Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01910 and CA264_01915 are separated by 292 nucleotides CA264_01915 and CA264_01920 overlap by 4 nucleotides CA264_01920 and CA264_01925 are separated by 347 nucleotides CA264_01925 and CA264_01930 are separated by 11 nucleotides
CA264_01910: CA264_01910 - transposase, at 445,924 to 446,472
_01910
CA264_01915: CA264_01915 - hypothetical protein, at 446,765 to 447,676
_01915
CA264_01920: CA264_01920 - hypothetical protein, at 447,673 to 448,083
_01920
CA264_01925: CA264_01925 - tRNA-Leu, at 448,431 to 448,514
_01925
CA264_01930: CA264_01930 - Fe-S protein assembly co-chaperone HscB, at 448,526 to 449,062
_01930
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 445.769 kb on + strand at 445.769 kb on + strand at 445.769 kb on + strand at 445.769 kb on + strand at 445.769 kb on + strand at 445.769 kb on + strand at 445.803 kb on + strand at 445.803 kb on + strand at 445.803 kb on + strand at 445.803 kb on + strand at 445.803 kb on + strand at 445.804 kb on - strand at 445.804 kb on - strand at 445.804 kb on - strand at 445.853 kb on - strand at 445.863 kb on + strand at 445.901 kb on - strand at 445.910 kb on + strand at 445.910 kb on + strand at 445.910 kb on + strand at 445.910 kb on + strand at 445.911 kb on - strand at 445.939 kb on - strand at 445.941 kb on + strand at 445.942 kb on - strand at 445.967 kb on + strand at 445.985 kb on + strand, within CA264_01910 at 445.985 kb on + strand, within CA264_01910 at 445.986 kb on - strand, within CA264_01910 at 445.989 kb on + strand, within CA264_01910 at 445.990 kb on - strand, within CA264_01910 at 446.041 kb on - strand, within CA264_01910 at 446.042 kb on + strand, within CA264_01910 at 446.042 kb on + strand, within CA264_01910 at 446.043 kb on - strand, within CA264_01910 at 446.043 kb on - strand, within CA264_01910 at 446.043 kb on - strand, within CA264_01910 at 446.077 kb on - strand, within CA264_01910 at 446.227 kb on - strand, within CA264_01910 at 446.227 kb on - strand, within CA264_01910 at 446.307 kb on + strand, within CA264_01910 at 446.352 kb on + strand, within CA264_01910 at 446.353 kb on - strand, within CA264_01910 at 446.353 kb on - strand, within CA264_01910 at 446.378 kb on + strand, within CA264_01910 at 446.379 kb on - strand, within CA264_01910 at 446.410 kb on + strand, within CA264_01910 at 446.410 kb on + strand, within CA264_01910 at 446.411 kb on - strand, within CA264_01910 at 446.432 kb on + strand at 446.435 kb on - strand at 446.460 kb on - strand at 446.472 kb on + strand at 446.473 kb on - strand at 446.479 kb on + strand at 446.479 kb on + strand at 446.480 kb on - strand at 446.480 kb on - strand at 446.482 kb on + strand at 446.483 kb on - strand at 446.483 kb on - strand at 446.483 kb on - strand at 446.490 kb on - strand at 446.500 kb on + strand at 446.500 kb on + strand at 446.501 kb on - strand at 446.509 kb on - strand at 446.538 kb on + strand at 446.538 kb on + strand at 446.539 kb on - strand at 446.545 kb on + strand at 446.549 kb on + strand at 446.550 kb on - strand at 446.550 kb on - strand at 446.695 kb on - strand at 446.695 kb on - strand at 446.716 kb on + strand at 446.716 kb on + strand at 446.716 