Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20780 and CA264_20785 are separated by 243 nucleotides CA264_20785 and CA264_20790 are separated by 46 nucleotides CA264_20790 and CA264_20795 are separated by 260 nucleotides CA264_20795 and CA264_20800 are separated by 12 nucleotides CA264_20800 and CA264_20805 overlap by 14 nucleotides
CA264_20780: CA264_20780 - alpha-glucan family phosphorylase, at 16,983 to 18,638
_20780
CA264_20785: CA264_20785 - hypothetical protein, at 18,882 to 19,229
_20785
CA264_20790: CA264_20790 - glyceraldehyde-3-phosphate dehydrogenase, at 19,276 to 20,313
_20790
CA264_20795: CA264_20795 - hypothetical protein, at 20,574 to 20,816
_20795
CA264_20800: CA264_20800 - hypothetical protein, at 20,829 to 21,056
_20800
CA264_20805: CA264_20805 - hypothetical protein, at 21,043 to 21,324
_20805
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.295 kb on + strand, within CA264_20780 at 18.296 kb on - strand, within CA264_20780 at 18.298 kb on + strand, within CA264_20780 at 18.299 kb on - strand, within CA264_20780 at 18.328 kb on - strand, within CA264_20780 at 18.371 kb on - strand, within CA264_20780 at 18.372 kb on + strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.399 kb on - strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.446 kb on - strand, within CA264_20780 at 18.527 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.530 kb on - strand at 18.557 kb on - strand at 18.571 kb on + strand at 18.571 kb on + strand at 18.572 kb on - strand at 18.589 kb on + strand at 18.590 kb on - strand at 18.601 kb on + strand at 18.602 kb on - strand at 18.607 kb on + strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.615 kb on + strand at 18.616 kb on - strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.639 kb on - strand at 18.639 kb on - strand at 18.642 kb on + strand at 18.643 kb on - strand at 18.647 kb on + strand at 18.710 kb on + strand at 18.732 kb on + strand at 18.759 kb on - strand at 18.823 kb on + strand at 18.825 kb on + strand at 18.825 kb on + strand at 18.826 kb on - strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.864 kb on - strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.901 kb on - strand at 18.901 kb on - strand at 18.912 kb on + strand at 18.913 kb on - strand at 18.955 kb on - strand, within CA264_20785 at 18.973 kb on + strand, within CA264_20785 at 18.974 kb on - strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.162 kb on + strand, within CA264_20785 at 19.163 kb on - strand, within CA264_20785 at 19.164 kb on + strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.218 kb on - strand at 19.241 kb on + strand at 19.246 kb on + strand at 19.246 kb on + strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.282 kb on + strand at 19.283 kb on - strand at 19.421 kb on + strand, within CA264_20790 at 19.421 kb on + strand, within CA264_20790 at 19.422 kb on - strand, within CA264_20790 at 19.441 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.519 kb on + strand, within CA264_20790 at 19.691 kb on - strand, within CA264_20790 at 19.736 kb on - strand, within CA264_20790 at 19.758 kb on + strand, within CA264_20790 at 19.758 kb on + strand, within