Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02035 and CA264_02040 are separated by 272 nucleotides CA264_02040 and CA264_02045 are separated by 312 nucleotides CA264_02045 and CA264_02050 are separated by 103 nucleotides
CA264_02035: CA264_02035 - hypothetical protein, at 468,657 to 469,526
_02035
CA264_02040: CA264_02040 - zinc carboxypeptidase, at 469,799 to 472,351
_02040
CA264_02045: CA264_02045 - DNA damage-inducible protein DinB, at 472,664 to 473,197
_02045
CA264_02050: CA264_02050 - anion transporter, at 473,301 to 474,716
_02050
Position (kb) 469
470
471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2 at 468.809 kb on - strand, within CA264_02035 at 468.869 kb on - strand, within CA264_02035 at 468.931 kb on - strand, within CA264_02035 at 469.072 kb on + strand, within CA264_02035 at 469.135 kb on + strand, within CA264_02035 at 469.136 kb on - strand, within CA264_02035 at 469.158 kb on - strand, within CA264_02035 at 469.158 kb on - strand, within CA264_02035 at 469.186 kb on - strand, within CA264_02035 at 469.222 kb on + strand, within CA264_02035 at 469.223 kb on - strand, within CA264_02035 at 469.377 kb on + strand, within CA264_02035 at 469.377 kb on + strand, within CA264_02035 at 469.377 kb on + strand, within CA264_02035 at 469.377 kb on + strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.378 kb on - strand, within CA264_02035 at 469.430 kb on + strand, within CA264_02035 at 469.430 kb on + strand, within CA264_02035 at 469.431 kb on - strand, within CA264_02035 at 469.481 kb on + strand at 469.481 kb on + strand at 469.481 kb on + strand at 469.481 kb on + strand at 469.482 kb on - strand at 469.482 kb on - strand at 469.482 kb on - strand at 469.482 kb on - strand at 469.482 kb on - strand at 469.483 kb on + strand at 469.484 kb on - strand at 469.488 kb on + strand at 469.526 kb on + strand at 469.526 kb on + strand at 469.526 kb on + strand at 469.527 kb on - strand at 469.560 kb on + strand at 469.560 kb on + strand at 469.560 kb on + strand at 469.561 kb on - strand at 469.561 kb on - strand at 469.699 kb on + strand at 469.759 kb on + strand at 469.759 kb on + strand at 469.763 kb on - strand at 469.773 kb on + strand at 469.774 kb on - strand at 469.775 kb on + strand at 469.775 kb on + strand at 469.776 kb on - strand at 469.776 kb on - strand at 469.776 kb on - strand at 469.781 kb on + strand at 469.781 kb on + strand at 469.786 kb on + strand at 469.787 kb on - strand at 469.792 kb on + strand at 469.793 kb on - strand at 469.793 kb on - strand at 469.793 kb on - strand at 469.794 kb on + strand at 469.795 kb on - strand at 469.984 kb on + strand at 469.984 kb on + strand at 470.001 kb on - strand at 470.039 kb on + strand at 470.159 kb on + strand, within CA264_02040 at 470.160 kb on - strand, within CA264_02040 at 470.213 kb on + strand, within CA264_02040 at 470.246 kb on - strand, within CA264_02040 at 470.324 kb on + strand, within CA264_02040 at 470.324 kb on + strand, within CA264_02040 at 470.325 kb on - strand, within CA264_02040 at 470.414 kb on + strand, within CA264_02040 at 470.415 kb on - strand, within CA264_02040 at 470.415 kb on - strand, within CA264_02040 at 470.480 kb on + strand, within CA264_02040 at 470.481 kb on - strand, within CA264_02040 at 470.481 kb on - strand, within CA264_02040 at 470.541 kb on - strand, within CA264_02040 at 470.578 kb on + strand, within CA264_02040 at 470.580 kb on + strand, within CA264_02040 at 470.633 kb on + strand, within CA264_02040 at 470.633 kb on + strand, within CA264_02040 at 470.634 kb on - strand, within CA264_02040 at 470.657 kb on + strand, within CA264_02040 at 470.658 kb on - strand, within CA264_02040 at 470.718 kb on - strand, within CA264_02040 at 470.718 kb on - strand, within CA264_02040 at 470.734 kb on + strand, within CA264_02040 at 470.735 kb on - strand, within CA264_02040 at 470.741 kb on + strand, within CA264_02040 at 470.741 kb on + strand, within CA264_02040 at 470.741 kb on + strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.742 kb on - strand, within CA264_02040 at 470.860 kb on + strand, within CA264_02040 at 470.906 kb on + strand, within CA264_02040 at 470.907 kb on - strand, within CA264_02040 at 470.939 kb on + strand, within CA264_02040 at 470.940 kb on - strand, within CA264_02040 at 471.093 kb on + strand, within CA264_02040 at 471.128 kb on + strand, within CA264_02040 at 471.128 kb on + strand, within CA264_02040 at 471.129 kb on - strand, within CA264_02040 at 471.129 kb on - strand, within CA264_02040 at 471.197 kb on + strand, within CA264_02040 at 471.198 kb on - strand, within CA264_02040 at 471.230 kb on + strand, within CA264_02040 at 471.245 kb on + strand, within CA264_02040 at 471.313 kb on - strand, within CA264_02040 at 471.323 kb on + strand, within CA264_02040 at 471.324 kb on - strand, within CA264_02040 at 471.368 kb on - strand, within CA264_02040 at 471.441 kb on - strand, within CA264_02040 at 471.533 kb on - strand, within CA264_02040 at 471.631 kb on + strand, within CA264_02040 at 471.672 kb on + strand, within CA264_02040 at 471.673 kb on - strand, within CA264_02040 at 471.673 kb on - strand, within CA264_02040 at 471.852 kb on + strand, within CA264_02040 at 471.986 kb on + strand, within CA264_02040 at 471.987 kb on - strand, within CA264_02040 at 472.091 kb on + strand, within CA264_02040 at 472.091 kb on + strand, within CA264_02040 at 472.092 kb on - strand, within CA264_02040 at 472.092 kb on - strand, within CA264_02040 at 472.260 kb on + strand at 472.261 kb on - strand at 472.265 kb on + strand at 472.266 kb on - strand at 472.342 kb on - strand at 472.369 kb on - strand at 472.607 kb on - strand at 472.607 kb on - strand at 472.609 kb on - strand at 472.609 kb on - strand at 472.609 kb on - strand at 472.611 kb on + strand at 472.612 kb on - strand at 472.613 kb on + strand at 472.613 kb on + strand at 472.614 kb on - strand at 472.614 kb on - strand at 472.614 kb on - strand at 472.614 kb on - strand at 472.614 kb on - strand at 472.616 kb on + strand at 472.618 kb on + strand at 472.619 kb on - strand at 472.619 kb on - strand at 472.643 kb on + strand at 472.643 kb on + strand at 472.644 kb on - strand at 472.646 kb on - strand at 472.656 kb on - strand at 472.656 kb on - strand at 472.663 kb on + strand at 472.664 kb on - strand at 472.679 kb on - strand at 472.680 kb on + strand at 472.684 kb on + strand at 472.685 kb on - strand at 472.685 kb on - strand at 472.727 kb on + strand, within CA264_02045 at 472.728 kb on - strand, within CA264_02045 at 472.756 kb on + strand, within CA264_02045 at 472.778 kb on + strand, within CA264_02045 at 472.828 kb on - strand, within CA264_02045 at 472.856 kb on - strand, within CA264_02045 at 472.857 kb on + strand, within CA264_02045 at 472.858 kb on - strand, within CA264_02045 at 472.858 kb on - strand, within