Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01515 and CA264_01520 are separated by 272 nucleotides CA264_01520 and CA264_01525 are separated by 372 nucleotides
CA264_01515: CA264_01515 - hypothetical protein, at 357,422 to 358,621
_01515
CA264_01520: CA264_01520 - adenylosuccinate lyase, at 358,894 to 360,246
_01520
CA264_01525: CA264_01525 - penicillin-binding protein, at 360,619 to 362,601
_01525
Position (kb) 358
359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 357.944 kb on + strand, within CA264_01515 at 357.975 kb on + strand, within CA264_01515 at 357.975 kb on + strand, within CA264_01515 at 358.030 kb on + strand, within CA264_01515 at 358.153 kb on + strand, within CA264_01515 at 358.154 kb on - strand, within CA264_01515 at 358.202 kb on - strand, within CA264_01515 at 358.319 kb on - strand, within CA264_01515 at 358.441 kb on + strand, within CA264_01515 at 358.441 kb on + strand, within CA264_01515 at 358.442 kb on - strand, within CA264_01515 at 358.463 kb on + strand, within CA264_01515 at 358.463 kb on + strand, within CA264_01515 at 358.463 kb on + strand, within CA264_01515 at 358.464 kb on - strand, within CA264_01515 at 358.483 kb on + strand, within CA264_01515 at 358.490 kb on - strand, within CA264_01515 at 358.607 kb on - strand at 358.640 kb on + strand at 358.694 kb on + strand at 358.694 kb on + strand at 358.695 kb on - strand at 358.702 kb on - strand at 358.796 kb on + strand at 358.864 kb on + strand at 358.867 kb on - strand at 358.879 kb on - strand at 358.892 kb on - strand at 358.895 kb on + strand at 360.249 kb on + strand at 360.277 kb on + strand at 360.295 kb on + strand at 360.295 kb on + strand at 360.380 kb on + strand at 360.412 kb on - strand at 360.430 kb on + strand at 360.459 kb on + strand at 360.459 kb on + strand at 360.460 kb on - strand at 360.464 kb on + strand at 360.464 kb on + strand at 360.465 kb on - strand at 360.465 kb on - strand at 360.465 kb on - strand at 360.467 kb on - strand at 360.467 kb on - strand at 360.467 kb on - strand at 360.484 kb on + strand at 360.485 kb on - strand at 360.485 kb on - strand at 360.494 kb on - strand at 360.494 kb on - strand at 360.496 kb on - strand at 360.496 kb on - strand at 360.497 kb on + strand at 360.497 kb on + strand at 360.497 kb on + strand at 360.498 kb on - strand at 360.500 kb on + strand at 360.501 kb on - strand at 360.507 kb on + strand at 360.527 kb on + strand at 360.527 kb on + strand at 360.527 kb on + strand at 360.527 kb on + strand at 360.528 kb on - strand at 360.528 kb on - strand at 360.530 kb on - strand at 360.534 kb on + strand at 360.534 kb on + strand at 360.534 kb on + strand at 360.534 kb on + strand at 360.534 kb on + strand at 360.535 kb on - strand at 360.536 kb on + strand at 360.537 kb on - strand at 360.552 kb on - strand at 360.566 kb on + strand at 360.566 kb on + strand at 360.570 kb on + strand at 360.580 kb on - strand at 360.586 kb on + strand at 360.587 kb on - strand at 360.601 kb on + strand at 360.603 kb on + strand at 360.690 kb on + strand at 360.690 kb on + strand at 360.691 kb on - strand at 360.691 kb on - strand at 360.715 kb on + strand at 360.715 kb on + strand at 360.716 kb on - strand at 360.717 kb on + strand at 360.717 kb on + strand at 360.717 kb on + strand at 360.718 kb on - strand at 360.729 kb on + strand at 360.754 kb on + strand at 360.869 kb on + strand, within CA264_01525 at 360.869 kb on + strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.871 kb on + strand, within CA264_01525 at 361.129 kb on + strand, within CA264_01525 at 361.205 kb on + strand, within CA264_01525 at 361.207 kb on + strand, within CA264_01525
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 357,944 + CA264_01515 0.43 -0.0 357,975 + CA264_01515 0.46 +0.2 357,975 + CA264_01515 0.46 +1.8 358,030 + CA264_01515 0.51 +0.2 358,153 + CA264_01515 0.61 -0.4 358,154 - CA264_01515 0.61 +0.6 358,202 - CA264_01515 0.65 -1.2 358,319 - CA264_01515 0.75 -0.1 358,441 + CA264_01515 0.85 -0.4 358,441 + CA264_01515 0.85 +0.4 358,442 - CA264_01515 0.85 +0.1 358,463 + CA264_01515 0.87 -0.1 358,463 + CA264_01515 0.87 -0.6 358,463 + CA264_01515 0.87 -0.5 358,464 - CA264_01515 0.87 -0.6 358,483 + CA264_01515 0.88 -0.2 358,490 - CA264_01515 0.89 +0.8 358,607 - +0.1 358,640 + -0.8 358,694 + -0.2 358,694 + -0.4 358,695 - -1.2 358,702 - -0.6 358,796 + +0.8 358,864 + +0.1 358,867 - +0.8 358,879 - -0.1 358,892 - -0.1 358,895 + -0.3 360,249 + -0.3 360,277 + -0.2 360,295 + -0.5 360,295 + -0.7 360,380 + -0.1 360,412 - -0.2 360,430 + -0.7 360,459 + -0.4 360,459 + -0.2 360,460 - -0.3 360,464 + +0.4 360,464 + -0.2 360,465 - +0.7 360,465 - -0.2 360,465 - +0.3 360,467 - -2.1 360,467 - +0.1 360,467 - -0.0 360,484 + -0.5 360,485 - -0.1 360,485 - -1.8 360,494 - +0.4 360,494 - -1.1 360,496 - +1.9 360,496 - -0.0 360,497 + +0.2 360,497 + -0.4 360,497 + -1.0 360,498 - -1.6 360,500 + -0.7 360,501 - -0.4 360,507 + +0.1 360,527 + -0.2 360,527 + -0.8 360,527 + -0.8 360,527 + -0.0 360,528 - +1.0 360,528 - +1.1 360,530 - +0.2 360,534 + +0.1 360,534 + -0.9 360,534 + +0.8 360,534 + -0.2 360,534 + +0.6 360,535 - +0.4 360,536 + -1.1 360,537 - -0.3 360,552 - -0.4 360,566 + +0.2 360,566 + -0.2 360,570 + +1.6 360,580 - -0.1 360,586 + -0.1 360,587 - -0.2 360,601 + +0.2 360,603 + -0.0 360,690 + -0.1 360,690 + -0.5 360,691 - -0.9 360,691 - -0.2 360,715 + -2.5 360,715 + -0.0 360,716 - -0.2 360,717 + -0.2 360,717 + +0.2 360,717 + -1.5 360,718 - +0.4 360,729 + +0.4 360,754 + +0.5 360,869 + CA264_01525 0.13 -0.2 360,869 + CA264_01525 0.13 -0.8 360,870 - CA264_01525 0.13 -0.5 360,870 - CA264_01525 0.13 +0.1 360,870 - CA264_01525 0.13 -0.5 360,870 - CA264_01525 0.13 -0.0 360,870 - CA264_01525 0.13 -0.2 360,871 + CA264_01525 0.13 +0.1 361,129 + CA264_01525 0.26 +1.3 361,205 + CA264_01525 0.30 -1.9 361,207 + CA264_01525 0.30 +0.2
Or see this region's nucleotide sequence