Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01870

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01865 and CA264_01870 are separated by 104 nucleotidesCA264_01870 and CA264_01875 are separated by 382 nucleotides CA264_01865: CA264_01865 - polyisoprenoid-binding protein, at 435,689 to 436,225 _01865 CA264_01870: CA264_01870 - hypothetical protein, at 436,330 to 437,229 _01870 CA264_01875: CA264_01875 - hypothetical protein, at 437,612 to 438,175 _01875 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1 2at 435.368 kb on + strandat 435.373 kb on + strandat 435.439 kb on - strandat 435.494 kb on - strandat 435.494 kb on - strandat 435.505 kb on + strandat 435.506 kb on - strandat 435.529 kb on - strandat 435.532 kb on - strandat 435.584 kb on + strandat 435.626 kb on + strandat 435.688 kb on + strandat 435.688 kb on + strandat 435.689 kb on - strandat 435.732 kb on + strandat 435.739 kb on + strandat 435.740 kb on - strandat 435.777 kb on - strand, within CA264_01865at 435.788 kb on + strand, within CA264_01865at 435.791 kb on - strand, within CA264_01865at 436.120 kb on + strand, within CA264_01865at 436.239 kb on + strandat 436.239 kb on + strandat 436.239 kb on + strandat 436.240 kb on - strandat 436.240 kb on - strandat 436.245 kb on + strandat 436.245 kb on + strandat 436.245 kb on + strandat 436.246 kb on - strandat 436.255 kb on + strandat 436.280 kb on - strandat 436.341 kb on - strandat 436.391 kb on + strandat 436.391 kb on + strandat 436.391 kb on + strandat 436.392 kb on - strandat 436.481 kb on + strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.495 kb on - strand, within CA264_01870at 436.519 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.639 kb on + strand, within CA264_01870at 436.649 kb on + strand, within CA264_01870at 436.650 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.847 kb on - strand, within CA264_01870at 436.876 kb on + strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.878 kb on + strand, within CA264_01870at 436.879 kb on - strand, within CA264_01870at 436.882 kb on - strand, within CA264_01870at 436.924 kb on + strand, within CA264_01870at 436.925 kb on - strandat 436.925 kb on - strand, within CA264_01870at 437.139 kb on - strand, within CA264_01870at 437.265 kb on + strandat 437.339 kb on + strandat 437.340 kb on - strandat 437.340 kb on - strandat 437.392 kb on - strandat 437.477 kb on + strandat 437.571 kb on - strandat 437.571 kb on - strandat 437.603 kb on - strandat 437.647 kb on + strandat 437.652 kb on + strandat 437.653 kb on - strandat 437.697 kb on + strand, within CA264_01875at 437.760 kb on + strand, within CA264_01875at 437.761 kb on - strand, within CA264_01875at 437.781 kb on + strand, within CA264_01875at 437.806 kb on - strand, within CA264_01875at 437.826 kb on + strand, within CA264_01875at 437.827 kb on - strand, within CA264_01875at 437.827 kb on - strand, within CA264_01875at 437.893 kb on + strand, within CA264_01875at 437.893 kb on + strand, within CA264_01875at 437.893 kb on + strand, within CA264_01875at 437.896 kb on - strand, within CA264_01875at 437.943 kb on + strand, within CA264_01875at 438.056 kb on + strand, within CA264_01875at 438.120 kb on - strandat 438.140 kb on + strandat 438.140 kb on + strandat 438.184 kb on - strandat 438.186 kb on - strandat 438.186 kb on - strandat 438.186 kb on - strandat 438.202 kb on - strandat 438.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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435,368 + +0.9
435,373 + +0.3
435,439 - -0.6
435,494 - +1.2
435,494 - -1.0
435,505 + -0.3
435,506 - -0.4
435,529 - -0.1
435,532 - -0.0
435,584 + -0.7
435,626 + +0.4
435,688 + -0.2
435,688 + +0.1
435,689 - -0.2
435,732 + +0.4
435,739 + -0.2
435,740 - -0.6
435,777 - CA264_01865 0.16 -0.3
435,788 + CA264_01865 0.18 +0.3
435,791 - CA264_01865 0.19 -0.9
436,120 + CA264_01865 0.80 +2.0
436,239 + +0.6
436,239 + +0.3
436,239 + +0.6
436,240 - -0.3
436,240 - -0.4
436,245 + +1.0
436,245 + -1.1
436,245 + -0.4
436,246 - -1.2
436,255 + -1.2
436,280 - -0.6
436,341 - -0.8
436,391 + -0.2
436,391 + -0.6
436,391 + +0.1
436,392 - -0.1
436,481 + CA264_01870 0.17 +0.3
436,482 - CA264_01870 0.17 -0.2
436,482 - CA264_01870 0.17 -0.3
436,482 - CA264_01870 0.17 -0.6
436,495 - CA264_01870 0.18 +0.6
436,519 - CA264_01870 0.21 -0.5
436,635 - CA264_01870 0.34 +0.2
436,635 - CA264_01870 0.34 +0.3
436,635 - CA264_01870 0.34 +0.1
436,639 + CA264_01870 0.34 +0.3
436,649 + CA264_01870 0.35 -0.1
436,650 - CA264_01870 0.36 +0.9
436,664 - CA264_01870 0.37 -1.2
436,664 - CA264_01870 0.37 +0.8
436,664 - CA264_01870 0.37 +0.5
436,664 - CA264_01870 0.37 -0.0
436,847 - CA264_01870 0.57 +0.2
436,876 + CA264_01870 0.61 -0.5
436,877 - CA264_01870 0.61 +0.2
436,877 - CA264_01870 0.61 -0.0
436,877 - CA264_01870 0.61 +0.3
436,878 + CA264_01870 0.61 +0.6
436,879 - CA264_01870 0.61 +0.8
436,882 - CA264_01870 0.61 +1.0
436,924 + CA264_01870 0.66 -0.9
436,925 - +1.6
436,925 - CA264_01870 0.66 +0.5
437,139 - CA264_01870 0.90 +0.5
437,265 + +0.7
437,339 + -0.3
437,340 - +0.4
437,340 - +0.6
437,392 - +0.8
437,477 + -0.8
437,571 - -2.0
437,571 - +0.1
437,603 - -0.6
437,647 + +0.4
437,652 + +0.2
437,653 - -0.1
437,697 + CA264_01875 0.15 +0.6
437,760 + CA264_01875 0.26 -0.4
437,761 - CA264_01875 0.26 -0.9
437,781 + CA264_01875 0.30 -1.4
437,806 - CA264_01875 0.34 -0.8
437,826 + CA264_01875 0.38 -0.7
437,827 - CA264_01875 0.38 -0.4
437,827 - CA264_01875 0.38 +0.9
437,893 + CA264_01875 0.50 -0.4
437,893 + CA264_01875 0.50 -0.1
437,893 + CA264_01875 0.50 -0.8
437,896 - CA264_01875 0.50 +0.6
437,943 + CA264_01875 0.59 -1.5
438,056 + CA264_01875 0.79 -0.1
438,120 - -1.2
438,140 + -0.0
438,140 + -0.9
438,184 - +0.3
438,186 - +0.1
438,186 - -0.2
438,186 - -0.4
438,202 - -0.1
438,220 + -0.4

Or see this region's nucleotide sequence