Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20890

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20885 and CA264_20890 are separated by 52 nucleotidesCA264_20890 and CA264_20895 are separated by 906 nucleotides CA264_20885: CA264_20885 - T9SS C-terminal target domain-containing protein, at 40,300 to 43,356 _20885 CA264_20890: CA264_20890 - hypothetical protein, at 43,409 to 43,957 _20890 CA264_20895: CA264_20895 - hypothetical protein, at 44,864 to 45,274 _20895 Position (kb) 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1at 42.449 kb on + strand, within CA264_20885at 42.449 kb on + strand, within CA264_20885at 42.450 kb on - strand, within CA264_20885at 42.450 kb on - strand, within CA264_20885at 42.455 kb on + strand, within CA264_20885at 42.455 kb on + strand, within CA264_20885at 42.458 kb on + strand, within CA264_20885at 42.458 kb on + strand, within CA264_20885at 42.458 kb on + strand, within CA264_20885at 42.459 kb on - strand, within CA264_20885at 42.459 kb on - strand, within CA264_20885at 42.460 kb on + strand, within CA264_20885at 42.461 kb on - strand, within CA264_20885at 42.461 kb on - strand, within CA264_20885at 42.461 kb on - strand, within CA264_20885at 42.461 kb on - strand, within CA264_20885at 42.461 kb on - strand, within CA264_20885at 42.461 kb on - strand, within CA264_20885at 42.498 kb on - strand, within CA264_20885at 42.525 kb on + strand, within CA264_20885at 42.526 kb on - strand, within CA264_20885at 42.526 kb on - strand, within CA264_20885at 42.526 kb on - strand, within CA264_20885at 42.527 kb on + strand, within CA264_20885at 42.527 kb on + strand, within CA264_20885at 42.527 kb on + strand, within CA264_20885at 42.527 kb on + strand, within CA264_20885at 42.528 kb on - strand, within CA264_20885at 42.528 kb on - strand, within CA264_20885at 42.546 kb on + strand, within CA264_20885at 42.546 kb on + strand, within CA264_20885at 42.547 kb on - strand, within CA264_20885at 42.548 kb on + strand, within CA264_20885at 42.607 kb on - strand, within CA264_20885at 42.607 kb on - strand, within CA264_20885at 42.627 kb on + strand, within CA264_20885at 42.627 kb on + strand, within CA264_20885at 42.628 kb on - strand, within CA264_20885at 42.638 kb on + strand, within CA264_20885at 42.639 kb on - strand, within CA264_20885at 42.705 kb on + strand, within CA264_20885at 42.706 kb on - strand, within CA264_20885at 42.708 kb on - strand, within CA264_20885at 42.713 kb on - strand, within CA264_20885at 42.754 kb on - strand, within CA264_20885at 42.772 kb on + strand, within CA264_20885at 42.778 kb on + strand, within CA264_20885at 42.778 kb on + strand, within CA264_20885at 42.794 kb on - strand, within CA264_20885at 42.794 kb on - strand, within CA264_20885at 42.794 kb on - strand, within CA264_20885at 42.794 kb on - strand, within CA264_20885at 42.839 kb on - strand, within CA264_20885at 42.895 kb on + strand, within CA264_20885at 42.896 kb on - strand, within CA264_20885at 42.896 kb on - strand, within CA264_20885at 42.899 kb on + strand, within CA264_20885at 42.930 kb on - strand, within CA264_20885at 42.930 kb on - strand, within CA264_20885at 42.934 kb on + strand, within CA264_20885at 42.934 kb on + strand, within CA264_20885at 42.935 kb on - strand, within CA264_20885at 42.935 kb on - strand, within