kb on + strand at 446.717 kb on - strand at 446.723 kb on - strand at 446.820 kb on + strand at 446.877 kb on + strand, within CA264_01915 at 446.941 kb on + strand, within CA264_01915 at 446.969 kb on + strand, within CA264_01915 at 447.052 kb on + strand, within CA264_01915 at 447.121 kb on - strand, within CA264_01915 at 447.121 kb on - strand, within CA264_01915 at 447.132 kb on - strand, within CA264_01915 at 447.153 kb on - strand, within CA264_01915 at 447.157 kb on + strand, within CA264_01915 at 447.227 kb on + strand, within CA264_01915 at 447.230 kb on - strand, within CA264_01915 at 447.238 kb on + strand, within CA264_01915 at 447.252 kb on - strand, within CA264_01915 at 447.270 kb on - strand, within CA264_01915 at 447.434 kb on + strand, within CA264_01915 at 447.447 kb on - strand, within CA264_01915 at 447.447 kb on - strand, within CA264_01915 at 447.447 kb on - strand, within CA264_01915 at 447.480 kb on - strand, within CA264_01915 at 447.522 kb on - strand, within CA264_01915 at 447.542 kb on + strand, within CA264_01915 at 447.592 kb on + strand at 447.592 kb on + strand at 447.593 kb on - strand at 447.648 kb on - strand at 447.648 kb on - strand at 447.661 kb on + strand at 447.662 kb on - strand at 447.676 kb on + strand at 447.677 kb on - strand at 447.678 kb on + strand at 447.679 kb on - strand at 447.679 kb on - strand at 447.698 kb on - strand at 447.702 kb on - strand at 447.702 kb on - strand at 447.706 kb on + strand at 447.706 kb on + strand at 447.706 kb on + strand at 447.726 kb on + strand, within CA264_01920 at 447.726 kb on + strand, within CA264_01920 at 447.727 kb on - strand, within CA264_01920 at 447.727 kb on - strand, within CA264_01920 at 447.732 kb on + strand, within CA264_01920 at 447.732 kb on + strand, within CA264_01920 at 447.733 kb on - strand, within CA264_01920 at 447.736 kb on + strand, within CA264_01920 at 447.737 kb on - strand, within CA264_01920 at 447.743 kb on - strand, within CA264_01920 at 447.744 kb on + strand, within CA264_01920 at 447.784 kb on - strand, within CA264_01920 at 447.808 kb on - strand, within CA264_01920 at 447.818 kb on - strand, within CA264_01920 at 447.916 kb on + strand, within CA264_01920 at 447.919 kb on - strand, within CA264_01920 at 447.958 kb on + strand, within CA264_01920 at 447.979 kb on - strand, within CA264_01920 at 448.067 kb on - strand at 448.067 kb on - strand at 448.067 kb on - strand at 448.111 kb on + strand at 448.120 kb on + strand at 448.120 kb on + strand at 448.163 kb on - strand at 448.164 kb on + strand at 448.164 kb on + strand at 448.164 kb on + strand at 448.164 kb on + strand at 448.165 kb on - strand at 448.168 kb on - strand at 448.233 kb on + strand at 448.234 kb on - strand at 448.288 kb on - strand at 448.334 kb on + strand at 448.340 kb on + strand at 448.340 kb on + strand at 448.393 kb on + strand at 448.