb on + strand at 989.493 kb on + strand at 989.495 kb on + strand at 989.612 kb on + strand at 989.612 kb on + strand at 989.612 kb on + strand at 989.612 kb on + strand at 989.654 kb on + strand at 989.707 kb on - strand at 989.707 kb on - strand at 989.707 kb on - strand at 989.809 kb on - strand, within CA264_04290 at 989.821 kb on - strand, within CA264_04290 at 989.835 kb on + strand, within CA264_04290 at 989.886 kb on + strand, within CA264_04290 at 989.886 kb on + strand, within CA264_04290 at 990.127 kb on - strand, within CA264_04290 at 990.283 kb on + strand, within CA264_04290 at 990.308 kb on + strand, within CA264_04290 at 990.309 kb on - strand, within CA264_04290 at 990.320 kb on + strand, within CA264_04290 at 990.329 kb on + strand, within CA264_04290 at 990.330 kb on - strand, within CA264_04290 at 990.405 kb on - strand, within CA264_04290 at 990.439 kb on + strand, within CA264_04290 at 990.439 kb on + strand, within CA264_04290 at 990.730 kb on + strand at 990.757 kb on - strand at 990.757 kb on - strand at 990.779 kb on - strand at 990.814 kb on - strand at 990.814 kb on - strand at 990.829 kb on - strand at 990.968 kb on + strand, within CA264_04295 at 990.968 kb on + strand, within CA264_04295 at 991.053 kb on - strand, within CA264_04295 at 991.055 kb on - strand, within CA264_04295 at 991.055 kb on - strand, within CA264_04295 at 991.065 kb on + strand, within CA264_04295 at 991.105 kb on + strand, within CA264_04295 at 991.106 kb on - strand, within CA264_04295 at 991.106 kb on - strand, within CA264_04295 at 991.110 kb on + strand, within CA264_04295 at 991.111 kb on - strand, within CA264_04295 at 991.111 kb on - strand, within CA264_04295 at 991.111 kb on - strand, within CA264_04295 at 991.131 kb on - strand, within CA264_04295 at 991.133 kb on + strand, within CA264_04295 at 991.134 kb on - strand, within CA264_04295 at 991.134 kb on - strand, within CA264_04295 at 991.204 kb on + strand, within CA264_04295 at 991.362 kb on + strand, within CA264_04295 at 991.363 kb on - strand, within CA264_04295 at 991.367 kb on + strand, within CA264_04295 at 991.523 kb on - strand, within CA264_04295 at 991.570 kb on + strand, within CA264_04295 at 991.591 kb on - strand, within CA264_04295 at 991.591 kb on - strand, within CA264_04295 at 991.638 kb on - strand, within CA264_04295 at 991.667 kb on + strand, within CA264_04295 at 991.703 kb on - strand, within CA264_04295 at 991.710 kb on + strand, within CA264_04295
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 988,656 + -0.2 988,657 - +0.0 988,663 - -0.1 988,672 - -0.2 988,674 + +2.5 988,674 + +3.0 988,674 + +0.2 988,674 + -0.2 988,681 + +0.8 988,681 + +0.1 988,682 - +1.1 988,683 + +0.5 988,683 + -0.4 988,684 - -0.4 988,684 - -0.0 988,684 - +0.4 988,686 + +2.0 988,687 - +0.0 988,693 + +0.8 988,706 + +0.5 988,707 - +0.8 988,707 - +0.2 988,711 - +0.1 988,842 + CA264_04280 0.33 +1.0 989,090 - +2.1 989,110 + +1.6 989,152 + +1.0 989,161 - +0.3 989,172 + +0.5 989,172 + +1.4 989,182 - +0.2 989,191 + +0.9 989,191 + +0.3 989,191 + +1.0 989,192 - +1.0 989,211 + +0.6 989,212 - +1.6 989,213 + +1.6 989,213 + +2.2 989,213 + +2.0 989,217 + +2.9 989,227 + CA264_04285 0.14 +0.1 989,336 - CA264_04285 0.55 +0.5 989,371 - CA264_04285 0.69 +1.5 989,388 + CA264_04285 0.75 +1.2 989,447 + +1.3 989,447 + +1.7 989,479 + +1.4 989,493 + +0.6 989,495 + +0.8 989,612 + -0.8 989,612 + +1.0 989,612 + +0.9 989,612 + +1.5 989,654 + +1.1 989,707 - +0.9 989,707 - +1.2 989,707 - +0.2 989,809 - CA264_04290 0.14 +0.8 989,821 - CA264_04290 0.15 +1.5 989,835 + CA264_04290 0.16 +1.5 989,886 + CA264_04290 0.21 +1.3 989,886 + CA264_04290 0.21 +1.1 990,127 - CA264_04290 0.43 +1.3 990,283 + CA264_04290 0.58 +1.2 990,308 + CA264_04290 0.60 +1.1 990,309 - CA264_04290 0.60 +1.5 990,320 + CA264_04290 0.61 +1.3 990,329 + CA264_04290 0.62 -0.0 990,330 - CA264_04290 0.62 +1.3 990,405 - CA264_04290 0.69 +1.3 990,439 + CA264_04290 0.72 +1.8 990,439 + CA264_04290 0.72 +0.6 990,730 + +0.6 990,757 - -0.1 990,757 - -1.3 990,779 - +1.4 990,814 - +1.1 990,814 - +1.2 990,829 - +0.9 990,968 + CA264_04295 0.17 +1.9 990,968 + CA264_04295 0.17 +0.7 991,053 - CA264_04295 0.23 +1.2 991,055 - CA264_04295 0.23 +1.2 991,055 - CA264_04295 0.23 +0.5 991,065 + CA264_04295 0.24 +0.7 991,105 + CA264_04295 0.26 +0.9 991,106 - CA264_04295 0.26 +0.1 991,106 - CA264_04295 0.26 +1.0 991,110 + CA264_04295 0.27 +1.2 991,111 - CA264_04295 0.27 +1.2 991,111 - CA264_04295 0.27 +1.0 991,111 - CA264_04295 0.27 +1.1 991,131 - CA264_04295 0.28 +1.4 991,133 + CA264_04295 0.28 +0.9 991,134 - CA264_04295 0.29 +0.4 991,134 - CA264_04295 0.29 +0.8 991,204 + CA264_04295 0.34 +2.3 991,362 + CA264_04295 0.45 +1.4 991,363 - CA264_04295 0.45 +1.3 991,367 + CA264_04295 0.45 +1.0 991,523 - CA264_04295 0.57 +0.9 991,570 + CA264_04295 0.60 +1.8 991,591 - CA264_04295 0.61 +0.7 991,591 - CA264_04295 0.61 +1.3 991,638 - CA264_04295 0.65 +1.1 991,667 + CA264_04295 0.67 +1.3 991,703 - CA264_04295 0.69 +0.5 991,710 + CA264_04295 0.70 +0.9
Or see this region's nucleotide sequence