CA264_20885at 42.999 kb on - strand, within CA264_20885at 43.001 kb on + strand, within CA264_20885at 43.001 kb on + strand, within CA264_20885at 43.002 kb on - strand, within CA264_20885at 43.021 kb on + strand, within CA264_20885at 43.022 kb on - strand, within CA264_20885at 43.026 kb on + strand, within CA264_20885at 43.073 kb on - strandat 43.091 kb on + strandat 43.092 kb on - strandat 43.092 kb on - strandat 43.092 kb on - strandat 43.356 kb on + strandat 43.370 kb on + strandat 43.372 kb on + strandat 43.493 kb on + strand, within CA264_20890at 43.494 kb on - strand, within CA264_20890at 43.505 kb on - strand, within CA264_20890at 43.546 kb on + strand, within CA264_20890at 43.561 kb on - strand, within CA264_20890at 43.578 kb on + strand, within CA264_20890at 43.630 kb on + strand, within CA264_20890at 43.631 kb on - strand, within CA264_20890at 43.631 kb on - strand, within CA264_20890at 43.641 kb on - strand, within CA264_20890at 43.696 kb on + strand, within CA264_20890at 43.715 kb on + strand, within CA264_20890at 43.715 kb on + strand, within CA264_20890at 43.716 kb on - strand, within CA264_20890at 43.716 kb on - strand, within CA264_20890at 43.726 kb on + strand, within CA264_20890at 43.749 kb on + strand, within CA264_20890at 43.749 kb on + strand, within CA264_20890at 43.749 kb on + strand, within CA264_20890at 43.834 kb on + strand, within CA264_20890at 43.835 kb on - strand, within CA264_20890at 43.948 kb on + strandat 43.949 kb on - strandat 43.957 kb on + strandat 43.967 kb on - strandat 44.117 kb on + strandat 44.131 kb on + strandat 44.183 kb on + strandat 44.183 kb on + strandat 44.184 kb on - strandat 44.184 kb on - strandat 44.186 kb on + strandat 44.186 kb on + strandat 44.187 kb on - strandat 44.204 kb on - strandat 44.248 kb on - strandat 44.329 kb on - strandat 44.349 kb on + strandat 44.349 kb on + strandat 44.357 kb on + strandat 44.358 kb on - strandat 44.360 kb on + strandat 44.361 kb on - strandat 44.361 kb on - strandat 44.365 kb on - strandat 44.413 kb on + strandat 44.457 kb on - strandat 44.494 kb on - strandat 44.590 kb on - strandat 44.653 kb on - strandat 44.653 kb on - strandat 44.691 kb on - strandat 44.692 kb on + strandat 44.693 kb on - strandat 44.706 kb on + strandat 44.707 kb on - strandat 44.708 kb on + strandat 44.709 kb on - strandat 44.716 kb on + strandat 44.818 kb on - strandat 44.826 kb on + strandat 44.835 kb on + strandat 44.841 kb on + strandat 44.850 kb on + strandat 44.850 kb on + strandat 44.850 kb on + strandat 44.851 kb on - strandat 44.875 kb on - strandat 44.907 kb on + strand, within CA264_20895at 44.945 kb on + strand, within CA264_20895at 44.945 kb on + strand, within CA264_20895at 44.946 kb on - strand, within CA264_20895

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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42,449 + CA264_20885 0.70 -0.9
42,449 + CA264_20885 0.70 -0.8
42,450 - CA264_20885 0.70 +0.1
42,450 - CA264_20885 0.70 -1.4
42,455 + CA264_20885 0.70 +0.7
42,455 + CA264_20885 0.70 +0.9
42,458 + CA264_20885 0.71 +0.0
42,458 + CA264_20885 0.71 -1.1
42,458 + CA264_20885 0.71 -0.4
42,459 - CA264_20885 0.71 +0.2
42,459 - CA264_20885 0.71 -0.5
42,460 + CA264_20885 0.71 +0.2
42,461 - CA264_20885 0.71 -1.0
42,461 - CA264_20885 0.71 -0.1
42,461 - CA264_20885 0.71 +0.8