CA264_20790 at 19.759 kb on - strand, within CA264_20790 at 19.879 kb on - strand, within CA264_20790 at 20.021 kb on - strand at 20.036 kb on - strand, within CA264_20790 at 20.153 kb on + strand, within CA264_20790 at 20.163 kb on - strand, within CA264_20790 at 20.173 kb on + strand, within CA264_20790 at 20.299 kb on + strand at 20.299 kb on + strand at 20.299 kb on + strand at 20.313 kb on + strand at 20.313 kb on + strand at 20.313 kb on + strand at 20.314 kb on - strand at 20.360 kb on + strand at 20.361 kb on - strand at 20.361 kb on - strand at 20.365 kb on - strand at 20.365 kb on - strand at 20.367 kb on - strand at 20.367 kb on - strand at 20.432 kb on + strand at 20.432 kb on + strand at 20.438 kb on + strand at 20.438 kb on + strand at 20.464 kb on + strand at 20.464 kb on + strand at 20.465 kb on - strand at 20.465 kb on - strand at 20.465 kb on - strand at 20.546 kb on + strand at 20.547 kb on - strand at 20.566 kb on + strand at 20.573 kb on + strand at 20.573 kb on + strand at 20.573 kb on + strand at 20.574 kb on - strand at 20.574 kb on - strand at 20.615 kb on + strand, within CA264_20795 at 20.615 kb on + strand, within CA264_20795 at 20.616 kb on - strand, within CA264_20795 at 20.639 kb on + strand, within CA264_20795 at 20.641 kb on + strand, within CA264_20795 at 20.641 kb on + strand, within CA264_20795 at 20.641 kb on + strand, within CA264_20795 at 20.664 kb on + strand, within CA264_20795 at 20.668 kb on + strand, within CA264_20795 at 20.697 kb on + strand, within CA264_20795 at 20.717 kb on - strand, within CA264_20795 at 20.766 kb on + strand, within CA264_20795 at 20.766 kb on + strand, within CA264_20795 at 20.766 kb on + strand, within CA264_20795 at 20.806 kb on + strand at 20.820 kb on + strand at 20.820 kb on + strand at 20.821 kb on - strand at 20.821 kb on - strand at 20.821 kb on - strand at 20.843 kb on - strand at 20.864 kb on + strand, within CA264_20800 at 20.864 kb on + strand, within CA264_20800 at 20.865 kb on - strand, within CA264_20800 at 20.865 kb on - strand, within CA264_20800 at 20.865 kb on - strand, within CA264_20800 at 21.042 kb on + strand at 21.042 kb on + strand at 21.042 kb on + strand at 21.059 kb on + strand at 21.060 kb on - strand at 21.151 kb on - strand, within CA264_20805 at 21.234 kb on - strand, within CA264_20805 at 21.253 kb on - strand, within CA264_20805 at 21.253 kb on - strand, within CA264_20805 at 21.258 kb on - strand, within CA264_20805 at 21.269 kb on + strand, within CA264_20805
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 18,295 + CA264_20780 0.79 -0.0 18,296 - CA264_20780 0.79 +0.2 18,298 + CA264_20780 0.79 -0.0 18,299 - CA264_20780 0.79 +0.4 18,328 - CA264_20780 0.81 -0.5 18,371 - CA264_20780 0.84 +0.0 18,372 + CA264_20780 0.84 +0.3 18,373 - CA264_20780 0.84 +0.9 18,373 - CA264_20780 0.84 +1.3 18,398 + CA264_20780 0.85 -1.2 18,398 + CA264_20780 0.85 +0.1 18,399 - CA264_20780 0.86 -0.4 18,413 + CA264_20780 0.86 -0.3 18,413 + CA264_20780 0.86 +0.8 18,413 + CA264_20780 0.86 -0.6 18,413 + CA264_20780 0.86 +0.0 18,427 + CA264_20780 0.87 +0.7 18,427 + CA264_20780 0.87 +0.2 18,427 + CA264_20780 0.87 -0.4 18,428 - CA264_20780 0.87 +0.6 18,428 - CA264_20780 0.87 -0.2 18,446 - CA264_20780 0.88 +0.3 18,527 + -0.3 18,529 + -1.1 18,529 + -1.0 18,530 - +0.0 18,557 - -0.7 18,571 + -0.3 18,571 + -0.0 18,572 - +2.0 18,589 + +0.1 18,590 - -0.3 18,601 + -1.3 18,602 - -0.8 18,607 + -0.2 18,608 - +0.3 18,608 - -0.8 18,608 - -0.6 18,608 - -0.9 18,615 + -0.2 18,616 - -0.2 18,638 + +0.1 18,638 + +0.7 18,638 + -0.8 18,638 + +0.7 18,639 - -0.4 18,639 - +1.5 18,642 + +0.2 18,643 - -0.2 18,647 + +1.2 18,710 + +1.1 18,732 + +0.7 18,759 - +0.1 18,823 + +0.7 18,825 + +0.2 18,825 + -0.1 18,826 - -0.0 18,863 + -0.2 18,863 + +0.5 18,863 + -0.1 18,863 + +0.9 18,864 - +0.2 18,900 + -0.8 18,900 + +0.7 18,900 + -0.5 18,900 + -0.0 18,901 - +0.9 18,901 - +0.2 18,912 + +0.2 18,913 - +0.6 18,955 - CA264_20785 0.21 +0.7 18,973 + CA264_20785 0.26 +0.4 18,974 - CA264_20785 0.26 -0.1 19,051 + CA264_20785 0.49 +0.5 19,051 + CA264_20785 0.49 +0.0 19,162 + CA264_20785 0.80 -0.6 19,163 - CA264_20785 0.81 -0.1 19,164 + CA264_20785 0.81 +0.4 19,165 - CA264_20785 0.81 -0.2 19,165 - CA264_20785 0.81 +0.6 19,166 + CA264_20785 0.82 +0.0 19,166 + CA264_20785 0.82 -0.2 19,218 - +0.3 19,241 + +0.1 19,246 + +0.2 19,246 + +0.2 19,247 - -0.9 19,247 - -0.3 19,247 - +0.1 19,282 + -0.1 19,283 - +1.3 19,421 + CA264_20790 0.14 +0.6 19,421 + CA264_20790 0.14 +0.7 19,422 - CA264_20790 0.14 +0.1 19,441 + CA264_20790 0.16 -1.0 19,475 + CA264_20790 0.19 +0.1 19,475 + CA264_20790 0.19 -0.1 19,476 - CA264_20790 0.19 +0.2 19,476 - CA264_20790 0.19 +0.3 19,519 + CA264_20790 0.23 +0.9 19,691 - CA264_20790 0.40 -0.1 19,736 - CA264_20790 0.44 +1.0 19,758 + CA264_20790 0.46 -0.8 19,758 + CA264_20790 0.46 -0.0 19,759 - CA264_20790 0.47 +0.2 19,879 - CA264_20790 0.58 -0.3 20,021 - -0.3 20,036 - CA264_20790 0.73 +0.6 20,153 + CA264_20790 0.84 -0.2 20,163 - CA264_20790 0.85 -0.8 20,173 + CA264_20790 0.86 +0.0 20,299 + -0.3 20,299 + -0.1 20,299 + -2.7 20,313 + -0.2 20,313 + -0.6 20,313 + +0.4 20,314 - -0.9 20,360 + -0.0 20,361 - +1.5 20,361 - -0.1 20,365 - +0.0 20,365 - -0.1 20,367 - -0.1 20,367 - +0.8 20,432 + -0.4 20,432 + +0.4 20,438 + +0.4 20,438 + +0.3 20,464 + +0.2 20,464 + +0.2 20,465 - +0.1 20,465 - -0.8 20,465 - +0.2 20,546 + -0.4 20,547 - -0.5 20,566 + +0.1 20,573 + +1.6 20,573 + -0.7 20,573 + -0.7 20,574 - -0.2 20,574 - +0.7 20,615 + CA264_20795 0.17 +1.3 20,615 + CA264_20795 0.17 -0.1 20,616 - CA264_20795 0.17 +0.1 20,639 + CA264_20795 0.27 -0.9 20,641 + CA264_20795 0.28 -0.2 20,641 + CA264_20795 0.28 -0.1 20,641 + CA264_20795 0.28 +0.3 20,664 + CA264_20795 0.37 -0.3 20,668 + CA264_20795 0.39 -1.1 20,697 + CA264_20795 0.51 +0.5 20,717 - CA264_20795 0.59 +0.3 20,766 + CA264_20795 0.79 -0.3 20,766 + CA264_20795 0.79 +0.2 20,766 + CA264_20795 0.79 +0.4 20,806 + -0.8 20,820 + +0.5 20,820 + -1.2 20,821 - +0.8 20,821 - +0.4 20,821 - +1.2 20,843 - +0.0 20,864 + CA264_20800 0.15 +0.2 20,864 + CA264_20800 0.15 -0.1 20,865 - CA264_20800 0.16 -0.6 20,865 - CA264_20800 0.16 +0.9 20,865 - CA264_20800 0.16 +0.5 21,042 + -0.7 21,042 + -0.9 21,042 + -0.3 21,059 + +0.6 21,060 - +0.7 21,151 - CA264_20805 0.38 +0.0 21,234 - CA264_20805 0.68 -0.6 21,253 - CA264_20805 0.74 +0.8 21,253 - CA264_20805 0.74 -0.3 21,258 - CA264_20805 0.76 +0.8 21,269 + CA264_20805 0.80 +0.2
Or see this region's nucleotide sequence