Experiment: m.b. Ceftazidime 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01085 and CA264_01090 are separated by 2 nucleotides CA264_01090 and CA264_01095 are separated by 323 nucleotides CA264_01095 and CA264_01100 are separated by 244 nucleotides CA264_01100 and CA264_01105 are separated by 18 nucleotides
CA264_01085: CA264_01085 - hypothetical protein, at 238,338 to 238,883
_01085
CA264_01090: CA264_01090 - hypothetical protein, at 238,886 to 239,275
_01090
CA264_01095: CA264_01095 - S9 family peptidase, at 239,599 to 241,761
_01095
CA264_01100: CA264_01100 - Clp protease ClpS, at 242,006 to 242,293
_01100
CA264_01105: CA264_01105 - recombination protein RecR, at 242,312 to 242,920
_01105
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 238.729 kb on + strand, within CA264_01085 at 238.730 kb on - strand, within CA264_01085 at 238.758 kb on + strand, within CA264_01085 at 238.758 kb on + strand, within CA264_01085 at 238.759 kb on - strand, within CA264_01085 at 238.765 kb on + strand, within CA264_01085 at 238.773 kb on + strand, within CA264_01085 at 238.773 kb on + strand, within CA264_01085 at 238.773 kb on + strand, within CA264_01085 at 238.774 kb on - strand, within CA264_01085 at 238.774 kb on - strand, within CA264_01085 at 238.878 kb on - strand at 238.878 kb on - strand at 238.883 kb on + strand at 238.884 kb on - strand at 238.884 kb on - strand at 238.887 kb on + strand at 238.887 kb on + strand at 238.888 kb on - strand at 238.953 kb on - strand, within CA264_01090 at 239.000 kb on - strand, within CA264_01090 at 239.034 kb on - strand, within CA264_01090 at 239.139 kb on + strand, within CA264_01090 at 239.139 kb on + strand, within CA264_01090 at 239.140 kb on - strand, within CA264_01090 at 239.149 kb on + strand, within CA264_01090 at 239.149 kb on + strand, within CA264_01090 at 239.235 kb on + strand, within CA264_01090 at 239.268 kb on + strand at 239.269 kb on - strand at 239.269 kb on - strand at 239.269 kb on - strand at 239.288 kb on + strand at 239.301 kb on + strand at 239.301 kb on + strand at 239.302 kb on - strand at 239.346 kb on + strand at 239.347 kb on - strand at 239.406 kb on + strand at 239.406 kb on + strand at 239.411 kb on + strand at 239.519 kb on - strand at 239.544 kb on + strand at 239.547 kb on + strand at 239.548 kb on - strand at 239.548 kb on - strand at 239.548 kb on - strand at 239.694 kb on - strand at 239.705 kb on - strand at 239.809 kb on + strand at 239.895 kb on - strand, within CA264_01095 at 239.898 kb on - strand, within CA264_01095 at 239.932 kb on + strand, within CA264_01095 at 239.932 kb on + strand, within CA264_01095 at 240.045 kb on - strand, within CA264_01095 at 240.145 kb on + strand, within CA264_01095 at 240.159 kb on + strand, within CA264_01095 at 240.161 kb on + strand, within CA264_01095 at 240.162 kb on - strand, within CA264_01095 at 240.245 kb on + strand, within CA264_01095 at 240.246 kb on - strand, within CA264_01095 at 240.251 kb on + strand, within CA264_01095 at 240.251 kb on + strand, within CA264_01095 at 240.266 kb on + strand, within CA264_01095 at 240.266 kb on + strand, within CA264_01095 at 240.311 kb on + strand, within CA264_01095 at 240.312 kb on - strand, within CA264_01095 at 240.464 kb on + strand, within CA264_01095 at 240.465 kb on - strand, within CA264_01095 at 240.479 kb on + strand, within CA264_01095 at 240.605 kb on + strand, within CA264_01095 at 240.605 kb on + strand, within CA264_01095 at 240.605 kb on + strand, within CA264_01095 at 240.606 kb on - strand, within CA264_01095 at 240.609 kb on - strand, within CA264_01095 at 240.610 kb on + strand, within CA264_01095 at 240.610 kb on + strand, within CA264_01095 at 240.611 kb on - strand, within CA264_01095 at 240.611 kb on - strand, within