Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20920 and CA264_20925 are separated by 381 nucleotides CA264_20925 and CA264_20930 overlap by 1 nucleotides CA264_20930 and CA264_20935 are separated by 9 nucleotides CA264_20935 and CA264_20940 are separated by 82 nucleotides
CA264_20920: CA264_20920 - hypothetical protein, at 49,259 to 50,200
_20920
CA264_20925: CA264_20925 - hypothetical protein, at 50,582 to 50,791
_20925
CA264_20930: CA264_20930 - hypothetical protein, at 50,791 to 51,402
_20930
CA264_20935: CA264_20935 - transcriptional regulator, at 51,412 to 51,783
_20935
CA264_20940: CA264_20940 - pyridine nucleotide-disulfide oxidoreductase, at 51,866 to 53,200
_20940
Position (kb) 50
51
52 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 49.791 kb on - strand, within CA264_20920 at 49.794 kb on - strand, within CA264_20920 at 49.815 kb on + strand, within CA264_20920 at 49.956 kb on + strand, within CA264_20920 at 49.956 kb on + strand, within CA264_20920 at 49.956 kb on + strand, within CA264_20920 at 49.956 kb on - strand, within CA264_20920 at 49.957 kb on - strand, within CA264_20920 at 49.961 kb on + strand, within CA264_20920 at 49.966 kb on + strand, within CA264_20920 at 49.966 kb on + strand, within CA264_20920 at 50.089 kb on + strand, within CA264_20920 at 50.105 kb on + strand, within CA264_20920 at 50.105 kb on + strand, within CA264_20920 at 50.105 kb on + strand, within CA264_20920 at 50.105 kb on + strand, within CA264_20920 at 50.125 kb on + strand at 50.138 kb on + strand at 50.139 kb on - strand at 50.139 kb on - strand at 50.139 kb on - strand at 50.141 kb on - strand at 50.188 kb on + strand at 50.189 kb on - strand at 50.189 kb on - strand at 50.199 kb on - strand at 50.199 kb on - strand at 50.264 kb on - strand at 50.330 kb on + strand at 50.367 kb on - strand at 50.425 kb on + strand at 50.426 kb on - strand at 50.426 kb on - strand at 50.427 kb on + strand at 50.435 kb on + strand at 50.489 kb on + strand at 50.490 kb on - strand at 50.761 kb on + strand, within CA264_20925 at 50.761 kb on + strand, within CA264_20925 at 50.762 kb on - strand, within CA264_20925 at 50.786 kb on - strand at 50.802 kb on + strand at 50.809 kb on + strand at 50.880 kb on - strand, within CA264_20930 at 50.904 kb on + strand, within CA264_20930 at 50.906 kb on + strand, within CA264_20930 at 51.151 kb on - strand, within CA264_20930 at 51.255 kb on - strand, within CA264_20930 at 51.429 kb on + strand at 51.439 kb on - strand at 51.488 kb on + strand, within CA264_20935 at 51.633 kb on - strand, within CA264_20935 at 51.763 kb on - strand at 51.791 kb on - strand at 51.795 kb on - strand at 51.795 kb on - strand at 51.847 kb on - strand at 51.952 kb on + strand at 52.184 kb on + strand, within CA264_20940 at 52.185 kb on - strand, within CA264_20940 at 52.258 kb on - strand, within CA264_20940 at 52.310 kb on + strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.311 kb on - strand, within CA264_20940 at 52.364 kb on - strand, within CA264_20940 at 52.383 kb on - strand, within CA264_20940 at 52.385 kb on - strand, within CA264_20940
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 49,791 - CA264_20920 0.56 +1.2 49,794 - CA264_20920 0.57 +1.3 49,815 + CA264_20920 0.59 +0.5 49,956 + CA264_20920 0.74 -0.3 49,956 + CA264_20920 0.74 -0.9 49,956 + CA264_20920 0.74 -1.7 49,956 - CA264_20920 0.74 +0.8 49,957 - CA264_20920 0.74 -0.5 49,961 + CA264_20920 0.75 +0.2 49,966 + CA264_20920 0.75 -0.7 49,966 + CA264_20920 0.75 -0.9 50,089 + CA264_20920 0.88 +0.2 50,105 + CA264_20920 0.90 -1.8 50,105 + CA264_20920 0.90 -0.8 50,105 + CA264_20920 0.90 -1.0 50,105 + CA264_20920 0.90 -0.2 50,125 + -1.2 50,138 + -1.7 50,139 - +0.1 50,139 - +0.8 50,139 - +0.6 50,141 - +0.3 50,188 + -1.3 50,189 - -0.6 50,189 - -0.3 50,199 - +0.6 50,199 - +0.5 50,264 - +0.8 50,330 + -1.5 50,367 - -0.3 50,425 + -2.3 50,426 - +0.0 50,426 - +0.3 50,427 + -2.4 50,435 + -1.9 50,489 + -1.5 50,490 - +0.6 50,761 + CA264_20925 0.85 -1.3 50,761 + CA264_20925 0.85 -1.9 50,762 - CA264_20925 0.86 +0.6 50,786 - +0.0 50,802 + -0.3 50,809 + -1.4 50,880 - CA264_20930 0.15 +0.0 50,904 + CA264_20930 0.18 -1.1 50,906 + CA264_20930 0.19 -0.5 51,151 - CA264_20930 0.59 -0.8 51,255 - CA264_20930 0.76 +0.5 51,429 + -1.3 51,439 - +0.9 51,488 + CA264_20935 0.20 +0.1 51,633 - CA264_20935 0.59 +0.2 51,763 - +0.7 51,791 - +0.2 51,795 - -2.9 51,795 - -2.0 51,847 - -0.6 51,952 + -1.0 52,184 + CA264_20940 0.24 -1.4 52,185 - CA264_20940 0.24 +0.9 52,258 - CA264_20940 0.29 -0.1 52,310 + CA264_20940 0.33 -2.2 52,311 - CA264_20940 0.33 -1.2 52,311 - CA264_20940 0.33 -0.5 52,311 - CA264_20940 0.33 +2.5 52,311 - CA264_20940 0.33 +0.6 52,311 - CA264_20940 0.33 -0.1 52,364 - CA264_20940 0.37 -2.3 52,383 - CA264_20940 0.39 -0.1 52,385 - CA264_20940 0.39 +0.2
Or see this region's nucleotide sequence