Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21285

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21275 and CA264_21280 are separated by 38 nucleotidesCA264_21280 and CA264_21285 are separated by 62 nucleotidesCA264_21285 and CA264_21290 are separated by 12 nucleotidesCA264_21290 and CA264_21295 are separated by 23 nucleotides CA264_21275: CA264_21275 - hypothetical protein, at 122,195 to 122,824 _21275 CA264_21280: CA264_21280 - hypothetical protein, at 122,863 to 123,234 _21280 CA264_21285: CA264_21285 - hypothetical protein, at 123,297 to 123,764 _21285 CA264_21290: CA264_21290 - SCO family protein, at 123,777 to 124,433 _21290 CA264_21295: CA264_21295 - hypothetical protein, at 124,457 to 124,855 _21295 Position (kb) 123 124Strain fitness (log2 ratio) -2 -1 0 1at 122.453 kb on + strand, within CA264_21275at 122.454 kb on - strand, within CA264_21275at 122.464 kb on - strand, within CA264_21275at 122.822 kb on + strandat 122.852 kb on - strandat 122.879 kb on + strandat 122.892 kb on + strandat 122.938 kb on - strand, within CA264_21280at 122.938 kb on - strand, within CA264_21280at 122.958 kb on - strand, within CA264_21280at 123.100 kb on + strand, within CA264_21280at 123.163 kb on - strand, within CA264_21280at 123.174 kb on - strand, within CA264_21280at 123.194 kb on - strand, within CA264_21280at 123.319 kb on - strandat 123.323 kb on - strandat 123.329 kb on + strandat 123.449 kb on - strand, within CA264_21285at 123.449 kb on - strand, within CA264_21285at 123.456 kb on - strand, within CA264_21285at 123.456 kb on - strand, within CA264_21285at 123.491 kb on - strand, within CA264_21285at 123.759 kb on - strandat 123.804 kb on + strandat 123.923 kb on + strand, within CA264_21290at 123.923 kb on + strand, within CA264_21290at 124.069 kb on - strand, within CA264_21290at 124.077 kb on + strand, within CA264_21290at 124.077 kb on + strand, within CA264_21290at 124.077 kb on + strand, within CA264_21290at 124.078 kb on - strand, within CA264_21290at 124.144 kb on + strand, within CA264_21290at 124.313 kb on - strand, within CA264_21290at 124.431 kb on + strandat 124.449 kb on + strandat 124.450 kb on - strandat 124.548 kb on - strand, within CA264_21295at 124.710 kb on - strand, within CA264_21295at 124.710 kb on - strand, within CA264_21295

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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122,453 + CA264_21275 0.41 -0.4
122,454 - CA264_21275 0.41 -1.0
122,464 - CA264_21275 0.43 +0.0
122,822 + -0.5
122,852 - -1.1
122,879 + +0.4
122,892 + -0.9
122,938 - CA264_21280 0.20 +0.5
122,938 - CA264_21280 0.20 -0.1
122,958 - CA264_21280 0.26 -0.8
123,100 + CA264_21280 0.64 -0.1
123,163 - CA264_21280 0.81 -0.6
123,174 - CA264_21280 0.84 -0.3
123,194 - CA264_21280 0.89 +0.2
123,319 - -2.0
123,323 - +0.9
123,329 + +0.6
123,449 - CA264_21285 0.32 -1.3
123,449 - CA264_21285 0.32 +0.4
123,456 - CA264_21285 0.34 +0.2
123,456 - CA264_21285 0.34 +0.3
123,491 - CA264_21285 0.41 -0.3
123,759 - -0.3
123,804 + +0.7
123,923 + CA264_21290 0.22 -0.7
123,923 + CA264_21290 0.22 -0.3
124,069 - CA264_21290 0.44 -0.1
124,077 + CA264_21290 0.46 -0.6
124,077 + CA264_21290 0.46 -0.1
124,077 + CA264_21290 0.46 -0.2
124,078 - CA264_21290 0.46 -0.5
124,144 + CA264_21290 0.56 +0.0
124,313 - CA264_21290 0.82 +0.6
124,431 + +0.5
124,449 + -1.0
124,450 - -0.8
124,548 - CA264_21295 0.23 -0.4
124,710 - CA264_21295 0.63 -0.1
124,710 - CA264_21295 0.63 +1.1

Or see this region's nucleotide sequence