CA264_01095 at 240.640 kb on + strand, within CA264_01095 at 240.702 kb on - strand, within CA264_01095 at 240.708 kb on - strand, within CA264_01095 at 240.709 kb on + strand, within CA264_01095 at 240.709 kb on + strand, within CA264_01095 at 240.710 kb on - strand, within CA264_01095 at 240.774 kb on - strand, within CA264_01095 at 240.797 kb on + strand, within CA264_01095 at 240.797 kb on + strand, within CA264_01095 at 240.854 kb on + strand, within CA264_01095 at 240.855 kb on - strand, within CA264_01095 at 240.862 kb on - strand, within CA264_01095 at 240.902 kb on + strand, within CA264_01095 at 241.001 kb on + strand, within CA264_01095 at 241.001 kb on + strand, within CA264_01095 at 241.050 kb on + strand, within CA264_01095 at 241.050 kb on + strand, within CA264_01095 at 241.051 kb on - strand, within CA264_01095 at 241.127 kb on + strand, within CA264_01095 at 241.128 kb on - strand, within CA264_01095 at 241.128 kb on - strand, within CA264_01095 at 241.208 kb on + strand, within CA264_01095 at 241.326 kb on + strand, within CA264_01095 at 241.327 kb on - strand, within CA264_01095 at 241.346 kb on + strand, within CA264_01095 at 241.346 kb on + strand, within CA264_01095 at 241.465 kb on - strand, within CA264_01095 at 241.583 kb on + strand at 241.583 kb on + strand at 241.714 kb on + strand at 241.714 kb on + strand at 241.715 kb on - strand at 241.762 kb on - strand at 241.773 kb on - strand at 241.775 kb on - strand at 241.775 kb on - strand at 241.813 kb on - strand at 241.814 kb on + strand at 241.869 kb on - strand at 241.878 kb on + strand at 241.898 kb on + strand at 241.899 kb on - strand at 241.900 kb on + strand at 241.901 kb on - strand at 241.901 kb on - strand at 241.925 kb on + strand at 241.925 kb on + strand at 241.927 kb on + strand at 241.928 kb on - strand at 241.954 kb on + strand at 241.954 kb on + strand at 241.954 kb on + strand at 241.955 kb on - strand at 241.955 kb on - strand at 241.955 kb on - strand at 241.956 kb on + strand at 241.957 kb on - strand at 241.967 kb on + strand at 241.968 kb on - strand at 241.968 kb on - strand at 241.968 kb on - strand at 242.003 kb on - strand at 242.023 kb on + strand at 242.023 kb on + strand at 242.093 kb on + strand, within CA264_01100 at 242.095 kb on + strand, within CA264_01100 at 242.125 kb on - strand, within CA264_01100 at 242.125 kb on - strand, within CA264_01100 at 242.125 kb on - strand, within CA264_01100 at 242.145 kb on + strand, within CA264_01100 at 242.145 kb on + strand, within CA264_01100 at 242.146 kb on - strand, within CA264_01100 at 242.179 kb on + strand, within CA264_01100 at 242.210 kb on - strand, within CA264_01100 at 242.214 kb on + strand, within CA264_01100 at 242.229 kb on - strand, within CA264_01100 at 242.246 kb on - strand, within CA264_01100 at 242.285 kb on - strand at 242.286 kb on + strand at 242.287 kb on - strand at 242.291 kb on + strand at 242.292 kb on - strand at 242.292 kb on - strand at 242.305 kb on - strand at 242.305 kb on - strand at 242.612 kb on + strand, within CA264_01105 at 242.624 kb on + strand, within CA264_01105 at 242.664 kb on + strand, within CA264_01105 at 242.665 kb on - strand, within CA264_01105 at 242.665 kb on - strand, within CA264_01105 at 242.736 kb on + strand, within CA264_01105