CA264_02045 at 473.009 kb on - strand, within CA264_02045 at 473.022 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.113 kb on - strand, within CA264_02045 at 473.132 kb on + strand, within CA264_02045 at 473.133 kb on - strand, within CA264_02045 at 473.134 kb on + strand, within CA264_02045 at 473.134 kb on + strand, within CA264_02045 at 473.135 kb on - strand, within CA264_02045 at 473.135 kb on - strand, within CA264_02045 at 473.139 kb on + strand, within CA264_02045 at 473.140 kb on - strand, within CA264_02045 at 473.200 kb on + strand at 473.200 kb on + strand at 473.201 kb on - strand at 473.201 kb on - strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.204 kb on + strand at 473.205 kb on - strand at 473.206 kb on + strand at 473.206 kb on + strand at 473.207 kb on - strand at 473.207 kb on - strand at 473.207 kb on - strand at 473.207 kb on - strand at 473.210 kb on + strand at 473.210 kb on + strand at 473.211 kb on - strand at 473.211 kb on - strand at 473.212 kb on + strand at 473.213 kb on - strand at 473.243 kb on + strand at 473.262 kb on + strand at 473.263 kb on - strand at 473.263 kb on - strand at 473.266 kb on + strand at 473.273 kb on + strand at 473.273 kb on + strand at 473.273 kb on + strand at 473.274 kb on - strand at 473.274 kb on - strand at 473.274 kb on - strand at 473.277 kb on + strand at 473.277 kb on + strand at 473.342 kb on + strand at 473.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 468,809 - CA264_02035 0.17 -0.5 468,869 - CA264_02035 0.24 -0.1 468,931 - CA264_02035 0.31 +0.3 469,072 + CA264_02035 0.48 -1.2 469,135 + CA264_02035 0.55 +0.2 469,136 - CA264_02035 0.55 -0.6 469,158 - CA264_02035 0.58 +0.9 469,158 - CA264_02035 0.58 -1.9 469,186 - CA264_02035 0.61 -0.2 469,222 + CA264_02035 0.65 -0.6 469,223 - CA264_02035 0.65 -0.0 469,377 + CA264_02035 0.83 -0.3 469,377 + CA264_02035 0.83 +0.6 469,377 + CA264_02035 0.83 +0.0 469,377 + CA264_02035 0.83 +0.4 469,378 - CA264_02035 0.83 +0.5 469,378 - CA264_02035 0.83 +0.3 469,378 - CA264_02035 0.83 -0.1 469,378 - CA264_02035 0.83 +1.7 469,378 - CA264_02035 0.83 -0.0 469,430 + CA264_02035 0.89 -1.3 469,430 + CA264_02035 0.89 +1.3 469,431 - CA264_02035 0.89 +0.4 469,481 + +0.1 469,481 + -0.3 469,481 + -1.0 469,481 + -1.1 469,482 - +0.0 469,482 - -0.3 469,482 - +0.2 469,482 - +0.2 469,482 - -0.6 469,483 + -0.4 469,484 - -0.3 469,488 + +0.5 469,526 + -0.4 469,526 + -0.1 469,526 + -0.4 469,527 - -1.6 469,560 + -0.9 469,560 + -0.6 469,560 + +0.1 469,561 - -0.3 469,561 - -1.6 469,699 + -0.3 469,759 + -0.3 469,759 + -0.4 469,763 - +0.4 469,773 + +0.4 469,774 - -0.5 469,775 + -0.5 469,775 + -0.6 469,776 - -0.5 469,776 - -1.2 469,776 - +0.3 469,781 + -0.5 469,781 + -0.2 469,786 + -1.8 469,787 - +0.6 469,792 + +0.8 469,793 - -0.4 469,793 - +0.0 469,793 - -0.2 469,794 + +0.2 469,795 - -0.4 469,984 + +0.6 469,984 + +1.2 470,001 - +0.1 470,039 + +0.7 470,159 + CA264_02040 0.14 +0.0 470,160 - CA264_02040 0.14 +0.7 470,213 + CA264_02040 0.16 +0.1 470,246 - CA264_02040 0.18 +1.1 470,324 + CA264_02040 0.21 -0.1 470,324 + CA264_02040 0.21 -1.3 470,325 - CA264_02040 0.21 +0.3 470,414 + CA264_02040 0.24 +1.3 470,415 - CA264_02040 0.24 -0.0 470,415 - CA264_02040 0.24 -0.6 470,480 + CA264_02040 0.27 -0.3 470,481 - CA264_02040 0.27 +0.3 470,481 - CA264_02040 0.27 +0.0 470,541 - CA264_02040 0.29 -1.0 470,578 + CA264_02040 0.31 -0.8 470,580 + CA264_02040 0.31 -0.5 470,633 + CA264_02040 0.33 -1.2 