Experiment: Choline chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0826 and Atu0827 are separated by 172 nucleotides Atu0827 and Atu0828 are separated by 365 nucleotides Atu0828 and Atu0829 are separated by 11 nucleotides
Atu0826: Atu0826 - hypothetical protein, at 824,034 to 825,845
Atu0826
Atu0827: Atu0827 - hypothetical protein, at 826,018 to 826,254
Atu0827
Atu0828: Atu0828 - transcriptional regulator BetI, at 826,620 to 827,240
Atu0828
Atu0829: Atu0829 - betaine aldehyde dehydrogenase, at 827,252 to 828,733
Atu0829
Position (kb) 826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 825.622 kb on - strand, within Atu0826 at 825.885 kb on + strand at 825.911 kb on - strand at 825.932 kb on - strand at 825.998 kb on - strand at 826.008 kb on - strand at 826.049 kb on + strand, within Atu0827 at 826.057 kb on - strand, within Atu0827 at 826.057 kb on - strand, within Atu0827 at 826.057 kb on - strand, within Atu0827 at 826.057 kb on - strand, within Atu0827 at 826.113 kb on - strand, within Atu0827 at 826.178 kb on + strand, within Atu0827 at 826.192 kb on - strand, within Atu0827 at 826.200 kb on - strand, within Atu0827 at 826.272 kb on - strand at 826.340 kb on - strand at 826.430 kb on - strand at 826.617 kb on + strand at 826.681 kb on + strand at 826.689 kb on - strand, within Atu0828 at 826.689 kb on - strand, within Atu0828 at 826.689 kb on - strand, within Atu0828 at 826.715 kb on + strand, within Atu0828 at 826.723 kb on - strand, within Atu0828 at 826.863 kb on - strand, within Atu0828 at 826.887 kb on + strand, within Atu0828 at 826.913 kb on + strand, within Atu0828 at 826.920 kb on + strand, within Atu0828 at 827.121 kb on - strand, within Atu0828 at 827.225 kb on + strand at 827.235 kb on + strand at 827.235 kb on + strand at 827.235 kb on + strand at 827.243 kb on - strand at 827.243 kb on - strand at 827.243 kb on - strand at 827.243 kb on - strand at 827.269 kb on + strand at 827.269 kb on + strand at 827.289 kb on - strand at 827.289 kb on - strand at 827.543 kb on + strand, within Atu0829 at 827.595 kb on + strand, within Atu0829 at 827.597 kb on + strand, within Atu0829 at 827.639 kb on - strand, within Atu0829 at 827.762 kb on - strand, within Atu0829 at 827.799 kb on - strand, within Atu0829 at 827.799 kb on - strand, within Atu0829 at 827.822 kb on + strand, within Atu0829 at 827.830 kb on - strand, within Atu0829 at 827.858 kb on - strand, within Atu0829 at 827.880 kb on - strand, within Atu0829 at 827.942 kb on + strand, within Atu0829 at 827.952 kb on + strand, within Atu0829 at 828.097 kb on + strand, within Atu0829 at 828.110 kb on + strand, within Atu0829 at 828.115 kb on + strand, within Atu0829 at 828.123 kb on - strand, within Atu0829 at 828.215 kb on + strand, within Atu0829 at 828.228 kb on - strand, within Atu0829
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride (N) remove 825,622 - Atu0826 0.88 -0.4 825,885 + +0.7 825,911 - -0.5 825,932 - +0.6 825,998 - +0.1 826,008 - -0.4 826,049 + Atu0827 0.13 +0.5 826,057 - Atu0827 0.16 +0.0 826,057 - Atu0827 0.16 -0.1 826,057 - Atu0827 0.16 +0.7 826,057 - Atu0827 0.16 -0.4 826,113 - Atu0827 0.40 +0.9 826,178 + Atu0827 0.68 -0.7 826,192 - Atu0827 0.73 +0.8 826,200 - Atu0827 0.77 -0.1 826,272 - +0.4 826,340 - +0.9 826,430 - +0.3 826,617 + -2.8 826,681 + -1.7 826,689 - Atu0828 0.11 +0.6 826,689 - Atu0828 0.11 -2.9 826,689 - Atu0828 0.11 -2.2 826,715 + Atu0828 0.15 -1.7 826,723 - Atu0828 0.17 -2.9 826,863 - Atu0828 0.39 -3.2 826,887 + Atu0828 0.43 +0.4 826,913 + Atu0828 0.47 -1.3 826,920 + Atu0828 0.48 -2.1 827,121 - Atu0828 0.81 -1.6 827,225 + -2.7 827,235 + -1.1 827,235 + -2.3 827,235 + -0.6 827,243 - -1.6 827,243 - -2.3 827,243 - +0.6 827,243 - -2.4 827,269 + -1.4 827,269 + -2.2 827,289 - -2.1 827,289 - -2.5 827,543 + Atu0829 0.20 -2.9 827,595 + Atu0829 0.23 -3.0 827,597 + Atu0829 0.23 -2.7 827,639 - Atu0829 0.26 -2.2 827,762 - Atu0829 0.34 -2.2 827,799 - Atu0829 0.37 -1.6 827,799 - Atu0829 0.37 -2.1 827,822 + Atu0829 0.38 -1.4 827,830 - Atu0829 0.39 -2.2 827,858 - Atu0829 0.41 -2.9 827,880 - Atu0829 0.42 +0.6 827,942 + Atu0829 0.47 -2.6 827,952 + Atu0829 0.47 -2.7 828,097 + Atu0829 0.57 -1.4 828,110 + Atu0829 0.58 -2.5 828,115 + Atu0829 0.58 -2.7 828,123 - Atu0829 0.59 -3.0 828,215 + Atu0829 0.65 -2.6 828,228 - Atu0829 0.66 -3.1
Or see this region's nucleotide sequence