Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03455 and CA264_03460 are separated by 133 nucleotides CA264_03460 and CA264_03465 are separated by 82 nucleotides CA264_03465 and CA264_03470 are separated by 303 nucleotides
CA264_03455: CA264_03455 - hypothetical protein, at 806,623 to 807,945
_03455
CA264_03460: CA264_03460 - hypothetical protein, at 808,079 to 808,501
_03460
CA264_03465: CA264_03465 - hypothetical protein, at 808,584 to 809,066
_03465
CA264_03470: CA264_03470 - short-chain dehydrogenase, at 809,370 to 810,140
_03470
Position (kb) 808
809
810 Strain fitness (log2 ratio) -1
0
1 at 807.584 kb on + strand, within CA264_03455 at 807.585 kb on - strand, within CA264_03455 at 807.587 kb on - strand, within CA264_03455 at 807.603 kb on - strand, within CA264_03455 at 807.624 kb on + strand, within CA264_03455 at 807.625 kb on - strand, within CA264_03455 at 807.627 kb on - strand, within CA264_03455 at 807.627 kb on - strand, within CA264_03455 at 807.627 kb on - strand, within CA264_03455 at 807.630 kb on - strand, within CA264_03455 at 807.630 kb on - strand, within CA264_03455 at 807.630 kb on - strand, within CA264_03455 at 807.630 kb on - strand, within CA264_03455 at 807.633 kb on + strand, within CA264_03455 at 807.634 kb on - strand, within CA264_03455 at 807.677 kb on + strand, within CA264_03455 at 807.678 kb on - strand, within CA264_03455 at 807.678 kb on - strand, within CA264_03455 at 807.772 kb on + strand, within CA264_03455 at 807.800 kb on + strand, within CA264_03455 at 807.801 kb on - strand, within CA264_03455 at 807.801 kb on - strand, within CA264_03455 at 807.890 kb on - strand at 807.967 kb on - strand at 807.981 kb on - strand at 808.029 kb on + strand at 808.048 kb on + strand at 808.080 kb on + strand at 808.080 kb on + strand at 808.181 kb on + strand, within CA264_03460 at 808.182 kb on - strand, within CA264_03460 at 808.265 kb on - strand, within CA264_03460 at 808.323 kb on + strand, within CA264_03460 at 808.323 kb on + strand, within CA264_03460 at 808.324 kb on - strand, within CA264_03460 at 808.324 kb on - strand, within CA264_03460 at 808.351 kb on + strand, within CA264_03460 at 808.380 kb on + strand, within CA264_03460 at 808.380 kb on + strand, within CA264_03460 at 808.389 kb on - strand, within CA264_03460 at 808.439 kb on + strand, within CA264_03460 at 808.515 kb on - strand at 808.515 kb on - strand at 808.523 kb on + strand at 808.524 kb on - strand at 808.524 kb on - strand at 808.551 kb on + strand at 808.551 kb on + strand at 808.644 kb on + strand, within CA264_03465 at 808.645 kb on - strand, within CA264_03465 at 808.659 kb on - strand, within CA264_03465 at 808.706 kb on - strand, within CA264_03465 at 808.762 kb on - strand, within CA264_03465 at 808.817 kb on + strand, within CA264_03465 at 808.818 kb on - strand, within CA264_03465 at 808.821 kb on + strand, within CA264_03465 at 808.855 kb on + strand, within CA264_03465 at 808.956 kb on - strand, within CA264_03465 at 808.985 kb on + strand, within CA264_03465 at 809.068 kb on + strand at 809.068 kb on + strand at 809.069 kb on - strand at 809.072 kb on + strand at 809.072 kb on + strand at 809.190 kb on + strand at 809.215 kb on + strand at 809.305 kb on + strand at 809.316 kb on + strand at 809.316 kb on + strand at 809.338 kb on + strand at 809.383 kb on + strand at 809.401 kb on + strand at 809.589 kb on + strand, within CA264_03470 at 809.605 kb on + strand, within CA264_03470 at 809.683 kb on - strand, within CA264_03470 at 809.709 kb on + strand, within CA264_03470 at 809.710 kb on - strand, within CA264_03470 at 809.765 kb on - strand, within CA264_03470 at 809.904 kb on + strand, within CA264_03470
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 807,584 + CA264_03455 0.73 +0.8 807,585 - CA264_03455 0.73 +0.2 807,587 - CA264_03455 0.73 -0.2 807,603 - CA264_03455 0.74 -0.0 807,624 + CA264_03455 0.76 -0.5 807,625 - CA264_03455 0.76 +0.4 807,627 - CA264_03455 0.76 -0.6 807,627 - CA264_03455 0.76 -0.8 807,627 - CA264_03455 0.76 +1.5 807,630 - CA264_03455 0.76 +0.5 807,630 - CA264_03455 0.76 -0.1 807,630 - CA264_03455 0.76 -1.0 807,630 - CA264_03455 0.76 +1.1 807,633 + CA264_03455 0.76 -0.0 807,634 - CA264_03455 0.76 +0.2 807,677 + CA264_03455 0.80 -0.3 807,678 - CA264_03455 0.80 +0.3 807,678 - CA264_03455 0.80 +0.6 807,772 + CA264_03455 0.87 +0.3 807,800 + CA264_03455 0.89 +0.1 807,801 - CA264_03455 0.89 -0.2 807,801 - CA264_03455 0.89 +0.1 807,890 - -0.4 807,967 - +0.8 807,981 - +0.3 808,029 + -0.2 808,048 + +0.3 808,080 + +0.1 808,080 + -0.3 808,181 + CA264_03460 0.24 -0.1 808,182 - CA264_03460 0.24 -0.3 808,265 - CA264_03460 0.44 -0.1 808,323 + CA264_03460 0.58 -1.3 808,323 + CA264_03460 0.58 +0.1 808,324 - CA264_03460 0.58 -0.4 808,324 - CA264_03460 0.58 -0.9 808,351 + CA264_03460 0.64 +0.7 808,380 + CA264_03460 0.71 -0.0 808,380 + CA264_03460 0.71 -0.7 808,389 - CA264_03460 0.73 -1.0 808,439 + CA264_03460 0.85 -0.9 808,515 - -0.2 808,515 - -0.6 808,523 + -0.7 808,524 - +0.3 808,524 - +0.4 808,551 + -0.7 808,551 + +0.5 808,644 + CA264_03465 0.12 -0.9 808,645 - CA264_03465 0.13 +0.5 808,659 - CA264_03465 0.16 -0.9 808,706 - CA264_03465 0.25 +0.2 808,762 - CA264_03465 0.37 +0.4 808,817 + CA264_03465 0.48 +0.9 808,818 - CA264_03465 0.48 +1.4 808,821 + CA264_03465 0.49 +1.3 808,855 + CA264_03465 0.56 -0.8 808,956 - CA264_03465 0.77 +0.8 808,985 + CA264_03465 0.83 -1.1 809,068 + -0.5 809,068 + +0.8 809,069 - +1.0 809,072 + +1.1 809,072 + -0.2 809,190 + +0.3 809,215 + +0.4 809,305 + -0.1 809,316 + +0.1 809,316 + -0.4 809,338 + -0.5 809,383 + -0.4 809,401 + +0.4 809,589 + CA264_03470 0.28 +0.3 809,605 + CA264_03470 0.30 -0.9 809,683 - CA264_03470 0.41 +0.1 809,709 + CA264_03470 0.44 -0.5 809,710 - CA264_03470 0.44 -0.7 809,765 - CA264_03470 0.51 -1.0 809,904 + CA264_03470 0.69 +0.1
Or see this region's nucleotide sequence