470,633 + CA264_02040 0.33 -1.0 470,634 - CA264_02040 0.33 -0.1 470,657 + CA264_02040 0.34 +1.2 470,658 - CA264_02040 0.34 -0.3 470,718 - CA264_02040 0.36 -1.0 470,718 - CA264_02040 0.36 -0.3 470,734 + CA264_02040 0.37 +0.9 470,735 - CA264_02040 0.37 -0.7 470,741 + CA264_02040 0.37 +0.9 470,741 + CA264_02040 0.37 +0.7 470,741 + CA264_02040 0.37 +0.4 470,742 - CA264_02040 0.37 +0.2 470,742 - CA264_02040 0.37 -0.7 470,742 - CA264_02040 0.37 +0.7 470,742 - CA264_02040 0.37 -0.2 470,742 - CA264_02040 0.37 -1.4 470,860 + CA264_02040 0.42 -0.5 470,906 + CA264_02040 0.43 -2.2 470,907 - CA264_02040 0.43 -1.0 470,939 + CA264_02040 0.45 -0.7 470,940 - CA264_02040 0.45 -0.8 471,093 + CA264_02040 0.51 +0.3 471,128 + CA264_02040 0.52 -0.4 471,128 + CA264_02040 0.52 +0.3 471,129 - CA264_02040 0.52 -0.7 471,129 - CA264_02040 0.52 -0.3 471,197 + CA264_02040 0.55 -0.1 471,198 - CA264_02040 0.55 -0.3 471,230 + CA264_02040 0.56 +0.1 471,245 + CA264_02040 0.57 -0.3 471,313 - CA264_02040 0.59 -0.1 471,323 + CA264_02040 0.60 +0.7 471,324 - CA264_02040 0.60 -0.2 471,368 - CA264_02040 0.61 -0.4 471,441 - CA264_02040 0.64 -0.3 471,533 - CA264_02040 0.68 +0.7 471,631 + CA264_02040 0.72 -0.6 471,672 + CA264_02040 0.73 +0.0 471,673 - CA264_02040 0.73 -0.7 471,673 - CA264_02040 0.73 -0.2 471,852 + CA264_02040 0.80 -0.0 471,986 + CA264_02040 0.86 +0.6 471,987 - CA264_02040 0.86 -0.7 472,091 + CA264_02040 0.90 -0.6 472,091 + CA264_02040 0.90 -0.4 472,092 - CA264_02040 0.90 -0.6 472,092 - CA264_02040 0.90 -0.7 472,260 + -0.4 472,261 - -0.6 472,265 + -0.6 472,266 - -0.8 472,342 - +2.6 472,369 - +0.1 472,607 - +0.4 472,607 - -0.1 472,609 - -1.9 472,609 - +0.4 472,609 - +2.0 472,611 + -0.3 472,612 - -0.6 472,613 + -0.1 472,613 + -0.7 472,614 - -0.4 472,614 - +1.9 472,614 - -0.5 472,614 - +0.5 472,614 - -0.9 472,616 + -0.2 472,618 + -0.1 472,619 - +0.4 472,619 - -0.5 472,643 + +0.4 472,643 + +0.4 472,644 - -0.1 472,646 - +0.4 472,656 - -0.8 472,656 - +0.3 472,663 + +0.9 472,664 - -0.4 472,679 - +0.5 472,680 + +0.4 472,684 + -0.1 472,685 - -0.4 472,685 - +0.7 472,727 + CA264_02045 0.12 +0.4 472,728 - CA264_02045 0.12 +0.4 472,756 + CA264_02045 0.17 -0.4 472,778 + CA264_02045 0.21 -0.1 472,828 - CA264_02045 0.31 +0.7 472,856 - CA264_02045 0.36 +1.0 472,857 + CA264_02045 0.36 +0.3 472,858 - CA264_02045 0.36 +0.2 472,858 - CA264_02045 0.36 -0.1 473,009 - CA264_02045 0.65 +0.3 473,022 - CA264_02045 0.67 +0.4 473,113 - CA264_02045 0.84 -0.8 473,113 - CA264_02045 0.84 -0.3 473,113 - CA264_02045 0.84 +0.3 473,113 - CA264_02045 0.84 -0.5 473,113 - CA264_02045 0.84 -0.0 473,132 + CA264_02045 0.88 +0.2 473,133 - CA264_02045 0.88 -0.3 473,134 + CA264_02045 0.88 -0.0 473,134 + CA264_02045 0.88 +0.1 473,135 - CA264_02045 0.88 -0.5 473,135 - CA264_02045 0.88 -0.1 473,139 + CA264_02045 0.89 -0.5 473,140 - CA264_02045 0.89 -1.3 473,200 + +0.1 473,200 + +1.3 473,201 - -0.2 473,201 - +0.0 473,204 + -0.1 473,204 + -0.2 473,204 + +0.4 473,204 + -0.4 473,204 + -1.9 473,204 + -0.3 473,205 - -0.4 473,206 + +0.7 473,206 + +0.8 473,207 - +0.7 473,207 - -0.9 473,207 - -1.0 473,207 - +0.7 473,210 + -0.2 473,210 + +1.4 473,211 - +0.0 473,211 - -0.3 473,212 + -0.5 473,213 - -0.2 473,243 + +0.4 473,262 + +0.7 473,263 - -1.7 473,263 - +0.2 473,266 + +0.1 473,273 + +0.2 473,273 + +1.1 473,273 + -0.6 473,274 - +0.7 473,274 - +0.1 473,274 - +0.3 473,277 + +0.5 473,277 + +0.2 473,342 + -0.1 473,343 - +0.9
Or see this region's nucleotide sequence