Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00580

Experiment: m.b. Ceftazidime 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00575 and CA264_00580 are separated by 136 nucleotidesCA264_00580 and CA264_00585 are separated by 255 nucleotidesCA264_00585 and CA264_00590 are separated by 44 nucleotides CA264_00575: CA264_00575 - MFS transporter, at 127,543 to 128,811 _00575 CA264_00580: CA264_00580 - aminoacyl-tRNA hydrolase, at 128,948 to 129,511 _00580 CA264_00585: CA264_00585 - 50S ribosomal protein L25/general stress protein Ctc, at 129,767 to 130,351 _00585 CA264_00590: CA264_00590 - ribose-phosphate pyrophosphokinase, at 130,396 to 131,325 _00590 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1at 127.977 kb on - strand, within CA264_00575at 128.055 kb on + strand, within CA264_00575at 128.055 kb on + strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.058 kb on - strand, within CA264_00575at 128.058 kb on - strand, within CA264_00575at 128.072 kb on + strand, within CA264_00575at 128.140 kb on + strand, within CA264_00575at 128.307 kb on - strand, within CA264_00575at 128.311 kb on + strand, within CA264_00575at 128.415 kb on - strand, within CA264_00575at 128.520 kb on + strand, within CA264_00575at 128.525 kb on + strand, within CA264_00575at 128.526 kb on - strand, within CA264_00575at 128.528 kb on - strand, within CA264_00575at 128.566 kb on - strand, within CA264_00575at 128.630 kb on + strand, within CA264_00575at 128.666 kb on + strand, within CA264_00575at 128.688 kb on - strandat 128.741 kb on - strandat 128.815 kb on - strandat 128.820 kb on + strandat 128.846 kb on - strandat 128.922 kb on + strandat 128.924 kb on + strandat 128.927 kb on + strandat 128.928 kb on - strandat 128.950 kb on - strandat 129.511 kb on + strandat 129.593 kb on - strandat 129.646 kb on - strandat 129.646 kb on - strandat 129.673 kb on + strandat 129.683 kb on + strandat 130.379 kb on - strandat 130.393 kb on + strandat 130.394 kb on - strandat 130.397 kb on + strandat 130.398 kb on - strandat 130.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.0005 mg/ml
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127,977 - CA264_00575 0.34 -1.7
128,055 + CA264_00575 0.40 -0.6
128,055 + CA264_00575 0.40 +0.8
128,056 - CA264_00575 0.40 -0.2
128,056 - CA264_00575 0.40 -0.5
128,056 - CA264_00575 0.40 +0.2
128,057 + CA264_00575 0.41 +0.1
128,057 + CA264_00575 0.41 +0.1
128,057 + CA264_00575 0.41 +1.1
128,058 - CA264_00575 0.41 +1.0
128,058 - CA264_00575 0.41 -0.8
128,072 + CA264_00575 0.42 +0.2
128,140 + CA264_00575 0.47 -1.4
128,307 - CA264_00575 0.60 -0.1
128,311 + CA264_00575 0.61 -0.4
128,415 - CA264_00575 0.69 -0.8
128,520 + CA264_00575 0.77 +0.7
128,525 + CA264_00575 0.77 +1.6
128,526 - CA264_00575 0.77 -0.1
128,528 - CA264_00575 0.78 -0.1
128,566 - CA264_00575 0.81 -0.8
128,630 + CA264_00575 0.86 -1.4
128,666 + CA264_00575 0.88 -0.4
128,688 - -0.0
128,741 - -0.1
128,815 - +0.8
128,820 + +0.1
128,846 - -0.7
128,922 + -0.8
128,924 + +0.5
128,927 + +0.6
128,928 - +0.1
128,950 - -1.9
129,511 + -0.1
129,593 - -0.2
129,646 - -0.3
129,646 - -0.8
129,673 + -0.6
129,683 + -1.1
130,379 - -0.4
130,393 + -0.0
130,394 - +0.4
130,397 + -0.4
130,398 - -1.3
130,402 - -0.5

Or see this region's nucleotide sequence