Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1686

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1685 and Echvi_1686 overlap by 11 nucleotidesEchvi_1686 and Echvi_1687 are separated by 39 nucleotides Echvi_1685: Echvi_1685 - ABC-type sugar transport system, periplasmic component, at 1,975,918 to 1,977,081 _1685 Echvi_1686: Echvi_1686 - Predicted acyl-CoA transferases/carnitine dehydratase, at 1,977,071 to 1,978,234 _1686 Echvi_1687: Echvi_1687 - Predicted acyl-CoA transferases/carnitine dehydratase, at 1,978,274 to 1,979,416 _1687 Position (kb) 1977 1978 1979Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1976.120 kb on + strand, within Echvi_1685at 1976.121 kb on - strand, within Echvi_1685at 1976.121 kb on - strand, within Echvi_1685at 1976.207 kb on + strand, within Echvi_1685at 1976.233 kb on + strand, within Echvi_1685at 1976.233 kb on + strand, within Echvi_1685at 1976.233 kb on + strand, within Echvi_1685at 1976.472 kb on + strand, within Echvi_1685at 1976.487 kb on - strand, within Echvi_1685at 1976.523 kb on - strand, within Echvi_1685at 1976.569 kb on + strand, within Echvi_1685at 1976.569 kb on + strand, within Echvi_1685at 1976.569 kb on + strand, within Echvi_1685at 1976.569 kb on + strand, within Echvi_1685at 1976.569 kb on + strand, within Echvi_1685at 1976.570 kb on - strand, within Echvi_1685at 1976.570 kb on - strand, within Echvi_1685at 1976.590 kb on + strand, within Echvi_1685at 1976.591 kb on - strand, within Echvi_1685at 1976.627 kb on - strand, within Echvi_1685at 1976.706 kb on + strand, within Echvi_1685at 1976.752 kb on - strand, within Echvi_1685at 1976.752 kb on - strand, within Echvi_1685at 1976.752 kb on - strand, within Echvi_1685at 1976.766 kb on - strand, within Echvi_1685at 1976.812 kb on + strand, within Echvi_1685at 1976.812 kb on + strand, within Echvi_1685at 1976.812 kb on + strand, within Echvi_1685at 1976.813 kb on - strand, within Echvi_1685at 1976.813 kb on - strand, within Echvi_1685at 1976.845 kb on - strand, within Echvi_1685at 1976.913 kb on - strand, within Echvi_1685at 1976.923 kb on + strand, within Echvi_1685at 1976.924 kb on - strand, within Echvi_1685at 1976.948 kb on - strand, within Echvi_1685at 1976.948 kb on - strand, within Echvi_1685at 1976.948 kb on - strand, within Echvi_1685at 1976.990 kb on - strandat 1977.144 kb on - strandat 1977.144 kb on - strandat 1977.168 kb on + strandat 1977.169 kb on - strandat 1977.169 kb on - strandat 1977.311 kb on + strand, within Echvi_1686at 1977.311 kb on + strand, within Echvi_1686at 1977.312 kb on - strand, within Echvi_1686at 1977.312 kb on - strand, within Echvi_1686at 1977.438 kb on + strand, within Echvi_1686at 1977.438 kb on + strand, within Echvi_1686at 1977.464 kb on + strand, within Echvi_1686at 1977.482 kb on + strand, within Echvi_1686at 1977.508 kb on + strand, within Echvi_1686at 1977.824 kb on + strand, within Echvi_1686at 1977.865 kb on + strand, within Echvi_1686at 1977.865 kb on + strand, within Echvi_1686at 1977.865 kb on + strand, within Echvi_1686at 1977.866 kb on - strand, within Echvi_1686at 1977.867 kb on + strand, within Echvi_1686at 1977.868 kb on - strand, within Echvi_1686at 1977.868 kb on - strand, within Echvi_1686at 1977.868 kb on - strand, within Echvi_1686at 1977.868 kb on - strand, within Echvi_1686at 1978.024 kb on - strand, within Echvi_1686at 1978.024 kb on - strand, within Echvi_1686at 1978.177 kb on + strandat 1978.217 kb on - strandat 1978.247 kb on - strandat 1978.251 kb on + strandat 1978.251 kb on + strandat 1978.252 kb on - strandat 1978.252 kb on - strandat 1978.252 kb on - strandat 1978.270 kb on - strandat 1978.284 kb on + strandat 1978.284 kb on + strandat 1978.294 kb on - strandat 1978.377 kb on + strandat 1978.399 kb on + strand, within Echvi_1687at 1978.416 kb on - strand, within Echvi_1687at 1978.464 kb on + strand, within Echvi_1687at 1978.601 kb on + strand, within Echvi_1687at 1978.602 kb on - strand, within Echvi_1687at 1978.638 kb on - strand, within Echvi_1687at 1978.698 kb on + strand, within Echvi_1687at 1978.745 kb on + strand, within Echvi_1687at 1978.863 kb on + strand, within Echvi_1687at 1978.954 kb on + strand, within Echvi_1687at 1978.955 kb on - strand, within Echvi_1687at 1978.979 kb on - strand, within Echvi_1687at 1979.000 kb on + strand, within Echvi_1687at 1979.042 kb on - strandat 1979.162 kb on - strand, within Echvi_1687at 1979.162 kb on - strand, within Echvi_1687at 1979.162 kb on - strand, within Echvi_1687at 1979.182 kb on + strand, within Echvi_1687at 1979.182 kb on + strand, within Echvi_1687at 1979.183 kb on - strand, within Echvi_1687at 1979.185 kb on - strand, within Echvi_1687at 1979.185 kb on - strand, within Echvi_1687at 1979.185 kb on - strand, within Echvi_1687at 1979.188 kb on - strand, within Echvi_1687at 1979.188 kb on - strand, within Echvi_1687