42,461 - CA264_20885 0.71 -0.1
42,461 - CA264_20885 0.71 -0.1
42,461 - CA264_20885 0.71 +0.3
42,498 - CA264_20885 0.72 +0.0
42,525 + CA264_20885 0.73 +0.8
42,526 - CA264_20885 0.73 +0.0
42,526 - CA264_20885 0.73 -0.6
42,526 - CA264_20885 0.73 -0.2
42,527 + CA264_20885 0.73 -0.4
42,527 + CA264_20885 0.73 -0.4
42,527 + CA264_20885 0.73 -0.5
42,527 + CA264_20885 0.73 -0.4
42,528 - CA264_20885 0.73 -0.0
42,528 - CA264_20885 0.73 +0.5
42,546 + CA264_20885 0.73 +1.5
42,546 + CA264_20885 0.73 +0.5
42,547 - CA264_20885 0.74 -1.2
42,548 + CA264_20885 0.74 +0.2
42,607 - CA264_20885 0.75 -0.6
42,607 - CA264_20885 0.75 +0.1
42,627 + CA264_20885 0.76 +1.5
42,627 + CA264_20885 0.76 -0.6
42,628 - CA264_20885 0.76 +0.4
42,638 + CA264_20885 0.76 +0.1
42,639 - CA264_20885 0.77 +1.3
42,705 + CA264_20885 0.79 -0.2
42,706 - CA264_20885 0.79 -0.1
42,708 - CA264_20885 0.79 +1.6
42,713 - CA264_20885 0.79 -0.6
42,754 - CA264_20885 0.80 -1.0
42,772 + CA264_20885 0.81 +0.8
42,778 + CA264_20885 0.81 +0.7
42,778 + CA264_20885 0.81 -0.5
42,794 - CA264_20885 0.82 +0.7
42,794 - CA264_20885 0.82 +0.0
42,794 - CA264_20885 0.82 +0.0
42,794 - CA264_20885 0.82 +0.2
42,839 - CA264_20885 0.83 +1.1
42,895 + CA264_20885 0.85 -0.7
42,896 - CA264_20885 0.85 +0.5
42,896 - CA264_20885 0.85 -0.4
42,899 + CA264_20885 0.85 +0.8
42,930 - CA264_20885 0.86 +0.6
42,930 - CA264_20885 0.86 -0.3
42,934 + CA264_20885 0.86 +0.9
42,934 + CA264_20885 0.86 -0.7
42,935 - CA264_20885 0.86 -1.1
42,935 - CA264_20885 0.86 -0.1
42,999 - CA264_20885 0.88 -0.1
43,001 + CA264_20885 0.88 -0.5
43,001 + CA264_20885 0.88 -0.4
43,002 - CA264_20885 0.88 +0.7
43,021 + CA264_20885 0.89 -0.6
43,022 - CA264_20885 0.89 +0.8
43,026 + CA264_20885 0.89 -1.0
43,073 - +0.2
43,091 + -0.1
43,092 - +0.4
43,092 - +0.4
43,092 - +1.1
43,356 + -1.0
43,370 + -0.6
43,372 + -0.1
43,493 + CA264_20890 0.15 -0.4
43,494 - CA264_20890 0.15 -0.7
43,505 - CA264_20890 0.17 -1.5
43,546 + CA264_20890 0.25 -0.1
43,561 - CA264_20890 0.28 -0.6
43,578 + CA264_20890 0.31 -1.0
43,630 + CA264_20890 0.40 -1.1
43,631 - CA264_20890 0.40 -0.4
43,631 - CA264_20890 0.40 -0.6
43,641 - CA264_20890 0.42 -0.8
43,696 + CA264_20890 0.52 -0.6
43,715 + CA264_20890 0.56 -0.6
43,715 + CA264_20890 0.56 -1.1
43,716 - CA264_20890 0.56 +0.5
43,716 - CA264_20890 0.56 -0.1
43,726 + CA264_20890 0.58 -1.2
43,749 + CA264_20890 0.62 -3.2
43,749 + CA264_20890 0.62 -1.0
43,749 + CA264_20890 0.62 -0.1
43,834 + CA264_20890 0.77 -0.2
43,835 - CA264_20890 0.78 -1.8
43,948 + -1.4
43,949 - +1.3
43,957 + -0.1
43,967 - +0.6
44,117 + -0.7
44,131 + -1.6
44,183 + -0.6
44,183 + +0.2
44,184 - -0.3
44,184 - -0.9
44,186 + -0.6
44,186 + -0.6
44,187 - -1.1
44,204 - -1.4
44,248 - -1.4
44,329 - -0.9
44,349 + -0.7
44,349 + +0.0
44,357 + -0.6
44,358 - -2.4
44,360 + +0.1
44,361 - +0.4
44,361 - -0.1
44,365 - +0.5
44,413 + -0.3
44,457 - -0.9
44,494 - -0.9
44,590 - -0.5
44,653 - -0.6
44,653 - -0.5
44,691 - -1.0
44,692 + -1.2
44,693 - -0.4
44,706 + -0.5
44,707 - -0.4
44,708 + +0.2
44,709 - -1.5
44,716 + -1.1
44,818 - -1.7
44,826 + +0.0
44,835 + -1.1
44,841 + -0.4
44,850 + -0.8
44,850 + -0.1
44,850 + -0.8
44,851 - -1.1
44,875 - -1.0
44,907 + CA264_20895 0.10 +0.3
44,945 + CA264_20895 0.20 +0.4
44,945 + CA264_20895 0.20 -1.1
44,946 - CA264_20895 0.20 -0.0

Or see this region's nucleotide sequence