Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20055

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20045 and CA264_20050 overlap by 17 nucleotidesCA264_20050 and CA264_20055 are separated by 11 nucleotidesCA264_20055 and CA264_20060 are separated by 69 nucleotidesCA264_20060 and CA264_20065 are separated by 50 nucleotides CA264_20045: CA264_20045 - UDP-2,3-diacylglucosamine hydrolase, at 4,620,491 to 4,621,261 _20045 CA264_20050: CA264_20050 - hypothetical protein, at 4,621,245 to 4,621,898 _20050 CA264_20055: CA264_20055 - peptidase M41, at 4,621,910 to 4,624,033 _20055 CA264_20060: CA264_20060 - ribosome silencing factor RsfS, at 4,624,103 to 4,624,477 _20060 CA264_20065: CA264_20065 - biotin--[acetyl-CoA-carboxylase] ligase, at 4,624,528 to 4,625,277 _20065 Position (kb) 4621 4622 4623 4624 4625Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4621.305 kb on + strandat 4621.381 kb on + strand, within CA264_20050at 4621.381 kb on + strand, within CA264_20050at 4621.382 kb on - strand, within CA264_20050at 4621.382 kb on - strand, within CA264_20050at 4621.600 kb on - strand, within CA264_20050at 4621.681 kb on + strand, within CA264_20050at 4621.682 kb on - strand, within CA264_20050at 4621.717 kb on + strand, within CA264_20050at 4621.717 kb on + strand, within CA264_20050at 4621.718 kb on - strand, within CA264_20050at 4621.722 kb on - strand, within CA264_20050at 4621.786 kb on - strand, within CA264_20050at 4621.867 kb on - strandat 4621.869 kb on + strandat 4621.869 kb on + strandat 4621.873 kb on - strandat 4621.895 kb on - strandat 4621.928 kb on + strandat 4621.928 kb on + strandat 4621.929 kb on - strandat 4623.800 kb on + strand, within CA264_20055at 4623.902 kb on + strandat 4624.042 kb on - strandat 4624.042 kb on - strandat 4624.124 kb on + strandat 4624.124 kb on + strandat 4624.193 kb on + strand, within CA264_20060at 4624.194 kb on - strand, within CA264_20060at 4624.197 kb on - strand, within CA264_20060at 4624.340 kb on + strand, within CA264_20060at 4624.499 kb on + strandat 4624.500 kb on - strandat 4624.521 kb on + strandat 4624.524 kb on + strandat 4624.525 kb on - strandat 4624.525 kb on - strandat 4624.527 kb on + strandat 4624.527 kb on + strandat 4624.527 kb on + strandat 4624.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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4,621,305 + -1.4
4,621,381 + CA264_20050 0.21 -3.6
4,621,381 + CA264_20050 0.21 -4.1
4,621,382 - CA264_20050 0.21 +2.1
4,621,382 - CA264_20050 0.21 +0.6
4,621,600 - CA264_20050 0.54 +0.3
4,621,681 + CA264_20050 0.67 -1.9
4,621,682 - CA264_20050 0.67 +0.0
4,621,717 + CA264_20050 0.72 -2.4
4,621,717 + CA264_20050 0.72 -2.5
4,621,718 - CA264_20050 0.72 +0.9
4,621,722 - CA264_20050 0.73 -0.2
4,621,786 - CA264_20050 0.83 +0.3
4,621,867 - -0.4
4,621,869 + -3.5
4,621,869 + -2.8
4,621,873 - -0.1
4,621,895 - -0.9
4,621,928 + -2.3
4,621,928 + -1.0
4,621,929 - +1.2
4,623,800 + CA264_20055 0.89 -2.5
4,623,902 + +1.1
4,624,042 - -0.6
4,624,042 - +1.4
4,624,124 + -0.1
4,624,124 + +1.4
4,624,193 + CA264_20060 0.24 +0.6
4,624,194 - CA264_20060 0.24 +3.1
4,624,197 - CA264_20060 0.25 +1.8
4,624,340 + CA264_20060 0.63 +1.0
4,624,499 + +0.3
4,624,500 - +1.3
4,624,521 + +0.0
4,624,524 + +0.5
4,624,525 - +0.1
4,624,525 - +1.7
4,624,527 + +1.5
4,624,527 + +0.2
4,624,527 + +0.7
4,624,528 - +0.6

Or see this region's nucleotide sequence