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,976,120 + Echvi_1685 0.17 +0.1
1,976,121 - Echvi_1685 0.17 +0.2
1,976,121 - Echvi_1685 0.17 -0.9
1,976,207 + Echvi_1685 0.25 +0.1
1,976,233 + Echvi_1685 0.27 -0.7
1,976,233 + Echvi_1685 0.27 +2.1
1,976,233 + Echvi_1685 0.27 -0.1
1,976,472 + Echvi_1685 0.48 +0.5
1,976,487 - Echvi_1685 0.49 +0.0
1,976,523 - Echvi_1685 0.52 -0.1
1,976,569 + Echvi_1685 0.56 -0.3
1,976,569 + Echvi_1685 0.56 -0.3
1,976,569 + Echvi_1685 0.56 -1.4
1,976,569 + Echvi_1685 0.56 +0.1
1,976,569 + Echvi_1685 0.56 -2.1
1,976,570 - Echvi_1685 0.56 +1.4
1,976,570 - Echvi_1685 0.56 +1.1
1,976,590 + Echvi_1685 0.58 +0.0
1,976,591 - Echvi_1685 0.58 -0.3
1,976,627 - Echvi_1685 0.61 +1.2
1,976,706 + Echvi_1685 0.68 -0.3
1,976,752 - Echvi_1685 0.72 -0.4
1,976,752 - Echvi_1685 0.72 +0.2
1,976,752 - Echvi_1685 0.72 +0.7
1,976,766 - Echvi_1685 0.73 +0.3
1,976,812 + Echvi_1685 0.77 -0.0
1,976,812 + Echvi_1685 0.77 -0.3
1,976,812 + Echvi_1685 0.77 -0.2
1,976,813 - Echvi_1685 0.77 -0.2
1,976,813 - Echvi_1685 0.77 -0.1
1,976,845 - Echvi_1685 0.80 +0.1
1,976,913 - Echvi_1685 0.85 +0.1
1,976,923 + Echvi_1685 0.86 +0.8
1,976,924 - Echvi_1685 0.86 +0.5
1,976,948 - Echvi_1685 0.88 -0.4
1,976,948 - Echvi_1685 0.88 +1.4
1,976,948 - Echvi_1685 0.88 +0.1
1,976,990 - -0.5
1,977,144 - -0.9
1,977,144 - +0.5
1,977,168 + +0.1
1,977,169 - -0.3
1,977,169 - +0.4
1,977,311 + Echvi_1686 0.21 -0.6
1,977,311 + Echvi_1686 0.21 +1.7
1,977,312 - Echvi_1686 0.21 -1.5
1,977,312 - Echvi_1686 0.21 +0.8
1,977,438 + Echvi_1686 0.32 +0.7
1,977,438 + Echvi_1686 0.32 +0.1
1,977,464 + Echvi_1686 0.34 +1.0
1,977,482 + Echvi_1686 0.35 +1.4
1,977,508 + Echvi_1686 0.38 +0.7
1,977,824 + Echvi_1686 0.65 +0.4
1,977,865 + Echvi_1686 0.68 +1.7
1,977,865 + Echvi_1686 0.68 +0.5
1,977,865 + Echvi_1686 0.68 +0.4
1,977,866 - Echvi_1686 0.68 +0.5
1,977,867 + Echvi_1686 0.68 +0.6
1,977,868 - Echvi_1686 0.68 -2.0
1,977,868 - Echvi_1686 0.68 +1.8
1,977,868 - Echvi_1686 0.68 -0.8
1,977,868 - Echvi_1686 0.68 -0.9
1,978,024 - Echvi_1686 0.82 +0.5
1,978,024 - Echvi_1686 0.82 -0.3
1,978,177 + +0.1
1,978,217 - +1.1
1,978,247 - -0.2
1,978,251 + +0.4
1,978,251 + -1.9
1,978,252 - +0.5
1,978,252 - -0.1
1,978,252 - +0.3
1,978,270 - -0.6
1,978,284 + -0.3
1,978,284 + -1.2
1,978,294 - -0.2
1,978,377 + +0.5
1,978,399 + Echvi_1687 0.11 -1.7
1,978,416 - Echvi_1687 0.12 -0.2
1,978,464 + Echvi_1687 0.17 -0.6
1,978,601 + Echvi_1687 0.29 -0.8
1,978,602 - Echvi_1687 0.29 +0.1
1,978,638 - Echvi_1687 0.32 +0.8
1,978,698 + Echvi_1687 0.37 +0.3
1,978,745 + Echvi_1687 0.41 -0.2
1,978,863 + Echvi_1687 0.52 +0.0
1,978,954 + Echvi_1687 0.59 +0.9
1,978,955 - Echvi_1687 0.60 -0.3
1,978,979 - Echvi_1687 0.62 +0.5
1,979,000 + Echvi_1687 0.64 +1.1
1,979,042 - +3.1
1,979,162 - Echvi_1687 0.78 +1.6
1,979,162 - Echvi_1687 0.78 -0.7
1,979,162 - Echvi_1687 0.78 -0.3
1,979,182 + Echvi_1687 0.79 +0.1
1,979,182 + Echvi_1687 0.79 +0.9
1,979,183 - Echvi_1687 0.80 -2.1
1,979,185 - Echvi_1687 0.80 -0.7
1,979,185 - Echvi_1687 0.80 +0.4
1,979,185 - Echvi_1687 0.80 -0.5
1,979,188 - Echvi_1687 0.80 -0.5
1,979,188 - Echvi_1687 0.80 +0.9

Or see this region's nucleotide sequence