Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01630 and CA264_01635 are separated by 335 nucleotides CA264_01635 and CA264_01640 are separated by 253 nucleotides
CA264_01630: CA264_01630 - TonB dependent receptor, at 382,101 to 384,557
_01630
CA264_01635: CA264_01635 - nicotinamidase, at 384,893 to 385,504
_01635
CA264_01640: CA264_01640 - DEAD/DEAH box helicase, at 385,758 to 387,176
_01640
Position (kb) 384
385
386 Strain fitness (log2 ratio) -2
-1
0
1
2 at 383.905 kb on + strand, within CA264_01630 at 383.942 kb on + strand, within CA264_01630 at 384.022 kb on - strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.027 kb on - strand, within CA264_01630 at 384.145 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.301 kb on + strand, within CA264_01630 at 384.302 kb on - strand, within CA264_01630 at 384.310 kb on + strand, within CA264_01630 at 384.311 kb on - strand, within CA264_01630 at 384.314 kb on + strand at 384.327 kb on - strand at 384.328 kb on + strand at 384.329 kb on - strand at 384.356 kb on + strand at 384.357 kb on - strand at 384.420 kb on + strand at 384.421 kb on - strand at 384.433 kb on + strand at 384.434 kb on - strand at 384.434 kb on - strand at 384.434 kb on - strand at 384.520 kb on - strand at 384.561 kb on + strand at 384.561 kb on + strand at 384.562 kb on - strand at 384.562 kb on - strand at 384.562 kb on - strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.564 kb on - strand at 384.631 kb on - strand at 384.645 kb on - strand at 384.696 kb on - strand at 384.714 kb on + strand at 384.714 kb on + strand at 384.784 kb on + strand at 384.796 kb on + strand at 384.815 kb on - strand at 384.872 kb on - strand at 384.872 kb on - strand at 384.873 kb on + strand at 384.873 kb on + strand at 384.874 kb on - strand at 384.907 kb on + strand at 384.942 kb on - strand at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.056 kb on + strand, within CA264_01635 at 385.099 kb on + strand, within CA264_01635 at 385.100 kb on - strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.162 kb on - strand, within CA264_01635 at 385.170 kb on - strand, within CA264_01635 at 385.301 kb on + strand, within CA264_01635 at 385.302 kb on - strand, within CA264_01635 at 385.478 kb on + strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.484 kb on + strand at 385.487 kb on + strand at 385.493 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.508 kb on - strand at 385.508 kb on - strand at 385.514 kb on + strand at 385.517 kb on + strand at 385.517 kb on + strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.524 kb on - strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.545 kb on + strand at 385.545 kb on + strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.547 kb on + strand at 385.548 kb on - strand at 385.692 kb on + strand at 385.692 kb on + strand at 385.693 kb on - strand at 385.760 kb on - strand at 385.814 kb on + strand at 385.814 kb on + strand at 386.201 kb on + strand, within CA264_01640 at 386.255 kb on - strand, within CA264_01640 at 386.255 kb on - strand, within CA264_01640 at 386.486 kb on + strand, within CA264_01640 at 386.486 kb on + strand, within CA264_01640 at 386.487 kb on - strand, within CA264_01640 at 386.487 kb on - strand, within CA264_01640
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 383,905 + CA264_01630 0.73 -0.3 383,942 + CA264_01630 0.75 +0.0 384,022 - CA264_01630 0.78 +0.2 384,026 + CA264_01630 0.78 +0.9 384,026 + CA264_01630 0.78 +2.3 384,026 + CA264_01630 0.78 +0.1 384,027 - CA264_01630 0.78 +0.0 384,145 + CA264_01630 0.83 -0.5 384,234 + CA264_01630 0.87 -0.3 384,234 + CA264_01630 0.87 +0.0 384,234 + CA264_01630 0.87 -0.3 384,235 - CA264_01630 0.87 +1.9 384,235 - CA264_01630 0.87 +1.5 384,235 - CA264_01630 0.87 -0.2 384,235 - CA264_01630 0.87 -0.7 384,235 - CA264_01630 0.87 -0.6 384,235 - CA264_01630 0.87 +0.0 384,301 + CA264_01630 0.90 +0.4 384,302 - CA264_01630 0.90 +0.0 384,310 + CA264_01630 0.90 -0.3 384,311 - CA264_01630 0.90 -0.3 384,314 + +0.3 384,327 - -0.3 384,328 + -1.2 384,329 - -1.9 384,356 + +0.2 384,357 - -0.6 384,420 + -0.2 384,421 - -0.0 384,433 + +0.2 384,434 - +0.0 384,434 - -1.2 384,434 - +0.6 384,520 - +0.5 384,561 + -0.6 384,561 + -0.5 384,562 - -0.7 384,562 - +1.6 384,562 - -0.0 384,563 + -0.7 384,563 + -0.5 384,563 + -0.6 384,563 + -0.3 384,564 - -0.1 384,631 - +0.6 384,645 - -0.3 384,696 - +1.1 384,714 + -0.6 384,714 + -1.5 384,784 + -0.7 384,796 + +0.3 384,815 - +0.5 384,872 - +0.2 384,872 - -1.0 384,873 + +0.2 384,873 + -0.5 384,874 - -0.1 384,907 + -0.1 384,942 - +1.0 385,000 + CA264_01635 0.17 -1.2 385,000 + CA264_01635 0.17 +0.5 385,000 + CA264_01635 0.17 -0.2 385,006 - CA264_01635 0.18 -0.1 385,006 - CA264_01635 0.18 -1.0 385,056 + CA264_01635 0.27 -0.9 385,099 + CA264_01635 0.34 -0.6 385,100 - CA264_01635 0.34 +0.1 385,161 + CA264_01635 0.44 -0.3 385,161 + CA264_01635 0.44 +0.1 385,162 - CA264_01635 0.44 +0.1 385,170 - CA264_01635 0.45 -0.1 385,301 + CA264_01635 0.67 -0.4 385,302 - CA264_01635 0.67 -0.4 385,478 + -0.0 385,479 - +0.5 385,479 - -0.7 385,479 - -0.4 385,479 - -0.0 385,479 - +0.5 385,479 - -0.3 385,484 + +0.0 385,487 + -0.4 385,493 + -1.3 385,504 + +2.6 385,504 + -0.3 385,504 + -0.8 385,504 + -0.8 385,505 - -0.5 385,505 - -0.8 385,505 - -1.4 385,508 - -0.3 385,508 - -0.7 385,514 + -0.1 385,517 + +0.9 385,517 + +0.4 385,518 - +1.0 385,518 - -0.3 385,518 - -0.7 385,524 - +2.2 385,543 + -0.2 385,543 + +1.7 385,543 + -0.1 385,545 + +0.8 385,545 + -0.2 385,546 - +1.0 385,546 - -0.1 385,546 - +0.3 385,546 - -0.5 385,546 - -2.0 385,547 + -0.7 385,548 - -0.4 385,692 + +0.8 385,692 + +1.6 385,693 - +0.5 385,760 - +0.4 385,814 + -0.7 385,814 + -0.9 386,201 + CA264_01640 0.31 +0.3 386,255 - CA264_01640 0.35 -0.1 386,255 - CA264_01640 0.35 +0.3 386,486 + CA264_01640 0.51 -0.2 386,486 + CA264_01640 0.51 -1.4 386,487 - CA264_01640 0.51 -0.7 386,487 - CA264_01640 0.51 -1.0
Or see this region's nucleotide sequence