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml remove 238,729 + CA264_01085 0.72 -0.2 238,730 - CA264_01085 0.72 +1.1 238,758 + CA264_01085 0.77 +1.1 238,758 + CA264_01085 0.77 -0.1 238,759 - CA264_01085 0.77 +0.2 238,765 + CA264_01085 0.78 +0.7 238,773 + CA264_01085 0.80 -0.4 238,773 + CA264_01085 0.80 -0.4 238,773 + CA264_01085 0.80 -0.6 238,774 - CA264_01085 0.80 +0.1 238,774 - CA264_01085 0.80 -0.3 238,878 - +0.5 238,878 - +1.3 238,883 + +0.3 238,884 - +0.1 238,884 - -0.9 238,887 + -0.5 238,887 + +0.2 238,888 - -0.9 238,953 - CA264_01090 0.17 +0.8 239,000 - CA264_01090 0.29 +0.0 239,034 - CA264_01090 0.38 +0.0 239,139 + CA264_01090 0.65 +1.1 239,139 + CA264_01090 0.65 -0.1 239,140 - CA264_01090 0.65 -0.9 239,149 + CA264_01090 0.67 -1.3 239,149 + CA264_01090 0.67 +0.2 239,235 + CA264_01090 0.89 +0.1 239,268 + -0.4 239,269 - -0.7 239,269 - -0.5 239,269 - +0.8 239,288 + -0.3 239,301 + -1.0 239,301 + -1.0 239,302 - -0.7 239,346 + +0.3 239,347 - +0.7 239,406 + +0.8 239,406 + +0.4 239,411 + +1.8 239,519 - +0.9 239,544 + -0.5 239,547 + -1.0 239,548 - +0.3 239,548 - -0.4 239,548 - +0.0 239,694 - +0.2 239,705 - -0.5 239,809 + +0.5 239,895 - CA264_01095 0.14 -0.1 239,898 - CA264_01095 0.14 +0.3 239,932 + CA264_01095 0.15 +0.1 239,932 + CA264_01095 0.15 -0.3 240,045 - CA264_01095 0.21 +1.5 240,145 + CA264_01095 0.25 +0.9 240,159 + CA264_01095 0.26 -0.5 240,161 + CA264_01095 0.26 +0.8 240,162 - CA264_01095 0.26 -1.5 240,245 + CA264_01095 0.30 +0.9 240,246 - CA264_01095 0.30 -0.2 240,251 + CA264_01095 0.30 -0.7 240,251 + CA264_01095 0.30 -0.4 240,266 + CA264_01095 0.31 -0.0 240,266 + CA264_01095 0.31 -0.1 240,311 + CA264_01095 0.33 +0.2 240,312 - CA264_01095 0.33 +0.4 240,464 + CA264_01095 0.40 -0.7 240,465 - CA264_01095 0.40 +0.1 240,479 + CA264_01095 0.41 -0.1 240,605 + CA264_01095 0.47 -0.8 240,605 + CA264_01095 0.47 -1.1 240,605 + CA264_01095 0.47 -0.4 240,606 - CA264_01095 0.47 -0.9 240,609 - CA264_01095 0.47 +0.0 240,610 + CA264_01095 0.47 +1.1 240,610 + CA264_01095 0.47 -1.1 240,611 - CA264_01095 0.47 -0.6 240,611 - CA264_01095 0.47 +0.8 240,640 + CA264_01095 0.48 +1.2 240,702 - CA264_01095 0.51 -0.8 240,708 - CA264_01095 0.51 -1.2 240,709 + CA264_01095 0.51 +0.4 240,709 + CA264_01095 0.51 -0.7 240,710 - CA264_01095 0.51 +0.1 240,774 - CA264_01095 0.54 +1.2 240,797 + CA264_01095 0.55 +0.1 240,797 + CA264_01095 0.55 +0.0 240,854 + CA264_01095 0.58 -0.5 240,855 - CA264_01095 0.58 -0.9 240,862 - CA264_01095 0.58 +1.3 240,902 + CA264_01095 0.60 +0.2 241,001 + CA264_01095 0.65 -0.1 241,001 + CA264_01095 0.65 +0.6 241,050 + CA264_01095 0.67 +0.6 241,050 + CA264_01095 0.67 -2.3 241,051 - CA264_01095 0.67 -1.6 241,127 + CA264_01095 0.71 +0.1 241,128 - CA264_01095 0.71 -0.2 241,128 - CA264_01095 0.71 +0.1 241,208 + CA264_01095 0.74 +0.2 241,326 + CA264_01095 0.80 -1.0 241,327 - CA264_01095 0.80 +0.8 241,346 + CA264_01095 0.81 +1.1 241,346 + CA264_01095 0.81 +1.6 241,465 - CA264_01095 0.86 +0.3 241,583 + -0.8 241,583 + -0.7 241,714 + -0.8 241,714 + +0.8 241,715 - -1.0 241,762 - -0.3 241,773 - +0.8 241,775 - +0.1 241,775 - +0.1 241,813 - +1.9 241,814 + +0.2 241,869 - -0.3 241,878 + -1.4 241,898 + +1.5 241,899 - +0.2 241,900 + -0.1 241,901 - -0.7 241,901 - -0.7 241,925 + +1.2 241,925 + +0.5 241,927 + +0.0 241,928 - +0.1 241,954 + +0.1 241,954 + +1.6 241,954 + +0.0 241,955 - +0.5 241,955 - -0.4 241,955 - -0.4 241,956 + -0.0 241,957 - +0.4 241,967 + +0.8 241,968 - +1.0 241,968 - +0.1 241,968 - -0.7 242,003 - -0.9 242,023 + -0.9 242,023 + -0.1 242,093 + CA264_01100 0.30 +0.4 242,095 + CA264_01100 0.31 +0.2 242,125 - CA264_01100 0.41 -0.3 242,125 - CA264_01100 0.41 -0.6 242,125 - CA264_01100 0.41 +0.1 242,145 + CA264_01100 0.48 +1.0 242,145 + CA264_01100 0.48 +1.4 242,146 - CA264_01100 0.49 +0.2 242,179 + CA264_01100 0.60 +0.4 242,210 - CA264_01100 0.71 -0.4 242,214 + CA264_01100 0.72 -0.4 242,229 - CA264_01100 0.77 -0.8 242,246 - CA264_01100 0.83 +2.1 242,285 - -0.6 242,286 + +0.6 242,287 - +0.1 242,291 + -0.6 242,292 - -1.0 242,292 - +0.2 242,305 - -0.2 242,305 - -0.2 242,612 + CA264_01105 0.49 +1.1 242,624 + CA264_01105 0.51 +0.8 242,664 + CA264_01105 0.58 -0.6 242,665 - CA264_01105 0.58 -0.2 242,665 - CA264_01105 0.58 +0.5 242,736 + CA264_01105 0.70 +1.6
Or see this region's nucleotide sequence