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 445,769 + -0.4 445,769 + +0.4 445,769 + -2.0 445,769 + +0.1 445,769 + -0.2 445,769 + -0.7 445,803 + +0.0 445,803 + -0.2 445,803 + -0.3 445,803 + -0.4 445,803 + +0.1 445,804 - -1.6 445,804 - +0.7 445,804 - -0.5 445,853 - +0.2 445,863 + -0.2 445,901 - +0.4 445,910 + -0.2 445,910 + +1.6 445,910 + -1.5 445,910 + -0.7 445,911 - +0.2 445,939 - -0.3 445,941 + -0.1 445,942 - -1.2 445,967 + +1.0 445,985 + CA264_01910 0.11 +0.4 445,985 + CA264_01910 0.11 -0.7 445,986 - CA264_01910 0.11 -0.6 445,989 + CA264_01910 0.12 +1.0 445,990 - CA264_01910 0.12 -0.4 446,041 - CA264_01910 0.21 +1.3 446,042 + CA264_01910 0.21 -0.9 446,042 + CA264_01910 0.21 +1.0 446,043 - CA264_01910 0.22 -0.9 446,043 - CA264_01910 0.22 +0.5 446,043 - CA264_01910 0.22 +1.3 446,077 - CA264_01910 0.28 -0.7 446,227 - CA264_01910 0.55 -0.6 446,227 - CA264_01910 0.55 +0.4 446,307 + CA264_01910 0.70 -0.5 446,352 + CA264_01910 0.78 +2.3 446,353 - CA264_01910 0.78 +0.3 446,353 - CA264_01910 0.78 +0.0 446,378 + CA264_01910 0.83 -0.0 446,379 - CA264_01910 0.83 +0.4 446,410 + CA264_01910 0.89 -0.0 446,410 + CA264_01910 0.89 -0.1 446,411 - CA264_01910 0.89 +0.4 446,432 + +0.2 446,435 - -0.0 446,460 - -1.0 446,472 + +0.6 446,473 - +0.2 446,479 + -1.4 446,479 + -0.2 446,480 - -0.5 446,480 - +0.1 446,482 + -0.3 446,483 - +0.0 446,483 - -0.4 446,483 - -0.2 446,490 - -0.6 446,500 + -0.7 446,500 + -0.2 446,501 - -0.7 446,509 - -0.1 446,538 + -1.6 446,538 + +1.5 446,539 - +0.1 446,545 + -0.8 446,549 + -0.3 446,550 - -2.3 446,550 - -0.2 446,695 - -0.7 446,695 - -0.4 446,716 + -0.5 446,716 + +1.0 446,716 + -1.6 446,717 - +0.6 446,723 - +0.7 446,820 + +0.2 446,877 + CA264_01915 0.12 +0.8 446,941 + CA264_01915 0.19 -0.2 446,969 + CA264_01915 0.22 -0.0 447,052 + CA264_01915 0.31 -0.6 447,121 - CA264_01915 0.39 -0.6 447,121 - CA264_01915 0.39 -0.2 447,132 - CA264_01915 0.40 +0.1 447,153 - CA264_01915 0.43 -0.9 447,157 + CA264_01915 0.43 -0.1 447,227 + CA264_01915 0.51 +0.5 447,230 - CA264_01915 0.51 +0.2 447,238 + CA264_01915 0.52 +0.6 447,252 - CA264_01915 0.53 -0.2 447,270 - CA264_01915 0.55 -0.1 447,434 + CA264_01915 0.73 -0.2 447,447 - CA264_01915 0.75 +0.5 447,447 - CA264_01915 0.75 +0.0 447,447 - CA264_01915 0.75 -1.2 447,480 - CA264_01915 0.78 -0.6 447,522 - CA264_01915 0.83 -0.3 447,542 + CA264_01915 0.85 +0.1 447,592 + +0.1 447,592 + +0.5 447,593 - +0.3 447,648 - -0.2 447,648 - +1.2 447,661 + -0.6 447,662 - +1.2 447,676 + +0.1 447,677 - -0.2 447,678 + -0.5 447,679 - -0.5 447,679 - -0.4 447,698 - -0.8 447,702 - -0.2 447,702 - -0.8 447,706 + -0.2 447,706 + -0.3 447,706 + -0.3 447,726 + CA264_01920 0.13 +0.3 447,726 + CA264_01920 0.13 -0.1 447,727 - CA264_01920 0.13 -0.2 447,727 - CA264_01920 0.13 -0.1 447,732 + CA264_01920 0.14 -0.1 447,732 + CA264_01920 0.14 -0.6 447,733 - CA264_01920 0.15 +1.1 447,736 + CA264_01920 0.15 -0.1 447,737 - CA264_01920 0.16 -0.6 447,743 - CA264_01920 0.17 +0.8 447,744 + CA264_01920 0.17 +0.2 447,784 - CA264_01920 0.27 -0.0 447,808 - CA264_01920 0.33 +0.6 447,818 - CA264_01920 0.35 -1.1 447,916 + CA264_01920 0.59 -0.2 447,919 - CA264_01920 0.60 +1.0 447,958 + CA264_01920 0.69 +1.0 447,979 - CA264_01920 0.74 -0.2 448,067 - -0.8 448,067 - -0.3 448,067 - -0.8 448,111 + -1.7 448,120 + +0.3 448,120 + -0.1 448,163 - -0.3 448,164 + -0.3 448,164 + +0.3 448,164 + -1.3 448,164 + +0.3 448,165 - -0.1 448,168 - -0.1 448,233 + +0.1 448,234 - +0.0 448,288 - +0.6 448,334 + -2.0 448,340 + +0.6 448,340 + -0.3 448,393 + -0.0 448,402 + -0.2
Or see this region's nucleotide sequence